FC931341

Overview
NameFC931341
Unique NameFC931341
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12735 contig Ccv1_Contig12735:57..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931341 vs. ExPASy Swiss-Prot
Match: KTI12_DANRE (Protein KTI12 homolog OS=Danio rerio GN=kti12 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.816e-30
Identity = 68/158 (43.04%), Postives = 96/158 (60.76%), Query Frame = 2
Query:  218 MALVVICGQPSSGKSLAATCXXXXXXXXXXXXTVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRYRWDSPLFXL 691
            M L+++CG P SGK+  A               V I+ +    +D+N  YA    EKNLRG LR+EV+R V+KD+I+I+DSLN IKGYRYEL+CL +     +C++Y     D   +WNK+R  + ++ Y  +I + L+ RFE PD R RWDSPLF +
Sbjct:    1 MPLILMCGYPCSGKTRRAQ-ELRDYFTQNTGRKVHIVGDEDQGIDKNSVYADSQKEKNLRGALRAEVERKVNKDDIVILDSLNYIKGYRYELFCLIKHTQTPHCLVYSLTSADLSSEWNKDR--EADSQYTQEILDALILRFEAPDSRNRWDSPLFTI 155          
BLAST of FC931341 vs. ExPASy Swiss-Prot
Match: KTI12_XENLA (Protein KTI12 homolog OS=Xenopus laevis GN=kti12 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.635e-28
Identity = 67/156 (42.95%), Postives = 96/156 (61.54%), Query Frame = 2
Query:  218 MALVVICGQPSSGKSLAATCXXXXXXXXXXXXTVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRYRWDSPLF 685
            M L+++CG P SGKS  +               V II +    +DRN  YA    EK+LRG LR+ V+R ++K++++I+DSLN IKGYRYEL+CL +     +C+++C    +    WN+ R +K E  Y+ +IF+ LV+RFE PD R RWDSPLF
Sbjct:    1 MPLILLCGFPCSGKS--SRSQELQEHLEQSGRKVHIIGDHVLGVDRNAVYADSREEKDLRGSLRAAVERKLNKEDVVILDSLNYIKGYRYELFCLIKHVQTPHCLIHCITSPEVSSTWNQHR-DKNE-QYNQEIFDSLVQRFEFPDSRNRWDSPLF 152          
BLAST of FC931341 vs. ExPASy Swiss-Prot
Match: KTI12_SCHPO (Protein kti12 OS=Schizosaccharomyces pombe GN=kti12 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.389e-21
Identity = 57/163 (34.97%), Postives = 91/163 (55.83%), Query Frame = 2
Query:  218 MALVVICGQPSSGKSL-------AATCXXXXXXXXXXXXTVRIIDEASFHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRYRWDSPLF 685
            M L+++ G PSSGK+        A                V II++ S ++++ ++Y     EK  RG+L S V R +SK   +I D+LN IKG+RY+L+C +++    +CV++  + +D CRK+N  +    E  Y D + E L+ R+E+P+   RWDSPLF
Sbjct:    1 MPLIIVSGYPSSGKTTRSNELKKALEDRIHQNIDNTKDYRVIIINDESLNIEK-ETYRESKNEKAARGLLYSAVQRELSKSTFVICDALNYIKGFRYQLYCESKSMYTTHCVIHVAVPQDLCRKFNSNK----EQPYPDDVLEQLMFRYEEPNGMTRWDSPLF 158          
BLAST of FC931341 vs. ExPASy Swiss-Prot
Match: KTI12_YEAST (Protein KTI12 OS=Saccharomyces cerevisiae GN=KTI12 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.947e-16
Identity = 50/163 (30.67%), Postives = 80/163 (49.08%), Query Frame = 2
Query:  218 MALVVICGQPSSGKSLAATCXXXXXXXXXXXXTVRIIDEASFHLD-----RNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYCDLEEDHCRKWNKERHEKGEAAYDDKIFEDLVRRFEKPDRRYRWDSPLFXL 691
            M LV+  G P SGK+  A                      ++H D     ++  Y +   E+ LR  + S V R +SK+ I+IVDSLN IKG+RY+L C  +     +CV+      +   +WNK  +      ++ ++   L++R+E+P+   RWDSPLF +
Sbjct:    1 MPLVLFTGYPCSGKTTLAKHLVQLLQSKIDATPSLSKYSITYHSDESLGIKHSDYITSQDERKLRSEIISAVKRDLSKNKIVIVDSLNYIKGFRYQLHCEVKNLSTTFCVIQTLCPPETIFEWNKTSNPN---PWEPELLNQLIQRYEEPNSSNRWDSPLFAI 160          
BLAST of FC931341 vs. ExPASy Swiss-Prot
Match: KTI12_MOUSE (Protein KTI12 homolog OS=Mus musculus GN=Kti12 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 47/109 (43.12%), Postives = 66/109 (60.55%), Query Frame = 2
Query:  218 MALVVICGQPSSGKSLAATCXXXXXXXXXXXXTVRIIDEASFHLDRNQS-YASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYC 541
            M LVV+CG PSSGKS                  V ++D+AS    ++ + Y     EK LR  LR+ V+R +S+ +++I+DS+N IKG+RYEL+CLARAA    C+LYC
Sbjct:    1 MPLVVVCGLPSSGKSQRTE--ELRRALASEGRAVYVVDDASVLGAQDPTVYGDSAGEKALRAALRAAVERRLSRQDVVILDSVNYIKGFRYELYCLARAARTPLCLLYC 107          
