FC931353
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: RH7_SPIOL (DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea GN=RH7 PE=2 SV=1) HSP 1 Score: 327.405 bits (838), Expect = 4.660e-89 Identity = 166/224 (74.11%), Postives = 188/224 (83.93%), Query Frame = 1 Query: 1 RTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPREK 672 R+IIFTETKESASQLA LL GAR LHGDIQQ+QREVTL GFR+GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVE YIHRSGRTGRAGNTGVAVMLYDP++SSV+KIERESGVKFEH+SAPQP D+AKA G+EAA I Q+SDSVIPAFK AAEELL+ SG GY++IK RSLL+ +E +VT++L+AG+P Y SFA+ VL+RFLP K Sbjct: 363 RSIIFTETKESASQLAGLLTGARPLHGDIQQTQREVTLKGFRTGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGRTGRAGNTGVAVMLYDPKRSSVTKIERESGVKFEHLSAPQPVDVAKAVGIEAAAAILQISDSVIPAFKDAAEELLSTSGLSAVDILSKALAKAAGYSDIKERSLLTGMEGYVTLLLDAGRPFYGQSFAYTVLKRFLPATK 586
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: RH7_ORYSJ (DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp. japonica GN=Os09g0520700 PE=2 SV=1) HSP 1 Score: 308.916 bits (790), Expect = 1.715e-83 Identity = 154/225 (68.44%), Postives = 184/225 (81.78%), Query Frame = 1 Query: 1 RTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPREK 672 RTIIFTETKESAS L+ L+ G+RALHGD+ Q+QREV LAGFRSGKF+ LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML++PR K +V++IERESGVKFEHISAPQP D+A++AG EAAE I+ VSDSVIP F+ AE+LLN+SG VGYT+IK RSLLSS+++H T++L+ G+ +Y F L+RF+P E+ Sbjct: 371 RTIIFTETKESASDLSGLIAGSRALHGDVAQAQREVILAGFRSGKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFEPRYKFNVNRIERESGVKFEHISAPQPTDVAQSAGTEAAEAISSVSDSVIPVFREQAEQLLNSSGMSAVDLLAKALAKAVGYTDIKKRSLLSSMDNHTTLLLQTGRSVYAAGFVLSTLKRFMPEER 595
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: RH7_ARATH (DEAD-box ATP-dependent RNA helicase 7 OS=Arabidopsis thaliana GN=RH7 PE=1 SV=2) HSP 1 Score: 308.531 bits (789), Expect = 2.240e-83 Identity = 155/224 (69.20%), Postives = 185/224 (82.59%), Query Frame = 1 Query: 1 RTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPREK 672 +TIIF ETK S+L+ LL G+RALHG+I QSQREVTLAGFR+GKF TLVATNVAARGLDINDVQLIIQCEPPR+VEAYIHRSGRTGRAGNTGVAV LYD RKSSVS+IE+E+G+KFEH++APQP +IA++ G+EAAE + QV DSV+PAF AA+ELL SG G+TEIK RSLL+S+E++VT+ LEAGKPIY+PSF +G+LRR LP +K Sbjct: 352 QTIIFAETKVQVSELSGLLDGSRALHGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTLYDSRKSSVSRIEKEAGIKFEHLAAPQPDEIARSGGMEAAEKVKQVCDSVVPAFLEAAKELLETSGLSAEVLLAKALAKTAGFTEIKKRSLLTSMENYVTLHLEAGKPIYSPSFVYGLLRRVLPDDK 575
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DDX21_HUMAN (Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 PE=1 SV=5) HSP 1 Score: 173.326 bits (438), Expect = 1.125e-42 Identity = 97/227 (42.73%), Postives = 138/227 (60.79%), Query Frame = 1 Query: 1 RTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPRE 669 RTIIF ETK+ A +L+ + A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG TGV + Y ++ + ++E+++G+KF+ I P +I KA+ +A + V + I FK +AE+L+ G G T + RSL++S VT++L+ + S+A+ L+ L E Sbjct: 440 RTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHIS--GATSVDQRSLINSNVGFVTMILQCSIEMPNISYAWKELKEQLGEE 664
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DDX50_MOUSE (ATP-dependent RNA helicase DDX50 OS=Mus musculus GN=Ddx50 PE=2 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 2.505e-42 Identity = 94/224 (41.96%), Postives = 137/224 (61.16%), Query Frame = 1 Query: 1 RTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFL 660 R IIF ETK++ +++A + A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG TG+ V Y PR + + +E+++G+ F+ + P D+ K+ ++A ++ VS + + F+ +A+ L+ G G + + RSL++S + VT+ LE+ + I S A+ L R L Sbjct: 388 RAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHIS--GASSFEPRSLITSDKGFVTMTLESPEEIQDVSCAWKELNRKL 609
