FC931374

Overview
NameFC931374
Unique NameFC931374
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931374_ssr474 microsatellite FC931374_ssr474:474..485. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6281 contig Ccv1_Contig6281:32..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931374 vs. ExPASy Swiss-Prot
Match: SUCA_ORYSJ (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=Os07g0577700 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.332e-72
Identity = 93/111 (83.78%), Postives = 97/111 (87.39%), Query Frame = 1
Query:  367 EEGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRGGIV 699
            ++G TEHLGLPVFNSVAEAKAETKANASVIYVPPPF            LDLVVCITEGIPQHDMV+VKAALN+QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGR GIV
Sbjct:   76 KKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVKVKAALNKQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIV 186          

HSP 2 Score: 102.449 bits (254), Expect = 6.332e-72
Identity = 50/68 (73.53%), Postives = 59/68 (86.76%), Query Frame = 2
Query:  179 LSTSAAPAAHSRYYGSSAAAS-QPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 379
            L ++A+   H+R + ++AAA+  PAVFVDK+TRVICQGITGKNGTFHTEQAIEYGT MVGGVTPKKGG
Sbjct:   12 LGSAASRLLHARGFAAAAAAAPSPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTTMVGGVTPKKGG 79          
BLAST of FC931374 vs. ExPASy Swiss-Prot
Match: SUCA1_ARATH (Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08300 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.043e-68
Identity = 89/111 (80.18%), Postives = 94/111 (84.68%), Query Frame = 1
Query:  367 EEGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRGGIV 699
            ++G TEHLGLPVFNSVAEAKA+TKANASVIYVP PF            LDL+VCITEGIPQHDMVRVK ALN QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPG+ GIV
Sbjct:   91 KKGGTEHLGLPVFNSVAEAKADTKANASVIYVPAPFAAAAIMEGIEAELDLIVCITEGIPQHDMVRVKHALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIV 201          

HSP 2 Score: 98.2117 bits (243), Expect = 4.043e-68
Identity = 59/97 (60.82%), Postives = 66/97 (68.04%), Query Frame = 2
Query:   95 MARQALAKLIGSIG--CRRPSTASSVSHYRLSTSAAPAAHSRYYGSSAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 379
            M+RQ +A+LIGS+    RR ST  S   +    S      SR + S       AVFVDKNTRV+CQGITGKNGTFHTEQAIEYGTKMV GVTPKKGG
Sbjct:    1 MSRQ-VARLIGSLSSKARRCSTGGS-EVFPSCQSLTSLTQSRSFASDPHPPA-AVFVDKNTRVLCQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGG 94          
BLAST of FC931374 vs. ExPASy Swiss-Prot
Match: SUCA2_ARATH (Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial OS=Arabidopsis thaliana GN=At5g23250 PE=1 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 6.877e-68
Identity = 90/111 (81.08%), Postives = 95/111 (85.59%), Query Frame = 1
Query:  367 EEGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRGGIV 699
            ++G TEHLGLPVFN+VAEAKAETKANASVIYVP PF            LDL+VCITEGIPQHDMVRVKAALN QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPG+ GIV
Sbjct:   86 KKGGTEHLGLPVFNTVAEAKAETKANASVIYVPAPFAAAAIMEGLAAELDLIVCITEGIPQHDMVRVKAALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIV 196          

HSP 2 Score: 95.1301 bits (235), Expect = 6.877e-68
Identity = 56/100 (56.00%), Postives = 66/100 (66.00%), Query Frame = 2
Query:   95 MARQALAKLIGSI-----GCRRPSTASSVSHYRLSTSAAPAAHSRYYGSSAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 379
            M+RQ + +L+GS+     GC   S   S++             SR +G++      AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMV GVTPKKGG
Sbjct:    1 MSRQ-VTRLLGSLRHSGGGCSGSSKVCSLTSL---------VQSRSFGTTPPPPA-AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGG 89          
BLAST of FC931374 vs. ExPASy Swiss-Prot
Match: SUCA_RAT (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Rattus norvegicus GN=Suclg1 PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 9.415e-55
Identity = 77/110 (70.00%), Postives = 83/110 (75.45%), Query Frame = 1
Query:  370 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRGGIV 699
            +G  +HLGLPVFN+V EAK +T A ASVIYVPPPF            + LVVCITEGIPQ DMVRVK  L RQ KTRLIGPNCPGII PGECKIGIMPG+IHK GR GIV
Sbjct:   90 KGGKKHLGLPVFNTVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVKHKLTRQGKTRLIGPNCPGIINPGECKIGIMPGHIHKKGRIGIV 199          

