FC931338

Overview
NameFC931338
Unique NameFC931338
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931338_ssr86 microsatellite FC931338_ssr86:86..100. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15312 contig Ccv1_Contig15312:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931338 vs. ExPASy Swiss-Prot
Match: ADAT2_BOVIN (tRNA-specific adenosine deaminase 2 OS=Bos taurus GN=DEADC1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.765e-22
Identity = 56/127 (44.09%), Postives = 76/127 (59.84%), Query Frame = 1
Query:  241 DTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIXXXXXXXXXXXXXXXXXXMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSD 621
            +T  +M+ A+Q AK ALD+ EVPVGC+++ + +V+                  M AID  LD  ++ G S SE+   F    LYVT EPCIMCAAAL ++ I  V YGC NE+FGGCGS+L +  +D
Sbjct:   21 ETEKWMEQAMQMAKDALDNTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQALDWCRRRGRSPSEV---FEHTVLYVTVEPCIMCAAALRLMRIPLVVYGCQNERFGGCGSVLDIASAD 144          

HSP 2 Score: 22.3274 bits (46), Expect = 3.765e-22
Identity = 9/15 (60.00%), Postives = 10/15 (66.67%), Query Frame = 3
Query:  663 FQCTGGVMASEAVSL 707
            FQCT G  A EAV +
Sbjct:  152 FQCTPGYRAEEAVEM 166          
BLAST of FC931338 vs. ExPASy Swiss-Prot
Match: ADAT2_HUMAN (tRNA-specific adenosine deaminase 2 OS=Homo sapiens GN=ADAT2 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.410e-21
Identity = 54/127 (42.52%), Postives = 78/127 (61.42%), Query Frame = 1
Query:  241 DTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIXXXXXXXXXXXXXXXXXXMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSD 621
            +T  +M+ A+  AK AL++ EVPVGC+++ + +V+                  M AID +LD  +++G S SE+   F    LYVT EPCIMCAAAL ++ I  V YGC NE+FGGCGS+L++  +D
Sbjct:   21 ETEKWMEEAMHMAKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSPSEV---FEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASAD 144          
BLAST of FC931338 vs. ExPASy Swiss-Prot
Match: ADAT2_MOUSE (tRNA-specific adenosine deaminase 2 OS=Mus musculus GN=Adat2 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.152e-20
Identity = 53/127 (41.73%), Postives = 78/127 (61.42%), Query Frame = 1
Query:  241 DTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIXXXXXXXXXXXXXXXXXXMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSD 621
            +T  +M+ A++ AK AL+++EVPVGC+++ + +V+                  M AID +LD   ++G S S +   F    LYVT EPCIMCAAAL ++ I  V YGC NE+FGGCGS+L++  +D
Sbjct:   21 ETEKWMEEAMRMAKEALENIEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCHQHGQSPSTV---FEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASAD 144          

HSP 2 Score: 20.7866 bits (42), Expect = 1.152e-20
Identity = 9/15 (60.00%), Postives = 9/15 (60.00%), Query Frame = 3
Query:  663 FQCTGGVMASEAVSL 707
            FQC  G  A EAV L
Sbjct:  152 FQCIPGYRAEEAVEL 166          
BLAST of FC931338 vs. ExPASy Swiss-Prot
Match: ADAT2_XENTR (tRNA-specific adenosine deaminase 2 OS=Xenopus tropicalis GN=adat2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19
Identity = 51/119 (42.86%), Postives = 69/119 (57.98%), Query Frame = 1
Query:  253 FMDLAIQQAKLALDSLEVPVGCVILEDGKVIXXXXXXXXXXXXXXXXXXMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSL 609
