FC931336

Overview
NameFC931336
Unique NameFC931336
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length646
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5490 contig Ccv1_Contig5490:491..1136. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931336 vs. ExPASy Swiss-Prot
Match: GRXC4_ARATH (Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 PE=2 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.230e-42
Identity = 83/125 (66.40%), Postives = 108/125 (86.40%), Query Frame = 2
Query:  161 ISVLTLTIATLLFWASFSGASDKSAEAAFVEKTVSSHKIVIFSKAYCPYCRMAKSVFKELNMGPHVVELDERDDGWNIQDALGEMVGRRTVPRVFMNGKHIGGSDDTVEAYESGKLAQLLGIAAS 535
            IS++ L +A + F +  S A+  S EA FV+KT+SSHKIVIFSK+YCPYC+ AKSVF+EL+  P+VVELDER+DGW+IQ ALGE+VGRRTVP+VF+NGKH+GGSDDTV+AYESG+LA+LLG++ +
Sbjct:    7 ISMVMLLVALVTFISMVSSAAS-SPEADFVKKTISSHKIVIFSKSYCPYCKKAKSVFRELDQVPYVVELDEREDGWSIQTALGEIVGRRTVPQVFINGKHLGGSDDTVDAYESGELAKLLGVSGN 130          
BLAST of FC931336 vs. ExPASy Swiss-Prot
Match: GRXC8_ORYSJ (Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.033e-37
Identity = 73/107 (68.22%), Postives = 93/107 (86.92%), Query Frame = 2
Query:  212 SGASDKSAEAAFVEKTVSSHKIVIFSKAYCPYCRMAKSVFKELNMG--PHVVELDERDDGWNIQDALGEMVGRRTVPRVFMNGKHIGGSDDTVEAYESGKLAQLLGI 526
            S AS  +++++FV+ TV +H +VIFSK+YCPYCR AK+VFKEL +   P+VVELD+R+DGW IQDAL +MVGRRTVP+VF++GKH+GGSDDTVEAYESGKLA+LL I
Sbjct:   24 SAASGTASKSSFVKSTVKAHDVVIFSKSYCPYCRRAKAVFKELELKKEPYVVELDQREDGWEIQDALSDMVGRRTVPQVFVHGKHLGGSDDTVEAYESGKLAKLLNI 130          
BLAST of FC931336 vs. ExPASy Swiss-Prot
Match: GRXC3_ARATH (Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.464e-27
Identity = 63/119 (52.94%), Postives = 81/119 (68.07%), Query Frame = 2
Query:  176 LTIATLLFWASFSGASDKSAEA----AFVEKTVSSHKIVIFSKAYCPYCRMAKSVFKELNMGPHVVELDERDDGWNIQDALGEMVGRRTVPRVFMNGKHIGGSDDTVEAYESGKLAQLL 520
            + +A LL +      S+ +  A    AFV+  + S+KIVIFSK+YCPYC  +K +F +L   P VVELD+R+DG  IQ  L E VGRRTVP+VF+NGKHIGGSDD   A ESG+L +LL
Sbjct:    9 VVVAALLLFVVLCDLSNSAGAANSVSAFVQNAILSNKIVIFSKSYCPYCLRSKRIFSQLKEEPFVVELDQREDGDQIQYELLEFVGRRTVPQVFVNGKHIGGSDDLGAALESGQLQKLL 127          
BLAST of FC931336 vs. ExPASy Swiss-Prot
Match: GRXS6_ORYSJ (Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica GN=GRXS6 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.108e-26
Identity = 56/124 (45.16%), Postives = 84/124 (67.74%), Query Frame = 2
Query:  164 SVLTLTIATLLFWASFSGASDKSAEAAFVEKTVSSHKIVIFSKAYCPYCRMAKSVFKELNMGPHVVELDERDDGWNIQDALGEMVGRRTVPRVFMNGKHIGGSDDTVEAYESGKLAQLLGIAAS 535
            + + + +  LL  A    A+   + +AFV+  + S++I IFSK YCPY   AK +F++L   P++VELD R+DG  IQ  L ++VGR TVP+VF+NG+H+GGSDDT  A+ +G+L +LLG + S
Sbjct:    6 AAVPIAVFLLLVLAEADPAAATRSPSAFVQNAIYSNRITIFSKTYCPYSMRAKRIFRDLKENPYIVELDLREDGREIQSVLLDLVGRHTVPQVFVNGQHVGGSDDTANAHSNGQLQKLLGNSQS 129          
