FC931361

Overview
NameFC931361
Unique NameFC931361
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931361_ssr142 microsatellite FC931361_ssr142:142..156. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931361_ssr49 microsatellite FC931361_ssr49:49..60. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig259 contig Ccv1_Contig259:6..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 4.066e-85
Identity = 157/182 (86.26%), Postives = 171/182 (93.96%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRKVLNSDSYKAELS 709
            YLFKIVIIGDSAVGKSNLL+RYARNEFNP+SKATIGVEFQTQSM IDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL+VYDITR +TF+++ RWLDEL THSDTTVA+ML+GNKCDLESIR VS EEGKSLAE+EGLFFMETSALDSTNVK AFE+VIREI  ++SRK LNSDSYK EL+
Sbjct:   11 YLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYSNISRKQLNSDSYKEELT 192          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 2.914e-83
Identity = 155/182 (85.16%), Postives = 170/182 (93.41%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRKVLNSDSYKAELS 709
            YLFKIV+IGDSAVGKSNLLSRYARNEF+ +SKATIGVEFQTQSMEI+GKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL+VYDITRRTTF+S+ RWLDELK HSDTTVARMLVGNKCDLE+IR VS EEGK+LAE EGLFF+ETSALDSTNVK AFE+VI +I  +VSRK LNSD+YK EL+
Sbjct:   11 YLFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARMLVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAFEMVILDIYNNVSRKQLNSDTYKDELT 192          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 1.407e-61
Identity = 115/172 (66.86%), Postives = 144/172 (83.72%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRKVL 679
            Y+FK+V+IGDSAVGKS LL+R+ARNEFN  SKATIGVEFQT+++ ID + VKAQIWDTAGQER+RAVTSAYYRGAVGA++VYDIT+R +FD ++RWL+EL+ H+D  +  ML+GNK DL ++R V TE+ K  AE E LFFMETSAL+STNV+NAF  V+ EI + VS+K L
Sbjct:   17 YVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKNL 188          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.838e-61
Identity = 111/181 (61.33%), Postives = 149/181 (82.32%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRKVLNSDSYKAEL 706
            YLFK+V+IGDS VGKSNLLSR+ RNEF+  SK+TIGVEF T+S+++DGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDIT+  TF+++ RWL EL+ H+D+ +  MLVGNK DL+ +R+V TE  ++  E EGL F+ETSAL+STNV+ AF+ ++ EI   VS+KVL+S+  + ++
Sbjct:   11 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHIVSKKVLDSEDNRPKI 191          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.838e-61
Identity = 112/174 (64.37%), Postives = 143/174 (82.18%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRKVLNS 685
            YLFK+V+IGDS VGKSNLLSR+ RNEFN  SK+TIGVEF T+S+ IDGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TR TTF++  RWL EL+ H+D  +  ML+GNK DL  +  VSTE+GK+ AE E L+FMETSAL++TNV+NAF  V+ +I + VS++ + +
Sbjct:   12 YLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKRAVEA 185          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.135e-61
Identity = 113/175 (64.57%), Postives = 146/175 (83.43%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRKVLNSD 688
            Y+FK+V+IGDSAVGKS +L+R+ARNEF+  SK+TIGVEFQT+++ ID K VKAQIWDTAGQER+RAVTSAYYRGAVGA++VYDIT+R TFD I RWL+EL+ H+D  +  +L+GNKCDL + R+V TE+ K  AE EGLFF+ETSAL++TNV++AF  V+ EI   V++K L +D
Sbjct:   16 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKSLAAD 190          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.348e-61
Identity = 115/172 (66.86%), Postives = 139/172 (80.81%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRKVL 679
