FC931349

Overview
NameFC931349
Unique NameFC931349
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig514 contig Ccv1_Contig514:499..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 3.179e-83
Identity = 155/167 (92.81%), Postives = 162/167 (97.01%), Query Frame = 2
Query:    2 EKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            EKNEAVRGQDFEKAGELRDREMDLKAQI+AL+DK KE+SKAE+EA D GP+VTE DIQHIVS+WTGIPVEKVSTDESDRLLKMEETLH R+IGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL
Sbjct:  518 EKNEAVRGQDFEKAGELRDREMDLKAQITALIDKNKEVSKAESEAADTGPLVTEADIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHTRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 684          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 3.515e-82
Identity = 156/168 (92.86%), Postives = 161/168 (95.83%), Query Frame = 2
Query:    2 EKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDV-GPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            EKNEAVRGQDFEKAGELRDREMDLKAQISAL+DK KE SKAE+EAGD  GP+VTE DIQHIVS+WTGIPVEKVSTDESDRLLKMEETLH RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAK+LA YYFGSEEAMIRLDMSEFMERHTVSKL
Sbjct:  520 EKNEAVRGQDFEKAGELRDREMDLKAQISALIDKNKEKSKAESEAGDAAGPIVTEADIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHTRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKSLATYYFGSEEAMIRLDMSEFMERHTVSKL 687          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 2.976e-81
Identity = 151/167 (90.42%), Postives = 160/167 (95.81%), Query Frame = 2
Query:    2 EKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            EK E VR QDFEKAGELRD+EMDLKAQISAL++KGKEMSKAETE  D GP+VTEVDIQHIVS+WTGIPV+KVS DESDRLLKME+TLHKR+IGQDEAV+AISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL
Sbjct:  518 EKEEYVRNQDFEKAGELRDKEMDLKAQISALIEKGKEMSKAETETADEGPIVTEVDIQHIVSSWTGIPVDKVSADESDRLLKMEDTLHKRIIGQDEAVQAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 684          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 5.807e-77
Identity = 146/167 (87.43%), Postives = 157/167 (94.01%), Query Frame = 2
Query:    2 EKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            ++NEAVRGQDFEKAG LRDRE++L+A++SA+  KGKEMSKAE+E GD GP+VTE DIQHIVS+WTGI VEKVSTDESD LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIF GPTGVGKSELAKALAAYYFG EEAMIRLDMSEFMERHTVSKL
Sbjct:  466 KENEAVRGQDFEKAGTLRDREIELRAEVSAIQAKGKEMSKAESETGDEGPMVTESDIQHIVSSWTGILVEKVSTDESDLLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFFGPTGVGKSELAKALAAYYFGCEEAMIRLDMSEFMERHTVSKL 632          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 9.952e-61
Identity = 120/169 (71.01%), Postives = 142/169 (84.02%), Query Frame = 2
Query:    2 EKNEAVRGQDFEKAGELRDREMDLKAQISALVD--KGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            +K+EAVR QDFE AG+LRDREM++KAQI+A+    KG E +  E        VVTE DI  IV+AWTGIPV K++  ES++LL+MEETLH R+IGQDEAV A+S+AIRRARVGLKNPNRPIASFIFSGPTGVGK+EL KALA+Y+FGSEEAM+RLDMSE+MERHTVSKL
Sbjct:  425 QKDEAVRSQDFETAGQLRDREMEIKAQIAAIAHSKKGDEENTKEVS------VVTEEDIAQIVAAWTGIPVNKMTRSESEKLLQMEETLHGRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALASYFFGSEEAMVRLDMSEYMERHTVSKL 587          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 8.718e-57
Identity = 108/166 (65.06%), Postives = 137/166 (82.53%), Query Frame = 2
Query:    5 KNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            KNE +R  DFE+A + R+RE+++K Q++AL+   KE  + E       P+V E DI +IVS+WTGIPV K++  ES++LL MEETLH R++GQ+EAV A+S+AIRRARVGLKNPNRPIASFIFSGPTGVGK+EL KA+A+Y+FGSEEAM+RLDMSE+MERHTVSKL
Sbjct:  457 KNELIRSGDFEEASQFREREIEVKVQMAALMKAKKEAIEEELALNP--PIVNEDDIANIVSSWTGIPVSKLTKSESEKLLHMEETLHSRIVGQNEAVIAVSKAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKAMASYFFGSEEAMVRLDMSEYMERHTVSKL 620          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 1.487e-56
Identity = 112/166 (67.47%), Postives = 136/166 (81.93%), Query Frame = 2
Query:    5 KNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            K+EA+R Q +E A + R REM++KAQI+A+     +  K E +     PVVTE DI  IV+AWTGIPV K++  ES++L++MEETLH R+IGQDEAV A+SRAIRRARVGLKNPNRPIASFIFSGPTGVGK+EL KALA+Y+FGSE +MIRLDMSE+MERHTVSKL
