FC931353

Overview
NameFC931353
Unique NameFC931353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: RH7_SPIOL (DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea GN=RH7 PE=2 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 4.660e-89
Identity = 166/224 (74.11%), Postives = 188/224 (83.93%), Query Frame = 1
Query:    1 RTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPREK 672
            R+IIFTETKESASQLA LL GAR LHGDIQQ+QREVTL GFR+GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVE YIHRSGRTGRAGNTGVAVMLYDP++SSV+KIERESGVKFEH+SAPQP D+AKA G+EAA  I Q+SDSVIPAFK AAEELL+ SG               GY++IK RSLL+ +E +VT++L+AG+P Y  SFA+ VL+RFLP  K
Sbjct:  363 RSIIFTETKESASQLAGLLTGARPLHGDIQQTQREVTLKGFRTGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGRTGRAGNTGVAVMLYDPKRSSVTKIERESGVKFEHLSAPQPVDVAKAVGIEAAAAILQISDSVIPAFKDAAEELLSTSGLSAVDILSKALAKAAGYSDIKERSLLTGMEGYVTLLLDAGRPFYGQSFAYTVLKRFLPATK 586          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: RH7_ORYSJ (DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp. japonica GN=Os09g0520700 PE=2 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 1.715e-83
Identity = 154/225 (68.44%), Postives = 184/225 (81.78%), Query Frame = 1
Query:    1 RTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPREK 672
            RTIIFTETKESAS L+ L+ G+RALHGD+ Q+QREV LAGFRSGKF+ LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML++PR K +V++IERESGVKFEHISAPQP D+A++AG EAAE I+ VSDSVIP F+  AE+LLN+SG              VGYT+IK RSLLSS+++H T++L+ G+ +Y   F    L+RF+P E+
Sbjct:  371 RTIIFTETKESASDLSGLIAGSRALHGDVAQAQREVILAGFRSGKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFEPRYKFNVNRIERESGVKFEHISAPQPTDVAQSAGTEAAEAISSVSDSVIPVFREQAEQLLNSSGMSAVDLLAKALAKAVGYTDIKKRSLLSSMDNHTTLLLQTGRSVYAAGFVLSTLKRFMPEER 595          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: RH7_ARATH (DEAD-box ATP-dependent RNA helicase 7 OS=Arabidopsis thaliana GN=RH7 PE=1 SV=2)

HSP 1 Score: 308.531 bits (789), Expect = 2.240e-83
Identity = 155/224 (69.20%), Postives = 185/224 (82.59%), Query Frame = 1
Query:    1 RTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPREK 672
            +TIIF ETK   S+L+ LL G+RALHG+I QSQREVTLAGFR+GKF TLVATNVAARGLDINDVQLIIQCEPPR+VEAYIHRSGRTGRAGNTGVAV LYD RKSSVS+IE+E+G+KFEH++APQP +IA++ G+EAAE + QV DSV+PAF  AA+ELL  SG               G+TEIK RSLL+S+E++VT+ LEAGKPIY+PSF +G+LRR LP +K
Sbjct:  352 QTIIFAETKVQVSELSGLLDGSRALHGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTLYDSRKSSVSRIEKEAGIKFEHLAAPQPDEIARSGGMEAAEKVKQVCDSVVPAFLEAAKELLETSGLSAEVLLAKALAKTAGFTEIKKRSLLTSMENYVTLHLEAGKPIYSPSFVYGLLRRVLPDDK 575          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DDX21_HUMAN (Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 PE=1 SV=5)

HSP 1 Score: 173.326 bits (438), Expect = 1.125e-42
Identity = 97/227 (42.73%), Postives = 138/227 (60.79%), Query Frame = 1
Query:    1 RTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPRE 669
            RTIIF ETK+ A +L+    +   A++LHGDI Q QRE+TL GFR+G F  LVATNVAARGLDI +V L+IQ  PP+DVE+YIHRSGRTGRAG TGV +  Y  ++   + ++E+++G+KF+ I  P   +I KA+  +A   +  V  + I  FK +AE+L+   G               G T +  RSL++S    VT++L+    +   S+A+  L+  L  E