            YLFK+V+IGDS VGKSNLLSR++RNEFN  SK+TIGVEF T+S+ +D K VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDITR  TF+++ RWL EL+ H+D  +  MLVGNK DL  +R VSTE+ K+ AE E  FFMETSAL+S NV+NAF  V+ EI + V RK L
Sbjct:   13 YLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKAL 184          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 9.122e-61
Identity = 111/170 (65.29%), Postives = 142/170 (83.53%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRK 673
            YLFK+V+IGDS VGKSNLLSR+ RNEF+  SK+TIGVEF T+S+++DGK VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TR +TF+++ RWL EL+ H+D  +  MLVGNK DL  +  V T+EGK+ AE E L+FMETSAL+STNV+NAF  V+ +I + VS++
Sbjct:   13 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKR 182          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.032e-60
Identity = 110/181 (60.77%), Postives = 145/181 (80.11%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRKVLNSDSYKAEL 706
            YLFK+V+IGDS VGKSNLLSR+ +NEFN  SK+TIGVEF T++ +++GK VKAQIWDTAGQER+RA+TSAYYRGAVGAL++YD+TR  TF++ +RWL EL+ H+D  +  ML+GNKCDL  +  V TEE K+ AE E L+FMETSALD+TNV+NAF  V+ +I + VS++ ++     A+L
Sbjct:   12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKRSVDGGGESADL 192          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.527e-60
Identity = 109/174 (62.64%), Postives = 142/174 (81.61%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRKVLNS 685
            YLFK+V+IGDS VGKSNLLSR+ +NEFN  SK+TIGVEF T+S+ ID K +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TR  T+++++RWL EL+ H+D  +  ML+GNK DL  +  VST+E K LAE EGL+FMETSAL++TNV+NAF   + +I + VS+K + +
Sbjct:   12 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKKAVEA 185          
The following BLAST results are available for this feature:
BLAST of FC931361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ARA4_ARATH4.066e-8586.26Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
ARA1_ARATH2.914e-8385.16Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
RGP1_ORYSJ1.407e-6166.86Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
YPTC6_CHLRE1.838e-6161.33Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RB11E_LOTJA1.838e-6164.37Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RB11A_LOTJA3.135e-6164.57Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RB11B_TOBAC5.348e-6166.86Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RIC2_ORYSJ9.122e-6165.29Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RAA1A_ARATH2.032e-6060.77Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
YPT3_NICPL4.527e-6062.64Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]

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Properties
Property NameValue
Genbank descriptionC34104C09EF PostHarvP1 Citrus clementina cDNA clone C34104C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931361 ID=FC931361; Name=FC931361; organism=Citrus clementina; type=EST; length=711bp
GATGTCTGTGCCAGCTTGACACCAGTCGCAGCACCACCACCATTATTGTT
ATTTATTTATTTTTTTTATTTTTTTTCCTTTTAGCTTCCAGTTTCCATTC
AAGGGAATTCAATTCAAAACGATGTCGTCGTCGGATGAAGAAGGAGGAGG
AGGAGGGGAGGAGTACTTGTTCAAGATCGTGATAATCGGCGACTCGGCGG
TGGGGAAATCGAACCTACTGTCTCGTTACGCTCGGAACGAGTTCAATCCT
CACTCGAAGGCGACAATTGGAGTCGAGTTTCAAACGCAGAGCATGGAGAT
CGACGGCAAGGAAGTCAAGGCTCAGATTTGGGACACCGCCGGCCAGGAGC
GCTTCCGCGCCGTCACTTCTGCTTACTACAGAGGCGCCGTCGGTGCTCTC
ATTGTTTACGACATTACCAGGCGTACCACTTTTGACAGCATCTCTCGCTG
GCTCGATGAGCTCAAGACTCATTCTGATACCACTGTGGCAAGGATGCTGG
TCGGGAACAAATGTGATTTGGAGAGTATCCGGAATGTGAGCACTGAAGAA
GGCAAAAGCCTTGCAGAAGCAGAAGGGTTGTTTTTCATGGAAACTTCTGC
ATTGGACTCGACGAATGTTAAAAATGCTTTTGAGATTGTCATCCGAGAGA
TTTNACAGCATGTCAGCAGGAAGGTCCTGAATTCAGATAGTTACAAAGCT
GAATTATCTCT
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