FC931359
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4_YARLI (40S ribosomal protein S4 OS=Yarrowia lipolytica GN=RPS4 PE=2 SV=1) HSP 1 Score: 224.557 bits (571), Expect = 2.438e-87 Identity = 106/134 (79.10%), Postives = 119/134 (88.81%), Query Frame = 3 Query: 276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGG 677 +VDGKVRTD+T+PAGFMDVI LEKTGE+FRLVYD KGRF VHRI EEA YKL KVKRVQ+GK GIP+LVTHD RTIRYPDP IKVNDTVK+D+ATGKI FVKF++G ++M TGGRNMGRVG ITHRERH+GG Sbjct: 71 KVDGKVRTDSTFPAGFMDVIQLEKTGENFRLVYDVKGRFAVHRITDEEAAYKLGKVKRVQVGKKGIPYLVTHDGRTIRYPDPLIKVNDTVKIDLATGKITSFVKFENGNIVMTTGGRNMGRVGTITHRERHEGG 204 HSP 2 Score: 119.398 bits (298), Expect = 2.438e-87 Identity = 53/68 (77.94%), Postives = 63/68 (92.65%), Query Frame = 2 Query: 71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274 RGP KH KRL+APSHW+LDK+SGTYAP++S GPHKLR+ LPL++F+RNRLKYALNGREV AI+MQRLV Sbjct: 3 RGPKKHLKRLAAPSHWMLDKLSGTYAPRSSAGPHKLRESLPLVIFLRNRLKYALNGREVNAILMQRLV 70
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4B_SCHPO (40S ribosomal protein S4-B OS=Schizosaccharomyces pombe GN=rps4b PE=1 SV=1) HSP 1 Score: 218.009 bits (554), Expect = 4.148e-87 Identity = 102/133 (76.69%), Postives = 114/133 (85.71%), Query Frame = 3 Query: 276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674 QVDGKVRTD+T+P GFMDVIS+EKTGEHFRLVYD KGRFTVHRI AEEA+YKLCKVKRVQLG G+PFLVTHD RTIRYPDP IKVNDT+K+++ T KI F+KFD+ +M TGGRNMGRVG I HRE H G Sbjct: 71 QVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLG 203 HSP 2 Score: 125.176 bits (313), Expect = 4.148e-87 Identity = 56/69 (81.16%), Postives = 64/69 (92.75%), Query Frame = 2 Query: 68 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274 +RGP KH KR++AP HWLLDK+SGTYAPK SPGPHK R+CLPLIVF+RNRLKYALNGREVKAI+MQRL+ Sbjct: 2 VRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLI 70
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4A_SCHPO (40S ribosomal protein S4-A OS=Schizosaccharomyces pombe GN=rps4a PE=2 SV=2) HSP 1 Score: 216.468 bits (550), Expect = 1.201e-86 Identity = 101/133 (75.94%), Postives = 114/133 (85.71%), Query Frame = 3 Query: 276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674 +VDGKVRTD+T+P GFMDVIS+EKTGEHFRLVYD KGRFTVHRI AEEA+YKLCKVKRVQLG G+PFLVTHD RTIRYPDP IKVNDT+K+++ T KI F+KFD+ +M TGGRNMGRVG I HRE H G Sbjct: 71 KVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLG 203 HSP 2 Score: 125.176 bits (313), Expect = 1.201e-86 Identity = 56/69 (81.16%), Postives = 64/69 (92.75%), Query Frame = 2 Query: 68 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274 +RGP KH KR++AP HWLLDK+SGTYAPK SPGPHK R+CLPLIVF+RNRLKYALNGREVKAI+MQRL+ Sbjct: 2 VRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLI 70
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4C_SCHPO (40S ribosomal protein S4-C OS=Schizosaccharomyces pombe GN=rps4c PE=1 SV=1) HSP 1 Score: 215.312 bits (547), Expect = 2.666e-86 Identity = 100/133 (75.19%), Postives = 114/133 (85.71%), Query Frame = 3 Query: 276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674 +VDGKVRTD+T+P GFMDVIS++KTGEHFRLVYD KGRFTVHRI AEEA+YKLCKVKRVQLG G+PFLVTHD RTIRYPDP IKVNDT+K+++ T KI F+KFD+ +M TGGRNMGRVG I HRE H G Sbjct: 71 KVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLG 203 HSP 2 Score: 125.176 bits (313), Expect = 2.666e-86 Identity = 56/69 (81.16%), Postives = 64/69 (92.75%), Query Frame = 2 Query: 68 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274 +RGP KH KR++AP HWLLDK+SGTYAPK SPGPHK R+CLPLIVF+RNRLKYALNGREVKAI+MQRL+ Sbjct: 2 VRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLI 70
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4_YEAST (40S ribosomal protein S4 OS=Saccharomyces cerevisiae GN=RPS4A PE=1 SV=3) HSP 1 Score: 216.853 bits (551), Expect = 9.228e-84 Identity = 99/134 (73.88%), Postives = 117/134 (87.31%), Query Frame = 3 Query: 276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGG 677 +VDGKVRTDTTYPAGFMDVI+L+ T E+FRLVYD KGRF VHRI EEA YKL KVK+VQLGK G+P++VTHD RTIRYPDP IKVNDTVK+D+A+GKI DF+KFD+G ++ TGGRN+GR+G I H+ERHDGG Sbjct: 71 KVDGKVRTDTTYPAGFMDVITLDATNENFRLVYDVKGRFAVHRITDEEASYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPNIKVNDTVKIDLASGKITDFIKFDAGKLVYVTGGRNLGRIGTIVHKERHDGG 204 HSP 2 Score: 115.161 bits (287), Expect = 9.228e-84 Identity = 54/68 (79.41%), Postives = 60/68 (88.24%), Query Frame = 2 Query: 71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274 RGP KH KRL+AP HWLLDK+SG YAP+ S GPHKLR+ LPLIVF+RNRLKYALNGREVKAI+MQR V Sbjct: 3 RGPKKHLKRLAAPHHWLLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAILMQRHV 70