BLAST of FC931336 vs. ExPASy Swiss-Prot
Match: GRXC6_ORYSJ (Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN=GRXC6 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.464e-19
Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = 2
Query:  242 AFVEKTVSSHKIVIFSKAYCPYCRMAKSVFKELNMGPHVVELDERDDGWNIQDALGEMVGRRTVPRVFMNGKHIGGSDDTVEAYESGKLAQLL 520
            A  ++TV+S  +V++SK+YCP+C   K +F++L      +ELD   DG  +Q AL E  G+RTVP VF+NGKHIGG DDT+     GKL  LL
Sbjct:    4 AKAKETVASAPVVVYSKSYCPFCVRVKKLFEQLGATFKAIELDGESDGSELQSALAEWTGQRTVPNVFINGKHIGGCDDTLALNNEGKLVPLL 96          
BLAST of FC931336 vs. ExPASy Swiss-Prot
Match: GLRX_VERFO (Glutaredoxin OS=Vernicia fordii PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.258e-19
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 2
Query:  251 EKTVSSHKIVIFSKAYCPYCRMAKSVFKELNMGPHVVELDERDDGWNIQDALGEMVGRRTVPRVFMNGKHIGGSDDTVEAYESGKLAQLL 520
            ++ VSS+ +V+FSK +CPYC   K +  +L     V+ELD   DG ++Q+AL E  G+RTVP VF+ GKHIGG D T   ++ GKL  LL
Sbjct:    7 QELVSSNSVVVFSKTFCPYCTSVKQLLNQLGAQFKVIELDSESDGSDLQNALAEWTGQRTVPNVFIGGKHIGGCDKTTGMHQEGKLIPLL 96          
BLAST of FC931336 vs. ExPASy Swiss-Prot
Match: GLRX_DICDI (Glutaredoxin OS=Dictyostelium discoideum GN=grxA PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.561e-19
Identity = 45/91 (49.45%), Postives = 60/91 (65.93%), Query Frame = 2
Query:  248 VEKTVSSHKIVIFSKAYCPYCRMAKSVFKELNMGPHVVELDERDDGWNIQDALGEMVGRRTVPRVFMNGKHIGGSDDTVEAYESGKLAQLL 520
            V+  + +HK++IFSK  CPYC   K +FK+L + P VVELD   DG  +Q A G++ G RTVP+VF+N K IGG D T + +  GKL  LL
Sbjct:    4 VKALIKAHKLIIFSKTTCPYCISVKDLFKKLKVVPFVVELDLESDGSELQSAAGQISGVRTVPQVFINEKFIGGCDATTKLHSQGKLIPLL 94          
BLAST of FC931336 vs. ExPASy Swiss-Prot
Match: GLRX_RICCO (Glutaredoxin OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.263e-19
Identity = 45/90 (50.00%), Postives = 56/90 (62.22%), Query Frame = 2
Query:  251 EKTVSSHKIVIFSKAYCPYCRMAKSVFKELNMGPHVVELDERDDGWNIQDALGEMVGRRTVPRVFMNGKHIGGSDDTVEAYESGKLAQLL 520
            ++ VSS+ +V+FSK YCPYC   K +  +L     VVELD   DG  IQ AL E  G+RTVP VF+ GKHIGG D T   +  G+L  LL
Sbjct:    7 KELVSSNAVVVFSKTYCPYCTSVKKLLDQLGAKYKVVELDTESDGSEIQTALAEWTGQRTVPNVFIGGKHIGGCDSTTAKHSQGQLVPLL 96          
BLAST of FC931336 vs. ExPASy Swiss-Prot
Match: GLRX2_BOVIN (Glutaredoxin-2, mitochondrial OS=Bos taurus GN=GLRX2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.263e-19
Identity = 44/91 (48.35%), Postives = 64/91 (70.33%), Query Frame = 2
Query:  248 VEKTVSSHKIVIFSKAYCPYCRMAKSVFKELNMGPHVVELDERDDGWNIQDALGEMVGRRTVPRVFMNGKHIGGSDDTVEAYESGKLAQLL 520
            +++T+S++ +VIFSK  C YC MAK++F ++N+   VVELD  + G   QDAL +M G RTVPR+F+NG  IGG+ DT   ++ GKL  L+