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DDX21_RAT (Nucleolar RNA helicase 2 OS=Rattus norvegicus GN=Ddx21 PE=2 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 4.274e-42 Identity = 95/224 (42.41%), Postives = 137/224 (61.16%), Query Frame = 1 Query: 1 RTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFL 660 RTIIF ETK+ A +L+ + A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG TGV + Y ++ ++++E+++G+KF+ I P +I KA+ +A + V + I FK +AE+L+ G G T + RSL++S VT++L + S+A+ L+ L Sbjct: 436 RTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAIGHFKQSAEKLIEEKGAVEALAAALAHIS--GATSVDQRSLINSQAGFVTMILRCSVEMPNISYAWKELKEQL 657
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DDX21_MOUSE (Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 PE=1 SV=2) HSP 1 Score: 171.4 bits (433), Expect = 4.274e-42 Identity = 95/224 (42.41%), Postives = 137/224 (61.16%), Query Frame = 1 Query: 1 RTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFL 660 RTIIF ETK+ A +L+ + A++LHGDI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG TGV + Y ++ ++++E+++G+KF+ I P +I KA+ +A + V + I FK +AE+L+ G G T + RSL++S VT++L + S+A+ L+ L Sbjct: 512 RTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHIS--GATSVDQRSLINSQAGFVTMILRCSIEMPNISYAWKELKEQL 733
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DDX50_HUMAN (ATP-dependent RNA helicase DDX50 OS=Homo sapiens GN=DDX50 PE=1 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 5.582e-42 Identity = 93/224 (41.52%), Postives = 137/224 (61.16%), Query Frame = 1 Query: 1 RTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFL 660 R IIF ETK++ +++A + A+ LHGDI QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG TG+ + Y PR + + +E+++G+ F+ + P D+ K+ ++A ++ VS + + F+ +A+ L+ G G + + RSL++S + VT+ LE+ + I S A+ L R L Sbjct: 391 RAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHIS--GASSFEPRSLITSDKGFVTMTLESLEEIQDVSCAWKELNRKL 612
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: RH3_ORYSJ (DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2) HSP 1 Score: 139.428 bits (350), Expect = 1.800e-32 Identity = 89/225 (39.56%), Postives = 126/225 (56.00%), Query Frame = 1 Query: 1 RTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGXXXXXXXXXXXXXXVGYTE-IKSRSLLSSLEDHVTVVLEA----GKPIYTPSFAFGVL 648 +TI+FT+TK A +++ L + ALHGDI Q QRE TL GFR GKF LVAT+VAARGLDI +V LII E P D E ++HRSGRTGRAG G A++++ + ++ +V +ER+ G +F+ IS P D+ +++ T+ V I F AAE L G G+++ SRSL+S + VT+ L G+ ++P G L Sbjct: 353 KTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTESIQYFIPAAERLQEELGPNALASALAHLS---GFSQPPSSRSLISHEQGWVTLQLTRDPGYGRGFFSPRSVTGFL 574
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: RH3_ARATH (DEAD-box ATP-dependent RNA helicase 3 OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2) HSP 1 Score: 136.346 bits (342), Expect = 1.524e-31 Identity = 83/205 (40.49%), Postives = 118/205 (57.56%), Query Frame = 1 Query: 1 RTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGXXXXXXXXXXXXXXVGYTE-IKSRSLLSSLEDHVTVVL 600 +TI+FT+TK A +++ L + ALHGDI Q QRE TL FR GKF LVAT+VA+RGLDI +V L+I E P D E ++HRSGRTGRAG G A++++ +K +V +ER+ G FE IS P D+ +++ + T+ V I F + A++L G G+++ SRSLLS + VT+ L Sbjct: 353 KTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDSIKFFSATAQKLYEEKGTDALAAALAHLS---GFSQPPSSRSLLSHEKGWVTLQL 554 The following BLAST results are available for this feature:
BLAST of FC931353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931353 ID=FC931353; Name=FC931353; organism=Citrus clementina; type=EST; length=716bpback to top |