Sbjct:  440 RTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHIS--GATSVDQRSLINSNVGFVTMILQCSIEMPNISYAWKELKEQLGEE 664          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DDX50_MOUSE (ATP-dependent RNA helicase DDX50 OS=Mus musculus GN=Ddx50 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.505e-42
Identity = 94/224 (41.96%), Postives = 137/224 (61.16%), Query Frame = 1
Query:    1 RTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFL 660
            R IIF ETK++ +++A    +   A+ LHGDI QSQRE+TL GFR G F  LVATNVAARGLDI +V L+IQ  PP+DVE+YIHRSGRTGRAG TG+ V  Y PR +  +  +E+++G+ F+ +  P   D+ K+  ++A  ++  VS + +  F+ +A+ L+   G               G +  + RSL++S +  VT+ LE+ + I   S A+  L R L
Sbjct:  388 RAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHIS--GASSFEPRSLITSDKGFVTMTLESPEEIQDVSCAWKELNRKL 609          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DDX21_RAT (Nucleolar RNA helicase 2 OS=Rattus norvegicus GN=Ddx21 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.274e-42
Identity = 95/224 (42.41%), Postives = 137/224 (61.16%), Query Frame = 1
Query:    1 RTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFL 660
            RTIIF ETK+ A +L+    +   A++LHGDI Q QRE+TL GFR+G F  LVATNVAARGLDI +V L++Q  PP+DVE+YIHRSGRTGRAG TGV +  Y  ++   ++++E+++G+KF+ I  P   +I KA+  +A   +  V  + I  FK +AE+L+   G               G T +  RSL++S    VT++L     +   S+A+  L+  L
Sbjct:  436 RTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAIGHFKQSAEKLIEEKGAVEALAAALAHIS--GATSVDQRSLINSQAGFVTMILRCSVEMPNISYAWKELKEQL 657          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DDX21_MOUSE (Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 4.274e-42
Identity = 95/224 (42.41%), Postives = 137/224 (61.16%), Query Frame = 1
Query:    1 RTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFL 660
            RTIIF ETK+ A +L+    +   A++LHGDI Q QRE+TL GFR+G F  LVATNVAARGLDI +V L++Q  PP+DVE+YIHRSGRTGRAG TGV +  Y  ++   ++++E+++G+KF+ I  P   +I KA+  +A   +  V  + I  FK +AE+L+   G               G T +  RSL++S    VT++L     +   S+A+  L+  L
Sbjct:  512 RTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHIS--GATSVDQRSLINSQAGFVTMILRCSIEMPNISYAWKELKEQL 733          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DDX50_HUMAN (ATP-dependent RNA helicase DDX50 OS=Homo sapiens GN=DDX50 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.582e-42
Identity = 93/224 (41.52%), Postives = 137/224 (61.16%), Query Frame = 1
Query:    1 RTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFL 660
            R IIF ETK++ +++A    +   A+ LHGDI QSQRE+TL GFR G F  LVATNVAARGLDI +V L+IQ  PP+DVE+YIHRSGRTGRAG TG+ +  Y PR +  +  +E+++G+ F+ +  P   D+ K+  ++A  ++  VS + +  F+ +A+ L+   G               G +  + RSL++S +  VT+ LE+ + I   S A+  L R L
Sbjct:  391 RAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHIS--GASSFEPRSLITSDKGFVTMTLESLEEIQDVSCAWKELNRKL 612          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: RH3_ORYSJ (DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.800e-32
Identity = 89/225 (39.56%), Postives = 126/225 (56.00%), Query Frame = 1
Query:    1 RTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGXXXXXXXXXXXXXXVGYTE-IKSRSLLSSLEDHVTVVLEA----GKPIYTPSFAFGVL 648