Sbjct:  429 KDEAIRAQKYETAEQYRAREMEIKAQIAAIA----QSKKNEPDLNLEDPVVTEDDIAEIVAAWTGIPVTKLTKSESEKLMQMEETLHGRIIGQDEAVIAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALASYFFGSEASMIRLDMSEYMERHTVSKL 590          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.942e-56
Identity = 112/166 (67.47%), Postives = 135/166 (81.33%), Query Frame = 2
Query:    5 KNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            K+EA+R Q +E A + R REM++KAQI+A+     +  K E +     PVVTE DI  IV+AWTGIPV K++  ES++L+ MEETLH R+IGQDEAV A+SRAIRRARVGLKNPNRPIASFIFSGPTGVGK+EL KALA+Y+FGSE +MIRLDMSE+MERHTVSKL
Sbjct:  429 KDEAIRAQKYETAEQYRAREMEIKAQIAAIA----QSKKNEPDLNLEDPVVTEDDIAEIVAAWTGIPVTKLTKSESEKLMHMEETLHGRIIGQDEAVVAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALASYFFGSEASMIRLDMSEYMERHTVSKL 590          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPC_BACSU (Negative regulator of genetic competence clpC/mecB OS=Bacillus subtilis GN=clpC PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.181e-45
Identity = 93/167 (55.69%), Postives = 119/167 (71.26%), Query Frame = 2
Query:    2 EKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            EK+ AV+ Q+FEKA  LRD E  L+ Q+       KE      + G     VT  DI  +VS+WTG+PV K++  E+D+LL ME  LH RVIGQDEAV A+++A+RRAR GLK+P RPI SFIF GPTGVGK+ELA+ALA   FG EE+MIR+DMSE+ME+H+ S+L
Sbjct:  426 EKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKE------KQGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSRL 586          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPB_OCEIH (Chaperone protein clpB OS=Oceanobacillus iheyensis GN=clpB PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.181e-45
Identity = 93/167 (55.69%), Postives = 118/167 (70.66%), Query Frame = 2
Query:    2 EKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            EK+ AV+ Q+FEKA  LRD E   + ++    ++ KE      + G     VT  DI  +VS WTG+PV K++ DE+DRLL ME+ LH RVIGQ EAV A+++AIRRAR GLK+P RPI SFIF GPTGVGK+ELA+ALA   F  E+AMIR+DMSE+MERH  S+L
Sbjct:  429 EKDAAVQSQEFEKAASLRDSEQRFREELETTKNQWKE------KQGQTDSEVTMEDIAAVVSTWTGVPVSKLTKDETDRLLNMEKILHDRVIGQSEAVNAVAKAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAEVMFADEDAMIRIDMSEYMERHATSRL 589          
The following BLAST results are available for this feature:
BLAST of FC931349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPAB_SOLLC3.179e-8392.81ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAA_SOLLC3.515e-8292.86ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PEA2.976e-8190.42ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_BRANA5.807e-7787.43ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_GUITH9.952e-6171.01ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_CYACA8.718e-5765.06ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORPU1.487e-5667.47ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORYE1.942e-5667.47ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_BACSU1.181e-4555.69Negative regulator of genetic competence clpC/mecB... [more]
CLPB_OCEIH1.181e-4555.69Chaperone protein clpB OS=Oceanobacillus iheyensis... [more]

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Properties
Property NameValue
Genbank descriptionC34104B08EF PostHarvP1 Citrus clementina cDNA clone C34104B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931349 ID=FC931349; Name=FC931349; organism=Citrus clementina; type=EST; length=502bp
GGAGAAGAATGAGGCTGTTCGTGGCCAAGACTTTGAAAAGGCTGGAGAGT
TACGTGATAGAGAAATGGACCTTAAGGCTCAGATATCTGCTCTTGTCGAT
AAAGGCAAAGAGATGAGCAAGGCAGAGACTGAAGCAGGGGATGTTGGTCC
TGTTGTGACTGAAGTGGACATTCAACACATTGTCTCAGCTTGGACGGGCA
TTCCGGTTGAAAAAGTCTCGACTGATGAATCTGATCGCCTCCTCAAGATG
GAAGAGACCCTTCACAAGAGAGTTATTGGTCAGGACGAAGCTGTCAAAGC
TATTAGTCGTGCTATCCGGCGTGCACGTGTTGGACTCAAAAACCCCAATC
GACCAATTGCTAGTTTCATCTTTTCTGGTCCAACTGGTGTCGGGAAGTCT
GAACTGGCCAAAGCACTGGCTGCCTATTACTTTGGCTCAGAGGAGGCCAT
GATCAGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTTTCCAAGC
TC
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