FC931343

Overview
NameFC931343
Unique NameFC931343
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931343_ssr140 microsatellite FC931343_ssr140:140..149. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14638 contig Ccv1_Contig14638:484..1214. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931343 vs. ExPASy Swiss-Prot
Match: ASB3_BOVIN (Ankyrin repeat and SOCS box protein 3 OS=Bos taurus GN=ASB3 PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.994e-13
Identity = 31/89 (34.83%), Postives = 52/89 (58.43%), Query Frame = 3
Query:  204 AVQHGDIEFVNDLLEKDSSLLH-QTTVYDRHSALHISAANGQIEILEILLNRSVNPDAVNRYKQTPLMLAAMHGKIYCVKRLLEAGANI 467
            A  H  +E +  L+  DSS  + +T  ++   ALH++A+ G  +I++ILL    +P+A    + TPL LA  +G+I  ++ LL  GAN+
Sbjct:   50 ASYHNSVECLRMLIRADSSENYIKTKTFEGFCALHLAASQGHWKIIQILLEAGADPNATTLEETTPLFLAVENGQIDVLRLLLRYGANV 138          

HSP 2 Score: 40.0466 bits (92), Expect = 1.994e-13
Identity = 26/90 (28.89%), Postives = 43/90 (47.78%), Query Frame = 2
Query:  488 WKNLHYAAYYGHADCVQAILSAAQS---------SPIAVSWGYARF------------VNIRDGRGATPLHLAARQRRPECVHILLDSGA 694
            W  LH A++ G+A+ ++ +L    +         +P+ V+  Y +             VN +    ATPL +AA++   ECV +LL SGA
Sbjct:  147 WNALHQASFQGNAEIIKLLLKKGANKECQDDFGITPLFVAAQYGKLESLSILISSGADVNCQALDKATPLFIAAQEGHTECVELLLSSGA 236          
BLAST of FC931343 vs. ExPASy Swiss-Prot
Match: ASB3_MOUSE (Ankyrin repeat and SOCS box protein 3 OS=Mus musculus GN=Asb3 PE=2 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 2.096e-12
Identity = 31/97 (31.96%), Postives = 52/97 (53.61%), Query Frame = 3
Query:  204 AVQHGDIEFVNDLLEKDSSLLH-QTTVYDRHSALHISAANGQIEILEILLNRSVNPDAVNRYKQTPLMLAAMHGKIYCVKRLLEAGANILMFDSLNG 491
            A  H  +E +  L+  DSS  + +   ++   ALH++ + G  +I +ILL    +P+     + TPL LA   G+I  +K LL+ GAN+    S++G
Sbjct:   50 AAYHNAVECLQMLIHTDSSENYIKAKTFEGFCALHLAVSQGHWKITQILLEAGADPNETTLEETTPLFLAVESGRIDVLKLLLQHGANVNGSHSMSG 146          

HSP 2 Score: 40.0466 bits (92), Expect = 2.096e-12
Identity = 26/92 (28.26%), Postives = 44/92 (47.83%), Query Frame = 2
Query:  482 SQWKNLHYAAYYGHADCVQAILSAAQS---------SPIAVSWGYARF------------VNIRDGRGATPLHLAARQRRPECVHILLDSGA 694
            S W +LH A++ G+A+ ++ +L              +P+ V+  Y +             VN +    ATPL +AA++   +CV +LL SGA
Sbjct:  145 SGWNSLHQASFQGNAETIKLLLKQGADRECQDDFGITPLFVAAQYGKLESMSILISSGANVNCQALDKATPLFIAAQEGHTKCVELLLSSGA 236          
BLAST of FC931343 vs. ExPASy Swiss-Prot
Match: ANR28_HUMAN (Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Homo sapiens GN=ANKRD28 PE=1 SV=4)