            +TI+FT+TK  A +++  L  +    ALHGDI Q QRE TL GFR GKF  LVAT+VAARGLDI +V LII  E P D E ++HRSGRTGRAG  G A++++ + ++ +V  +ER+ G +F+ IS P   D+ +++      T+  V    I  F  AAE L    G               G+++   SRSL+S  +  VT+ L      G+  ++P    G L
Sbjct:  353 KTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTESIQYFIPAAERLQEELGPNALASALAHLS---GFSQPPSSRSLISHEQGWVTLQLTRDPGYGRGFFSPRSVTGFL 574          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: RH3_ARATH (DEAD-box ATP-dependent RNA helicase 3 OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.524e-31
Identity = 83/205 (40.49%), Postives = 118/205 (57.56%), Query Frame = 1
Query:    1 RTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGXXXXXXXXXXXXXXVGYTE-IKSRSLLSSLEDHVTVVL 600
            +TI+FT+TK  A +++  L  +    ALHGDI Q QRE TL  FR GKF  LVAT+VA+RGLDI +V L+I  E P D E ++HRSGRTGRAG  G A++++   +K +V  +ER+ G  FE IS P   D+ +++  +   T+  V    I  F + A++L    G               G+++   SRSLLS  +  VT+ L
Sbjct:  353 KTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDSIKFFSATAQKLYEEKGTDALAAALAHLS---GFSQPPSSRSLLSHEKGWVTLQL 554          
The following BLAST results are available for this feature:
BLAST of FC931353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH7_SPIOL4.660e-8974.11DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia ... [more]
RH7_ORYSJ1.715e-8368.44DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sat... [more]
RH7_ARATH2.240e-8369.20DEAD-box ATP-dependent RNA helicase 7 OS=Arabidops... [more]
DDX21_HUMAN1.125e-4242.73Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 ... [more]
DDX50_MOUSE2.505e-4241.96ATP-dependent RNA helicase DDX50 OS=Mus musculus G... [more]
DDX21_RAT4.274e-4242.41Nucleolar RNA helicase 2 OS=Rattus norvegicus GN=D... [more]
DDX21_MOUSE4.274e-4242.41Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 ... [more]
DDX50_HUMAN5.582e-4241.52ATP-dependent RNA helicase DDX50 OS=Homo sapiens G... [more]
RH3_ORYSJ1.800e-3239.56DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sat... [more]
RH3_ARATH1.524e-3140.49DEAD-box ATP-dependent RNA helicase 3 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC34104B12EF PostHarvP1 Citrus clementina cDNA clone C34104B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931353 ID=FC931353; Name=FC931353; organism=Citrus clementina; type=EST; length=716bp
CGAACTATTATTTTCACCGAGACAAAGGAAAGTGCTTCTCAGCTTGCTGA
CTTGCTGCCTGGTGCACGGGCTTTACATGGGGACATACAGCAGTCTCAAC
GTGAGGTGACACTTGCTGGGTTCAGGTCAGGAAAGTTCATGACATTAGTT
GCCACAAATGTGGCGGCACGGGGTTTGGACATTAATGATGTGCAGTTAAT
TATTCAGTGTGAGCCTCCTCGTGATGTAGAAGCCTATATACATCGATCTG
GACGTACTGGAAGAGCAGGCAATACTGGAGTTGCTGTAATGCTTTATGAT
CCTAGAAAGTCAAGTGTATCTAAGATAGAAAGAGAATCTGGTGTGAAATT
TGAGCACATATCTGCTCCACAGCCAGCTGATATTGCCAAGGCTGCAGGTG
TGGAAGCTGCTGAAACAATAACCCAAGTTTCTGATAGTGTAATTCCCGCT
TTCAAGTCCGCTGCTGAGGAGCTGTTGAATAATTCTGGTCTATCAGCAGC
AGAGCTGCTTGCAAAAGCACTAGCCAAGGCTGTAGGTTATACTGAGATAA
AGAGTAGATCACTTCTTAGTTCTTTGGAGGATCATGTTACAGTGGTTCTT
GAAGCAGGAAAGCCCATCTACACACCATCCTTTGCTTTTGGTGTCTTGAG
AAGATTCTTGCCTCGAGAAAAGTACAGTTAGTGAAGGGTATGGCTCTGAC
CGCTGATGGAATGGTG
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