Sbjct:   54 IQETISNNCVVIFSKTSCSYCTMAKNLFHDMNVNYKVVELDMLEYGSQFQDALHKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 144          
BLAST of FC931336 vs. ExPASy Swiss-Prot
Match: GLRX2_MOUSE (Glutaredoxin-2, mitochondrial OS=Mus musculus GN=Glrx2 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.239e-18
Identity = 43/91 (47.25%), Postives = 63/91 (69.23%), Query Frame = 2
Query:  248 VEKTVSSHKIVIFSKAYCPYCRMAKSVFKELNMGPHVVELDERDDGWNIQDALGEMVGRRTVPRVFMNGKHIGGSDDTVEAYESGKLAQLL 520
            +++T+S++ +VIFSK  C YC MAK +F ++N+    VELD  + G   QDAL +M G RTVPR+F+NG+ IGG+ DT   ++ GKL  L+
Sbjct:   53 IQETISNNCVVIFSKTSCSYCSMAKKIFHDMNVNYKAVELDMLEYGNQFQDALHKMTGERTVPRIFVNGRFIGGAADTHRLHKEGKLLPLV 143          
The following BLAST results are available for this feature:
BLAST of FC931336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
GRXC4_ARATH1.230e-4266.40Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 P... [more]
GRXC8_ORYSJ2.033e-3768.22Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN... [more]
GRXC3_ARATH9.464e-2752.94Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 P... [more]
GRXS6_ORYSJ2.108e-2645.16Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. j... [more]
GRXC6_ORYSJ1.464e-1948.39Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN... [more]
GLRX_VERFO4.258e-1947.78Glutaredoxin OS=Vernicia fordii PE=3 SV=1[more]
GLRX_DICDI5.561e-1949.45Glutaredoxin OS=Dictyostelium discoideum GN=grxA P... [more]
GLRX_RICCO7.263e-1950.00Glutaredoxin OS=Ricinus communis PE=3 SV=1[more]
GLRX2_BOVIN7.263e-1948.35Glutaredoxin-2, mitochondrial OS=Bos taurus GN=GLR... [more]
GLRX2_MOUSE1.239e-1847.25Glutaredoxin-2, mitochondrial OS=Mus musculus GN=G... [more]

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Properties
Property NameValue
Genbank descriptionC34104A07EF PostHarvP1 Citrus clementina cDNA clone C34104A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931336 ID=FC931336; Name=FC931336; organism=Citrus clementina; type=EST; length=646bp
GATACACAAGAGTATAAAAGTCTCTTATAAAGTGAATTTGTGCGCTAATA
TGCATTTACGGAATATATGTGGAAAACCAACTCCGCTGCCTGCACCTCTT
CTGAGCGGTCTCCGGTGCAGCATCAGACTCATCATGACGGCGAGGAGACT
AACACCAATGATCTCAGTACTAACGTTAACGATTGCGACGCTTCTCTTCT
GGGCATCATTTTCCGGAGCTTCTGACAAATCTGCAGAAGCTGCTTTTGTC
GAAAAGACTGTCTCTTCCCACAAGATCGTCATCTTCTCCAAGGCTTATTG
CCCATATTGTAGGATGGCTAAATCTGTATTCAAAGAGTTGAACATGGGTC
CTCATGTAGTCGAGCTTGATGAGAGAGATGATGGCTGGAACATTCAGGAT
GCCTTGGGTGAGATGGTTGGGCGGCGCACTGTACCACGGGTGTTCATGAA
TGGAAAGCACATTGGAGGCTCAGATGATACTGTTGAAGCTTATGAAAGTG
GGAAACTAGCTCAGCTTTTAGGTATTGCAGCAAGCGGCCCAGATGATCTC
TAATTGCTTCGAGATCAATGCCAATTGGCGATCTGTCTAAAGCTTTGATG
CACTACTCTGAAGAACGAGGATGATCTCTGAGGCCATAATAGGATT
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