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4_CHICK (40S ribosomal protein S4 OS=Gallus gallus GN=RPS4 PE=2 SV=2) HSP 1 Score: 218.779 bits (556), Expect = 4.968e-82 Identity = 100/133 (75.19%), Postives = 118/133 (88.72%), Query Frame = 3 Query: 276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674 ++DGKVRTD TYPAGFMDVIS+EKTGEHFRLVYDTKGRF VHRI AEEA+YKLCKV+++ +G GIP LVTHDARTIRYPDP IKVNDT+++D+ TGKI DF+KFD+G + M TGG N+GR+GVIT+RERH G Sbjct: 71 KIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPG 203 HSP 2 Score: 107.457 bits (267), Expect = 4.968e-82 Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 2 Query: 71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274 RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR + Sbjct: 3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI 70
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4_XENTR (40S ribosomal protein S4 OS=Xenopus tropicalis GN=rps4 PE=2 SV=3) HSP 1 Score: 218.009 bits (554), Expect = 8.452e-82 Identity = 100/133 (75.19%), Postives = 117/133 (87.97%), Query Frame = 3 Query: 276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674 ++DGKVRTD TYPAGFMDVIS+EKTGEHFRLVYDTKGRF VHRI AEEA+YKLCKV++ +G GIP LVTHDARTIRYPDP IKVNDT+++D+ TGKI DF+KFD+G + M TGG N+GR+GVIT+RERH G Sbjct: 71 KIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKTWVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPG 203 HSP 2 Score: 107.457 bits (267), Expect = 8.452e-82 Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 2 Query: 71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274 RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR + Sbjct: 3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI 70
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4_XENLA (40S ribosomal protein S4 OS=Xenopus laevis GN=rps4 PE=2 SV=4) HSP 1 Score: 216.853 bits (551), Expect = 1.876e-81 Identity = 99/133 (74.44%), Postives = 117/133 (87.97%), Query Frame = 3 Query: 276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674 ++DGKVRTD TYPAGFMDVIS+EKTGEHFRLVYDTKGRF VHRI +EEA+YKLCKV++ +G GIP LVTHDARTIRYPDP IKVNDT+++D+ TGKI DF+KFD+G + M TGG N+GR+GVIT+RERH G Sbjct: 71 KIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITSEEAKYKLCKVRKTWVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPG 203 HSP 2 Score: 107.457 bits (267), Expect = 1.876e-81 Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 2 Query: 71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274 RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR + Sbjct: 3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI 70
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4Y1_MACFU (40S ribosomal protein S4, Y isoform 1 OS=Macaca fuscata fuscata GN=RPS4Y1 PE=2 SV=3) HSP 1 Score: 214.927 bits (546), Expect = 7.082e-81 Identity = 99/133 (74.44%), Postives = 115/133 (86.47%), Query Frame = 3 Query: 276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674 ++DGKVR D TYPAGFMDVIS+EKTGEHFRLVYDTKGRF VHRI AEEA+YKLCKV+++ +G GIP LVTHDARTIRYPDP IKVNDTV++D+ +GKI F+KFD+G V M GG N+GRVGVIT+RERH G Sbjct: 71 KIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPVIKVNDTVRIDLGSGKITSFIKFDTGNVCMVIGGANLGRVGVITNRERHPG 203 HSP 2 Score: 107.457 bits (267), Expect = 7.082e-81 Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 2 Query: 71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274 RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR + Sbjct: 3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI 70
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANTR (40S ribosomal protein S4, Y isoform 1 OS=Pan troglodytes GN=RPS4Y1 PE=2 SV=2) HSP 1 Score: 214.542 bits (545), Expect = 7.082e-81 Identity = 98/133 (73.68%), Postives = 116/133 (87.22%), Query Frame = 3 Query: 276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674 ++DGKVR D TYPAGFMDVIS+EKTGEHFRLVYDTKGRF VHRI EEA+YKLCKV+++ +G GIP LVTHDARTIRYPDP IKVNDTV++D+ TGKI++F+KFD+G + M GG N+GRVGVIT+RERH G Sbjct: 71 KIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPG 203 HSP 2 Score: 107.842 bits (268), Expect = 7.082e-81 Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 2 Query: 71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLV 274 RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLIVF+RNRLKYAL G EVK I MQR + Sbjct: 3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFI 70 The following BLAST results are available for this feature:
BLAST of FC931359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931359 ID=FC931359; Name=FC931359; organism=Citrus clementina; type=EST; length=679bpback to top |