FC931342

Overview
NameFC931342
Unique NameFC931342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5114 contig Ccv1_Contig5114:1..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931342 vs. ExPASy Swiss-Prot
Match: RS103_ARATH (40S ribosomal protein S10-3 OS=Arabidopsis thaliana GN=RPS10C PE=2 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 6.204e-44
Identity = 83/97 (85.57%), Postives = 90/97 (92.78%), Query Frame = 1
Query:   97 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYPNLPSEIVPATLKKQAKP 387
            MII E NR+EI KYLF+EGVC+AKKD+NLAKHP IDVPNLQVIKLMQSFKSKEYVRETFAWMHYYW+LTNEGIEFLR Y NLPS++VPATLKK AKP
Sbjct:    1 MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97          
BLAST of FC931342 vs. ExPASy Swiss-Prot
Match: RS101_ARATH (40S ribosomal protein S10-1 OS=Arabidopsis thaliana GN=RPS10A PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.103e-44
Identity = 83/97 (85.57%), Postives = 89/97 (91.75%), Query Frame = 1
Query:   97 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYPNLPSEIVPATLKKQAKP 387
            MII E NRREI KYLF+EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKSKEYVRETFAWMHYYW+LTNEGIEFLR Y NLPS++VPATLKK AKP
Sbjct:    1 MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97          
BLAST of FC931342 vs. ExPASy Swiss-Prot
Match: RS10_ORYSJ (40S ribosomal protein S10 OS=Oryza sativa subsp. japonica GN=RPS10 PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 1.058e-43
Identity = 83/97 (85.57%), Postives = 89/97 (91.75%), Query Frame = 1
Query:   97 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYPNLPSEIVPATLKKQAKP 387
            MIIP+KNR EI KYLFQEGV YAKKDYNLAKHP+IDVPNLQVIKLMQSFKSKEYVRETF+W +YYWYLTN+GIE LR Y NLPSEIVPATLKK A+P
Sbjct:    1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARP 97          
BLAST of FC931342 vs. ExPASy Swiss-Prot
Match: RS102_ARATH (40S ribosomal protein S10-2 OS=Arabidopsis thaliana GN=RPS10B PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.420e-41
Identity = 82/98 (83.67%), Postives = 89/98 (90.82%), Query Frame = 1
Query:   97 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYPNLPSEIVPATLKKQAKP 387
            MII E NRREISKYLF+EGV +AKKD+NL +HP I+ VPNLQVIKLMQSFKSKEYVRETFAWMHYYW+LTNEGI+FLR Y NLPSEIVPATLKKQ KP
Sbjct:    1 MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKP 98          
BLAST of FC931342 vs. ExPASy Swiss-Prot
Match: RS10_SPOFR (40S ribosomal protein S10 OS=Spodoptera frugiperda GN=RpS10 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.697e-30
Identity = 60/97 (61.86%), Postives = 79/97 (81.44%), Query Frame = 1
Query:   97 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYPNLPSEIVPATLKKQAK 384
            M++P++NR  I +YLF+EGV  AKKDY+  KHP+++ +PNLQVIK MQS KS+ YV+E FAW H+YWYLTNEGIE+LR + +LP EIVPATLK+  +
Sbjct:    1 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 97          
BLAST of FC931342 vs. ExPASy Swiss-Prot
Match: RS10_LUMRU (40S ribosomal protein S10 OS=Lumbricus rubellus GN=RPS10 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.697e-30
Identity = 60/97 (61.86%), Postives = 76/97 (78.35%), Query Frame = 1
Query:   97 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYPNLPSEIVPATLKKQAKP 387
            M++ +KNR  I +YLF+EGV  AKKD++L KH EIDVPNL VI+ MQS  S+ YV+E F W HYYWYL NEGI++LR + +LP EIVPATLK+Q +P
Sbjct:    1 MLMSKKNRVMIYEYLFKEGVLVAKKDFHLPKHGEIDVPNLHVIRAMQSLVSRGYVKEQFCWRHYYWYLQNEGIQYLRDFLHLPPEIVPATLKRQTRP 97          
BLAST of FC931342 vs. ExPASy Swiss-Prot
Match: RS10_ICTPU (40S ribosomal protein S10 OS=Ictalurus punctatus GN=rps10 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.305e-29
Identity = 61/100 (61.00%), Postives = 79/100 (79.00%), Query Frame = 1
Query:   97 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYPNLPSEIVPATLKKQAKP 387
            M++P+KNR  I + LF+EGV  AKKD +LAKHPE+   +VPNL V+K MQS KS  YV+E FAW H+YWYLTNEGI++LR + +LP EIVPATL++Q +P
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHLAKHPELADKNVPNLHVMKAMQSLKSCGYVKEQFAWRHFYWYLTNEGIQYLRDFLHLPPEIVPATLRRQTRP 100          
BLAST of FC931342 vs. ExPASy Swiss-Prot
Match: RS10_RAT (40S ribosomal protein S10 OS=Rattus norvegicus GN=Rps10 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.772e-28
Identity = 59/101 (58.42%), Postives = 77/101 (76.24%), Query Frame = 1
Query:   97 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYPNLPSEIVPATLKKQAKPT 390
            M++P+KNR  I + LF+EGV  AKKD ++ KHPE+   +VPNL V+K MQS KS+ YV+E FAW H+YWYLTNEGI++LR Y +LP EIVPATL++    T
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPET 101          
BLAST of FC931342 vs. ExPASy Swiss-Prot
Match: RS10_MOUSE (40S ribosomal protein S10 OS=Mus musculus GN=Rps10 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.772e-28
Identity = 59/101 (58.42%), Postives = 77/101 (76.24%), Query Frame = 1
Query:   97 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYPNLPSEIVPATLKKQAKPT 390
            M++P+KNR  I + LF+EGV  AKKD ++ KHPE+   +VPNL V+K MQS KS+ YV+E FAW H+YWYLTNEGI++LR Y +LP EIVPATL++    T
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPET 101          
BLAST of FC931342 vs. ExPASy Swiss-Prot
Match: RS10_HUMAN (40S ribosomal protein S10 OS=Homo sapiens GN=RPS10 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.772e-28
Identity = 59/101 (58.42%), Postives = 77/101 (76.24%), Query Frame = 1
Query:   97 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYPNLPSEIVPATLKKQAKPT 390
            M++P+KNR  I + LF+EGV  AKKD ++ KHPE+   +VPNL V+K MQS KS+ YV+E FAW H+YWYLTNEGI++LR Y +LP EIVPATL++    T
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPET 101          
The following BLAST results are available for this feature:
BLAST of FC931342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS103_ARATH6.204e-4485.5740S ribosomal protein S10-3 OS=Arabidopsis thalian... [more]
RS101_ARATH8.103e-4485.5740S ribosomal protein S10-1 OS=Arabidopsis thalian... [more]
RS10_ORYSJ1.058e-4385.5740S ribosomal protein S10 OS=Oryza sativa subsp. j... [more]
RS102_ARATH6.420e-4183.6740S ribosomal protein S10-2 OS=Arabidopsis thalian... [more]
RS10_SPOFR8.697e-3061.8640S ribosomal protein S10 OS=Spodoptera frugiperda... [more]
RS10_LUMRU8.697e-3061.8640S ribosomal protein S10 OS=Lumbricus rubellus GN... [more]
RS10_ICTPU3.305e-2961.0040S ribosomal protein S10 OS=Ictalurus punctatus G... [more]
RS10_RAT4.772e-2858.4240S ribosomal protein S10 OS=Rattus norvegicus GN=... [more]
RS10_MOUSE4.772e-2858.4240S ribosomal protein S10 OS=Mus musculus GN=Rps10... [more]
RS10_HUMAN4.772e-2858.4240S ribosomal protein S10 OS=Homo sapiens GN=RPS10... [more]

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Properties
Property NameValue
Genbank descriptionC34104B01EF PostHarvP1 Citrus clementina cDNA clone C34104B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931342 ID=FC931342; Name=FC931342; organism=Citrus clementina; type=EST; length=731bp
GAAAGCTAGGGTTTTGGTGCTACAGAAGCGATAAGAGTGTGAGATTTGTT
CTTCCTTGCAGCCTCTTTTCTCAATCATCACCTCTTCATCGCAATCATGA
TCATTCCAGAGAAAAACCGCCGTGAGATCTCCAAGTACCTCTTCCAAGAG
GGTGTGTGCTACGCAAAGAAAGACTACAATTTGGCAAAGCACCCAGAAAT
CGATGTCCCGAATCTACAGGTGATTAAGTTGATGCAGAGCTTCAAGTCAA
AGGAGTACGTCCGCGAGACCTTTGCCTGGATGCATTATTACTGGTACCTT
ACCAATGAAGGCATTGAGTTCCTCAGAGGTTACCCCAATCTGCCTTCTGA
AATTGTCCCCGCCACTTTGAAGAAACAGGCCAAGCCCACAGGTGGTCGTC
CTTTTGGTGGACCAGGGGGTGATCGCCCACGTGGCCCACCACGCTTCGAT
GGTGGAGAGAGAAGATTTGGTGACCGAGATGGATACCGCGGAGCTCCACG
AGGAGCAGGTGGTGATTTTGGTGACAAGGGTGGAGCTCCTGCTGACTATC
AGCCATCTTTCAGGGGCCCTGGTGGAAGGCCAGGGTTTGGTCGTGGCGGT
GGTGGTTTTGGTGCAGGGTCTGNCAGCTCAAATCTTCCTTGAGAGATGAG
TTCTGCATCTTGAGGGATTTAGGAATTTTGGTTACAGATTGCTGAGTGTA
TGGCAGTCTTTGTTTGATTGCTGCATTGTTG
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