BLAST of FC931341 vs. ExPASy Swiss-Prot
Match: KTI12_HUMAN (Protein KTI12 homolog OS=Homo sapiens GN=KTI12 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.148e-15
Identity = 47/109 (43.12%), Postives = 64/109 (58.72%), Query Frame = 2
Query:  218 MALVVICGQPSSGKSLAATCXXXXXXXXXXXXTVRIIDEAS-FHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYC 541
            M LVV CG P SGKS  A               V ++D+A+    +    Y     EK LRG LR+ V+R +S+ +++I+DSLN IKG+RYEL+CLARAA    C++YC
Sbjct:    1 MPLVVFCGLPYSGKSRRAE--ELRVALAAEGRAVYVVDDAAVLGAEDPAVYGDSAREKALRGALRASVERRLSRHDVVILDSLNYIKGFRYELYCLARAARTPLCLVYC 107          
BLAST of FC931341 vs. ExPASy Swiss-Prot
Match: KTI12_RAT (Protein KTI12 homolog OS=Rattus norvegicus GN=Kti12 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.500e-15
Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = 2
Query:  218 MALVVICGQPSSGKSLAATCXXXXXXXXXXXXTVRIIDEASFHLDRNQS-YASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYC 541
            M LVV+CG PSSGKS                 +V ++D+AS    ++ + Y     EK LR  LR+ V+R +S+ +++I+DS+N IKG+RYEL+CLARA     C++YC
Sbjct:    1 MPLVVVCGLPSSGKSRRTE--ELRRALTGEGRSVYVVDDASVLGAQDSTVYGDSAGEKALRAALRAAVERRLSRQDVVILDSMNYIKGFRYELYCLARAVRTPLCLVYC 107          
BLAST of FC931341 vs. ExPASy Swiss-Prot
Match: KTI12_BOVIN (Protein KTI12 homolog OS=Bos taurus GN=KTI12 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.959e-15
Identity = 46/109 (42.20%), Postives = 64/109 (58.72%), Query Frame = 2
Query:  218 MALVVICGQPSSGKSLAATCXXXXXXXXXXXXTVRIIDEAS-FHLDRNQSYASMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLNSIKGYRYELWCLARAAGIRYCVLYC 541
            M LVV CG P SGKS                  V+++D+A+    +    Y     EK LRG LR+ V+R +S+ +++I+DSLN IKG+RYEL+CLARAA    C++YC
Sbjct:    1 MPLVVFCGLPYSGKSRRVE--ELRAALEAEGRAVQVVDDAAVLGAEDATVYGDSAREKALRGALRAAVERLLSRQDVVILDSLNYIKGFRYELYCLARAARTPICLVYC 107          
The following BLAST results are available for this feature:
BLAST of FC931341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
KTI12_DANRE2.816e-3043.04Protein KTI12 homolog OS=Danio rerio GN=kti12 PE=2... [more]
KTI12_XENLA2.635e-2842.95Protein KTI12 homolog OS=Xenopus laevis GN=kti12 P... [more]
KTI12_SCHPO2.389e-2134.97Protein kti12 OS=Schizosaccharomyces pombe GN=kti1... [more]
KTI12_YEAST3.947e-1630.67Protein KTI12 OS=Saccharomyces cerevisiae GN=KTI12... [more]
KTI12_MOUSE5.155e-1643.12Protein KTI12 homolog OS=Mus musculus GN=Kti12 PE=... [more]
KTI12_HUMAN1.148e-1543.12Protein KTI12 homolog OS=Homo sapiens GN=KTI12 PE=... [more]
KTI12_RAT1.500e-1541.28Protein KTI12 homolog OS=Rattus norvegicus GN=Kti1... [more]
KTI12_BOVIN1.959e-1542.20Protein KTI12 homolog OS=Bos taurus GN=KTI12 PE=2 ... [more]
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Properties
Property NameValue
Genbank descriptionC34104A12EF PostHarvP1 Citrus clementina cDNA clone C34104A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931341 ID=FC931341; Name=FC931341; organism=Citrus clementina; type=EST; length=703bp
GACTTCTTTGTATTGTGAAAGAGAGAGAACGACAAATTCACTCGCACACA
CCCACGCCCACGCTGCCGCCGCTGTCACTTTCGTTCAAGTGTGCCAGCGC
TGCAGCTTCTAGCCGTTCTCGATTTGCTTCCTCGTTCCAGTTGCTGCCGC
CTCTGCGGTCGCTGCCTCCGGCTTCGTTCGCTGCCGTCAGCGCCATAAGG
GCCAACTGTTTTGACTGATGGCATTGGTTGTAATCTGTGGGCAACCGAGC
AGTGGAAAGTCACTGGCAGCAACATGTCTAGCTGAAGCTCTAAAAGAATC
AGAGGCAAAAGAGACTGTCAGGATTATTGATGAAGCTTCTTTTCATCTTG
ATCGCAATCAGAGCTATGCCAGTATGCCTGCAGAGAAGAATTTGCGTGGA
GTTCTCAGGTCTGAAGTTGATAGATCTGTGTCCAAAGATAATATTATAAT
AGTAGATTCTTTGAACAGTATCAAGGGCTACAGATATGAGTTATGGTGCT
TGGCTCGTGCTGCAGGGATTAGATACTGTGTTCTGTATTGCGACTTGGAA
GAAGATCATTGTAGAAAATGGAATAAAGAGCGCCATGAGAAAGGAGAAGC
CGCTTATGATGATAAGATATTTGAAGATTTGGTAAGAAGGTTCGAGAAGC
CAGATAGAAGATATCGGTGGGATTCCCCTTTGTTTNGACTGTGCCCATAT
AAG
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