            +M  A Q A+ AL++ EVPVGC+++ D +V+                  M AID +LD  +KN     ++   F    LYVT EPCIMCA AL +L I  V YGC NE+FGGCGS+L++
Sbjct:    8 WMHKAFQMAQDALNNGEVPVGCLMVYDNQVVGKGRNEVNETKNATRHAEMVAIDQVLDWCEKNSKKSRDV---FENIVLYVTVEPCIMCAGALRLLKIPLVVYGCRNERFGGCGSVLNV 123          
BLAST of FC931338 vs. ExPASy Swiss-Prot
Match: ADAT2_XENLA (tRNA-specific adenosine deaminase 2 OS=Xenopus laevis GN=adat2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.312e-18
Identity = 50/123 (40.65%), Postives = 69/123 (56.10%), Query Frame = 1
Query:  253 FMDLAIQQAKLALDSLEVPVGCVILEDGKVIXXXXXXXXXXXXXXXXXXMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSD 621
            +M  A Q A+ AL++ EVPVGC+++   +V+                  M AID +LD  + N    +++   F    LYVT EPCIMCA AL +L I  V YGC NE+FGGCGS+L++   D
Sbjct:   13 WMHKAFQMAQDALNNGEVPVGCLMVYGNQVVGKGRNEVNETKNATQHAEMVAIDQVLDWCEMNSKKSTDV---FENIVLYVTVEPCIMCAGALRLLKIPLVVYGCRNERFGGCGSVLNVSGDD 132          
BLAST of FC931338 vs. ExPASy Swiss-Prot
Match: ADAT2_DANRE (tRNA-specific adenosine deaminase 2 OS=Danio rerio GN=adat2 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.801e-16
Identity = 49/119 (41.18%), Postives = 68/119 (57.14%), Query Frame = 1
Query:  253 FMDLAIQQAKLALDSLEVPVGCVILEDGKVIXXXXXXXXXXXXXXXXXXMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSL 609
            +M  A   A  AL++ EVPVGC+++ + ++I                  M A+D +LD W +  L + +  E   +  LYVT EPCIMCAAAL +L I  V YGC NE+FGGCGS+L +
Sbjct:   24 WMAKAFDMAVEALENGEVPVGCLMVYNNEIIGKGRNEVNETKNATRHAEMVALDQVLD-WCR--LREKDCKEVCEQTVLYVTVEPCIMCAAALRLLRIPFVVYGCKNERFGGCGSVLDV 139          
BLAST of FC931338 vs. ExPASy Swiss-Prot
Match: TAD2_SCHPO (tRNA-specific adenosine deaminase subunit tad2 OS=Schizosaccharomyces pombe GN=tad2 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.423e-13
Identity = 40/106 (37.74%), Postives = 55/106 (51.89%), Query Frame = 1
Query:  307 PVGCVILEDGKVIXXXXXXXXXXXXXXXXXXMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDS 624
            P  CV +  G+VI                  + AI+ +L+ +          A  F +  LYVT EPC+MCAAAL  L IK VY+GC N++FGGCGS+ S++   S
Sbjct:  238 PGSCVFVYKGEVIGRGFNETNCSLSGIRHAELIAIEKILEHYP---------ASVFKETTLYVTVEPCLMCAAALKQLHIKAVYFGCGNDRFGGCGSVFSINKDQS 334          
BLAST of FC931338 vs. ExPASy Swiss-Prot
Match: Y196_STRP8 (Uncharacterized deaminase spyM18_0196 OS=Streptococcus pyogenes serotype M18 GN=spyM18_0196 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 40/126 (31.75%), Postives = 65/126 (51.59%), Query Frame = 1
Query:  253 FMDLAIQQAKLALDSLEVPVGCVILEDGKVIXXXXXXXXXXXXXXXXXXMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKM 630
            FM  A+++A+ +L   E+P+GCVI++DG++I                  M AI         N  +  E   +     L+VT EPC+MC+ A+ +  I  V YG +N+KFGG  S+  + L+D ++
Sbjct:   11 FMQEALKEAEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAI---------NEANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQI-LTDERL 126          
BLAST of FC931338 vs. ExPASy Swiss-Prot
Match: TADA_STRP6 (tRNA-specific adenosine deaminase OS=Streptococcus pyogenes serotype M6 GN=tadA PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 40/126 (31.75%), Postives = 65/126 (51.59%), Query Frame = 1