HSP 1 Score: 49.6766 bits (117), Expect = 2.670e-12
Identity = 29/75 (38.67%), Postives = 43/75 (57.33%), Query Frame = 3
Query:  294 SALHISAANGQIEILEILLNRSVNPDAVNRYKQTPLMLAAMHGKIYCVKRLLEAGANILMFDSLNGRTCIMLLTT 518
            S LH++A +G  + LE+L+   ++ D  N   +TPL LAA  G + CV  L+  GA+IL+ D +  RT I    T
Sbjct:  585 SPLHLAAYHGHHQALEVLVQSLLDLDVRNSSGRTPLDLAAFKGHVECVDVLINQGASILVKDYILKRTPIHAAAT 659          

HSP 2 Score: 42.743 bits (99), Expect = 2.670e-12
Identity = 22/66 (33.33%), Postives = 36/66 (54.55%), Query Frame = 2
Query:  497 LHYAAYYGHADCVQAILSAAQSSPIAVSWGYARFVNIRDGRGATPLHLAARQRRPECVHILLDSGA 694
            +H AA  GH++C++ ++  A+             V+I+DG G TPL L+      +CV+ LL+ GA
Sbjct:  654 IHAAATNGHSECLRLLIGNAEPQ---------NAVDIQDGNGQTPLMLSVLNGHTDCVYSLLNKGA 710          
BLAST of FC931343 vs. ExPASy Swiss-Prot
Match: ANR52_DANRE (Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Danio rerio GN=ankrd52 PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 2.671e-12
Identity = 29/71 (40.85%), Postives = 39/71 (54.93%), Query Frame = 2
Query:  482 SQWKNLHYAAYYGHADCVQAILSAAQSSPIAVSWGYARFVNIRDGRGATPLHLAARQRRPECVHILLDSGA 694
            S+W  LH AA  GH++C++ +L          S G A  VN+ D  G TPL LA      +CVH+LL+ GA
Sbjct:  645 SKWGPLHVAAANGHSECLRMLLC---------SEGGADLVNVTDAEGQTPLMLAVLGGHTDCVHLLLERGA 706          

HSP 2 Score: 38.891 bits (89), Expect = 2.671e-12
Identity = 27/101 (26.73%), Postives = 45/101 (44.55%), Query Frame = 3
Query:  171 CGASYEHALFTAVQHGDIEFVNDLLEKDSSLLHQTTVYDRHSALHISAANGQIEILEILLNRSVNPDAVNRYKQTPLMLAAMHGKIYCVKRLLEAGANILM 473
            C      A+  A  HG+ + +  LLE   + L         S LH++  +G  E + +L+   V  D  +   ++ L LA+  G   CV+ LL   A+ L+
Sbjct:  540 CNTKGYSAVHYAAAHGNKQNLELLLEMCFNTLGDKESNGSISPLHLAVESGHWECVTVLIESGVCVDVCDPVGRSVLYLASQRGHSRCVELLLSQSASCLL 640          

HSP 3 Score: 51.2174 bits (121), Expect = 4.709e-11
Identity = 44/117 (37.61%), Postives = 55/117 (47.01%), Query Frame = 3
Query:  171 CGASYEHALFTAVQHGDIEFVNDLLEKDSSLL---HQTTVYDRHSALHISAANGQIEILEILLNRSVNPDAVN---RYKQTPLMLAAMHGKIYCVKRLLEAGANILMFDSLNGRTCI 503
            C       L+ A Q G    V  LL + +S L   H++    +   LH++AANG  E L +LL      D VN      QTPLMLA + G   CV  LLE GA   M D   GRT +
Sbjct:  608 CDPVGRSVLYLASQRGHSRCVELLLSQSASCLLAEHRS----KWGPLHVAAANGHSECLRMLLCSEGGADLVNVTDAEGQTPLMLAVLGGHTDCVHLLLERGACPDMKDR-RGRTAL 719          

