FC931360

Overview
NameFC931360
Unique NameFC931360
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5681 contig Ccv1_Contig5681:28..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931360 vs. ExPASy Swiss-Prot
Match: U497A_ARATH (UPF0497 membrane protein At2g36330 OS=Arabidopsis thaliana GN=At2g36330 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.937e-29
Identity = 62/86 (72.09%), Postives = 75/86 (87.21%), Query Frame = 3
Query:  471 ILKRSKFEARLMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRY 728
            IL+RS+ E  + F+ LGFRL EVVL+LISFS+MAADKT+GWSGDSFDRY+EYR+CLSVNV+AFVYS FQA DLAY+L K KH+I +
Sbjct:  122 ILRRSRREEVVKFSALGFRLSEVVLALISFSIMAADKTKGWSGDSFDRYKEYRFCLSVNVVAFVYSSFQACDLAYHLVKEKHLISH 207          
BLAST of FC931360 vs. ExPASy Swiss-Prot
Match: U49D7_ARATH (UPF0497 membrane protein At5g62820 OS=Arabidopsis thaliana GN=At5g62820 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.895e-25
Identity = 78/205 (38.05%), Postives = 104/205 (50.73%), Query Frame = 3
Query:  183 HSPLRXXXXXXXXXXXXXXXXXXXQKSPINHDDKPNSKAIVAVADKFTQSSPM---------------LEKPAEV----------KTSVMFNKAVREDGTPSVMKTEXXXXXXXXXXXXXXILKRSKFEARLMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVI 722
            HSPLR                   + SP   +   N K+IVA  +K TQ SP+                ++ A V           + V+ N  VREDG  +   T                + R++ +  +    LGFR+ EV+L +ISFS+MAADKTQGWSGDS+DRY+EYRYCL+VNVIAFVYS F+A D A Y+AK  ++I
Sbjct:   21 HSPLRFHSPLSDAGDLPESRYVSPEGSPFKIE---NPKSIVA-GNKLTQFSPLPSPIPPPPPQFPPPRRQRNARVPMNSSSDKSPSSMVVHNSWVREDGGQTT--TRKAGAPINGEESTRTTVNRARGDDLVSLTALGFRITEVILCVISFSIMAADKTQGWSGDSYDRYKEYRYCLAVNVIAFVYSAFEACDAACYIAKESYMI 219          
BLAST of FC931360 vs. ExPASy Swiss-Prot
Match: U49A7_ARATH (UPF0497 membrane protein At5g40300 OS=Arabidopsis thaliana GN=At5g40300 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.208e-16
Identity = 51/156 (32.69%), Postives = 80/156 (51.28%), Query Frame = 3
Query:  276 DDKPNSKAIVAVADKFTQSS-PMLEKPAEVKTSVMFNKAVREDGTPSVMKTEXXXXXXXXXXXXXXILKRSKFEARLMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLA----KGKHVIRY 728
            +  P+S  + ++ D    S   ++  P+  KT   F      +G      +E                + SK+ + +  A LGFR+I  V  L+SFSVM +D+ +GW+ DSF  Y+E+R+CL+ NVI FVYSGF   DL Y L+    + +H +R+
Sbjct:   46 ESPPDSPTLSSIPDSHGSSPHTIIPTPSVAKTETPFRVT---NGEEEKKVSESRRQLRPSFSSSSSTPRESKWASLIRKALLGFRVIAFVSCLVSFSVMVSDRDKGWAHDSFYNYKEFRFCLAANVIGFVYSGFMICDLVYLLSTSIRRSRHNLRH 198          
The following BLAST results are available for this feature:
BLAST of FC931360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
U497A_ARATH1.937e-2972.09UPF0497 membrane protein At2g36330 OS=Arabidopsis ... [more]
U49D7_ARATH2.895e-2538.05UPF0497 membrane protein At5g62820 OS=Arabidopsis ... [more]
U49A7_ARATH3.208e-1632.69UPF0497 membrane protein At5g40300 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionC34104C08EF PostHarvP1 Citrus clementina cDNA clone C34104C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931360 ID=FC931360; Name=FC931360; organism=Citrus clementina; type=EST; length=732bp
GAAACAACTTTTTCCCTCTTGATAAATTCCCGAGAAACCCAAACTGAGGC
GGATAAATTATGGAAACCAAATCACAACATCAAAACATACAGCAAAAGAC
AAACACAAAGAGAGCCAACGGCAACAACATGAAACGATCTTCGTCGTCGA
ACTCCGACTCTCCTCACTCACCGCACCGTTTCCACTCGCCACTCCGATCC
GACCCGGGCGACCCCGACCCCCCCGACGCCTTCGCTTCTCCTGACGCCTC
GCCACAGAAGTCACCGATAAATCATGACGACAAACCGAACTCGAAAGCCA
TCGTCGCCGTCGCCGACAAGTTCACGCAGAGCTCTCCGATGCTGGAGAAG
CCGGCGGAGGTAAAGACTTCTGTAATGTTTAACAAGGCAGTGAGAGAAGA
CGGTACGCCTTCTGTGATGAAGACCGAACCCGGCCGAGTAGGAGGAGGGA
GATCGGGGCCGGTGGCGTCGATACTGAAGAGATCGAAGTTTGAGGCGAGG
CTGATGTTTGCGAATTTAGGGTTTAGGTTAATCGAAGTCGTTTTGAGTCT
GATTTCTTTCTCTGTTATGGCCGCTGATAAGACGCAGGGCTGGAGCGGCG
ATTCCTTTGATCGTTACAGAGAATACAGGTACTGTTTATCTGTGAACGTT
ATTGCATTTGTATATTCGGGATTTCAAGCATATGATCTAGCTTACTATCT
GGCCAAGGGGAAACATGTGATCCGATACATCT
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