Query:  253 FMDLAIQQAKLALDSLEVPVGCVILEDGKVIXXXXXXXXXXXXXXXXXXMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKM 630
            FM  A+++A+ +L   E+P+GCVI++DG++I                  M AI         N  +  E   +     L+VT EPC+MC+ A+ +  I  V YG +N+KFGG  S+  + L+D ++
Sbjct:   11 FMQEALKEAEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAI---------NEANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQI-LTDERL 126          
BLAST of FC931338 vs. ExPASy Swiss-Prot
Match: TADA_STRP3 (tRNA-specific adenosine deaminase OS=Streptococcus pyogenes serotype M3 GN=tadA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 40/126 (31.75%), Postives = 65/126 (51.59%), Query Frame = 1
Query:  253 FMDLAIQQAKLALDSLEVPVGCVILEDGKVIXXXXXXXXXXXXXXXXXXMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKM 630
            FM  A+++A+ +L   E+P+GCVI++DG++I                  M AI         N  +  E   +     L+VT EPC+MC+ A+ +  I  V YG +N+KFGG  S+  + L+D ++
Sbjct:   11 FMQEALKEAEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAI---------NEANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQI-LTDERL 126          
The following BLAST results are available for this feature:
BLAST of FC931338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ADAT2_BOVIN3.765e-2244.09tRNA-specific adenosine deaminase 2 OS=Bos taurus ... [more]
ADAT2_HUMAN5.410e-2142.52tRNA-specific adenosine deaminase 2 OS=Homo sapien... [more]
ADAT2_MOUSE1.152e-2041.73tRNA-specific adenosine deaminase 2 OS=Mus musculu... [more]
ADAT2_XENTR5.064e-1942.86tRNA-specific adenosine deaminase 2 OS=Xenopus tro... [more]
ADAT2_XENLA7.312e-1840.65tRNA-specific adenosine deaminase 2 OS=Xenopus lae... [more]
ADAT2_DANRE1.801e-1641.18tRNA-specific adenosine deaminase 2 OS=Danio rerio... [more]
TAD2_SCHPO5.423e-1337.74tRNA-specific adenosine deaminase subunit tad2 OS=... [more]
Y196_STRP84.591e-1231.75Uncharacterized deaminase spyM18_0196 OS=Streptoco... [more]
TADA_STRP64.591e-1231.75tRNA-specific adenosine deaminase OS=Streptococcus... [more]
TADA_STRP34.591e-1231.75tRNA-specific adenosine deaminase OS=Streptococcus... [more]

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Properties
Property NameValue
Genbank descriptionC34104A09EF PostHarvP1 Citrus clementina cDNA clone C34104A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931338 ID=FC931338; Name=FC931338; organism=Citrus clementina; type=EST; length=709bp
GAACTTAGAAGTTAAATAAAATCCTCCCAAAGAAAATTCCCAGCGTAGTA
TGCAAATCTCTGACATTTATATATAAATCTCTTTCATTTTATTTTATTTT
AAATTTTTGCTTAATTCGTTTATGAGTAGCCAGTAACTGTTAGATTGTAT
AGACTGTGTTGTGATGCATGCAAAGTGTTTGATGAAATGCTTGTGAGAGT
TGATTTATAGATGGCTTCTTCTGGGGAAGAGTGGTCTCCTGATACTCTTG
CATTCATGGATCTTGCAATACAACAGGCAAAACTTGCTTTGGACTCCCTT
GAAGTGCCAGTTGGATGTGTGATTCTGGAAGATGGAAAGGTCATTGCTGC
TGGTCGAAATCGAACTACTGAGACAAGAAACGCTACAAGGCATGCAGAAA
TGGAAGCTATTGATGTTCTTCTTGACCAGTGGCAGAAAAATGGACTCTCA
CAGTCAGAGATTGCTGAAAAATTCTCGAAATGCTGTCTTTATGTAACATG
TGAACCATGTATTATGTGTGCTGCTGCATTATCGATTCTTGGTATAAAGG
AAGTATACTATGGATGTGCAAATGAGAAATTTGGAGGATGTGGATCGATA
CTGTCTCTGCATTTGAGTGACTCTAAGATGCTGAATAGTGGTGATGTTCT
TGGAAGGAAAGGTTTCAATGTACAGGAGGAGTAATGGCATCGGAAGCAGT
CTCTCTGTT
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