HSP 4 Score: 36.965 bits (84), Expect = 4.709e-11
Identity = 23/63 (36.51%), Postives = 30/63 (47.62%), Query Frame = 2
Query:  497 LHYAAYYGHADCVQAILSAAQSSPIAVSWGYARFVNIRDGRGATPLHLAARQRRPECVHILLD 685
            LH AA  GHAD +  +LSAA  S             + D  G TP H AA     +C+ +LL+
Sbjct:  752 LHLAASCGHADILSNLLSAADHSQPQDP--------LTDRHGYTPAHWAAYHGHEDCLEVLLE 806          
BLAST of FC931343 vs. ExPASy Swiss-Prot
Match: ANR28_MOUSE (Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Mus musculus GN=Ankrd28 PE=1 SV=1)

HSP 1 Score: 49.2914 bits (116), Expect = 3.470e-12
Identity = 29/75 (38.67%), Postives = 43/75 (57.33%), Query Frame = 3
Query:  294 SALHISAANGQIEILEILLNRSVNPDAVNRYKQTPLMLAAMHGKIYCVKRLLEAGANILMFDSLNGRTCIMLLTT 518
            S LH++A +G  + LE+L+   ++ D  N   +TPL LAA  G + CV  L+  GA+IL+ D +  RT I    T
Sbjct:  552 SPLHLAAYHGHHQALEVLVQSLLDLDVRNSSGRTPLDLAAFKGHVECVDVLINQGASILVKDYVLKRTPIHAAAT 626          

HSP 2 Score: 42.743 bits (99), Expect = 3.470e-12
Identity = 22/66 (33.33%), Postives = 36/66 (54.55%), Query Frame = 2
Query:  497 LHYAAYYGHADCVQAILSAAQSSPIAVSWGYARFVNIRDGRGATPLHLAARQRRPECVHILLDSGA 694
            +H AA  GH++C++ ++  A+             V+I+DG G TPL L+      +CV+ LL+ GA
Sbjct:  621 IHAAATNGHSECLRLLIGNAEPQ---------NAVDIQDGNGQTPLMLSVLNGHTDCVYSLLNKGA 677          

HSP 3 Score: 50.8322 bits (120), Expect = 7.935e-11
Identity = 35/99 (35.35%), Postives = 55/99 (55.56%), Query Frame = 3
Query:  216 GDIEFVNDLLEKDSSLLHQTTVYDRHSALHISAANGQIEILEILLNRSVNPDAVNRYK---QTPLMLAAMHGKIYCVKRLLEAGANILMFDSLNGRTCI 503
            G +E V+ L+ + +S+L +  V  R + +H +A NG  E L +L+  +   +AV+      QTPLML+ ++G   CV  LL  GAN+   D   GRT +
Sbjct:  594 GHVECVDVLINQGASILVKDYVLKR-TPIHAAATNGHSECLRLLIGNAEPQNAVDIQDGNGQTPLMLSVLNGHTDCVYSLLNKGANVDAKDKW-GRTAL 690          

HSP 4 Score: 36.5798 bits (83), Expect = 7.935e-11
Identity = 25/74 (33.78%), Postives = 33/74 (44.59%), Query Frame = 2
Query:  497 LHYAAYYGHADCVQAILSAAQSSPIAVSWGYARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALXCASPVD 718
            LH  A  GH +CV A+L             +     +RD RG TP+HL+A      C HI +    L  A+ VD
Sbjct:  690 LHRGAVTGHEECVDALLQ------------HGAKCLLRDSRGRTPIHLSA-----ACGHIGVLGALLQSATSVD 746          
BLAST of FC931343 vs. ExPASy Swiss-Prot
Match: ASB3_HUMAN (Ankyrin repeat and SOCS box protein 3 OS=Homo sapiens GN=ASB3 PE=1 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 5.959e-12
Identity = 30/89 (33.71%), Postives = 52/89 (58.43%), Query Frame = 3
Query:  204 AVQHGDIEFVNDLLEKDSSLLH-QTTVYDRHSALHISAANGQIEILEILLNRSVNPDAVNRYKQTPLMLAAMHGKIYCVKRLLEAGANI 467
            A  H  +E +  L+  DSS  + +   ++   ALH++A+ G  +I++ILL    +P+A    + TPL LA  +G+I  ++ LL+ GAN+
Sbjct:   50 AAYHNSVECLQMLINADSSENYIKMKTFEGFCALHLAASQGHWKIVQILLEAGADPNATTLEETTPLFLAVENGQIDVLRLLLQHGANV 138          

HSP 2 Score: 36.1946 bits (82), Expect = 5.959e-12
Identity = 24/90 (26.67%), Postives = 43/90 (47.78%), Query Frame = 2
Query:  488 WKNLHYAAYYGHADCVQAILSAAQS---------SPIAVSWGYARF------------VNIRDGRGATPLHLAARQRRPECVHILLDSGA 694
            W +LH A++  +A+ ++ +L    +         +P+ V+  Y +             VN +    ATPL +AA++   +CV +LL SGA
Sbjct:  147 WNSLHQASFQENAEIIKLLLRKGANKECQDDFGITPLFVAAQYGKLESLSILISSGANVNCQALDKATPLFIAAQEGHTKCVELLLSSGA 236          
The following BLAST results are available for this feature:
BLAST of FC931343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ASB3_BOVIN1.994e-1334.83Ankyrin repeat and SOCS box protein 3 OS=Bos tauru... [more]
ASB3_MOUSE2.096e-1231.96Ankyrin repeat and SOCS box protein 3 OS=Mus muscu... [more]
ANR28_HUMAN2.670e-1238.67Serine/threonine-protein phosphatase 6 regulatory ... [more]
ANR52_DANRE2.671e-1240.85Serine/threonine-protein phosphatase 6 regulatory ... [more]
ANR28_MOUSE3.470e-1238.67Serine/threonine-protein phosphatase 6 regulatory ... [more]
ASB3_HUMAN5.959e-1233.71Ankyrin repeat and SOCS box protein 3 OS=Homo sapi... [more]
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Properties
Property NameValue
Genbank descriptionC34104B02EF PostHarvP1 Citrus clementina cDNA clone C34104B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931343 ID=FC931343; Name=FC931343; organism=Citrus clementina; type=EST; length=726bp
GGCAGACAGAGAGAGTTGTCACCAGCACCACCTCTGGTTTATGGTGGCGC
TTCACCAAGAACCTATGGTGAAGTGCGCACCCCTCTGAATCAAAAAAAAA
AAAAAAAGAGAAAGAGAGAGACAGAGTTAAAGAGAGAGGGAGAGAGAGAG
TGATGGGTCAGGGACTGAGTTGTGGAGCGAGTTATGAGCATGCTTTGTTC
ACCGCTGTGCAGCATGGTGATATCGAGTTTGTTAATGATTTGTTAGAGAA
AGATTCAAGTCTCTTACATCAAACCACTGTTTATGATCGCCACTCTGCTC
TTCATATTTCTGCTGCCAATGGCCAGATCGAGATTTTGGAGATTTTGCTG
AACCGATCTGTGAATCCTGATGCGGTGAATCGTTACAAGCAGACTCCGCT
TATGCTGGCTGCAATGCATGGGAAGATCTATTGTGTTAAAAGGCTGCTTG
AAGCTGGAGCTAATATACTGATGTTTGATTCTCTCAATGGAAGAACTTGC
ATTATGCTGCTTACTACGGCCACGCCGATTGCGTTCAAGCCATTCTCTCT
GCTGCTCAGTCTAGTCCTATTGCCGTTTCTTGGGGATATGCGAGGTTTGT
GAACATTAGAGATGGAAGGGGAGCGACGCCATTACACTTGGCTGCGCGTC
AAAGACGGCCCGAATGTGTACATATTTTGCTAGATAGTGGTGCTCTTNGT
TGTGCTTCACCGGTGGATATGGTTGC
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