HSP 2 Score: 80.4925 bits (197), Expect = 9.415e-55
Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 2
Query:  227 SAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 379
            S  AS+  +++DKNT+VICQG TGK GTFH++QA+EYGTK+VGG TP KGG
Sbjct:   42 SYTASRKNIYIDKNTKVICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGG 92          
BLAST of FC931374 vs. ExPASy Swiss-Prot
Match: SUCA_MOUSE (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Mus musculus GN=Suclg1 PE=1 SV=4)

HSP 1 Score: 152.14 bits (383), Expect = 4.621e-54
Identity = 75/110 (68.18%), Postives = 82/110 (74.55%), Query Frame = 1
Query:  370 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRGGIV 699
            +G  +HLGLPVFN+V EAK +T A ASVIYVPPPF            + LVVCITEGIPQ DMVRVK  L RQ  TRLIGPNCPG+I PGECKIGIMPG+IHK GR GIV
Sbjct:   90 KGGQKHLGLPVFNTVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVKHRLTRQGTTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIV 199          

HSP 2 Score: 80.8777 bits (198), Expect = 4.621e-54
Identity = 37/77 (48.05%), Postives = 53/77 (68.83%), Query Frame = 2
Query:  149 STASSVSHYRLSTSAAPAAHSRYYGSSAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 379
            S++S ++  RL +       +     S  AS+  +++DKNT++ICQG TGK GTFH++QA+EYGTK+VGG TP KGG
Sbjct:   16 SSSSGLAAARLLSRTFLLQQNGIRHGSYTASRKHIYIDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGG 92          
BLAST of FC931374 vs. ExPASy Swiss-Prot
Match: SUCA_DICDI (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=scsA PE=1 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 4.626e-54
Identity = 75/110 (68.18%), Postives = 86/110 (78.18%), Query Frame = 1
Query:  370 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRGGIV 699
            +G  +HL LPVFN+V EAK  T ANA+VIYVPPP             ++LVVCITEGIPQ DMV+VK  LN+Q+KTRLIGPNCPGIIKPGECKIGIMPG+IHKPG+ GIV
Sbjct:   62 KGGQKHLDLPVFNTVKEAKEATGANATVIYVPPPHAAAAIKEAIDAEMELVVCITEGIPQQDMVKVKYLLNKQNKTRLIGPNCPGIIKPGECKIGIMPGHIHKPGKIGIV 171          

HSP 2 Score: 77.7962 bits (190), Expect = 4.626e-54
Identity = 33/57 (57.89%), Postives = 46/57 (80.70%), Query Frame = 2
Query:  209 SRYYGSSAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 379
            +R +G    +++P+V ++K+T+VICQG TG  GTFH++QAIEYGT MVGGV+P KGG
Sbjct:    8 ARNFGKRFFSTKPSVLINKHTKVICQGFTGNQGTFHSKQAIEYGTNMVGGVSPGKGG 64          
BLAST of FC931374 vs. ExPASy Swiss-Prot
Match: SUCA_BOVIN (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Bos taurus GN=SUCLG1 PE=2 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 2.268e-53
Identity = 75/110 (68.18%), Postives = 82/110 (74.55%), Query Frame = 1
Query:  370 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRGGIV 699
            +G   HLGLPVFN+V EAK +T A ASVIYVPPPF            + LVVCITEGIPQ DMVRVK  L RQ KTRL+GPNCPG+I PGECKIGIMPG+IHK GR GIV
Sbjct:   90 KGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAVAAIDEAIEAEVSLVVCITEGIPQQDMVRVKHKLLRQGKTRLVGPNCPGVINPGECKIGIMPGHIHKKGRVGIV 199          

HSP 2 Score: 77.7962 bits (190), Expect = 2.268e-53
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 2
Query:  149 STASSVSHYRLSTSAAPAAHSRYYGSSAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 379
            S +S ++  RL + A     +     S   S+  ++VD+NT++ICQG TGK GTFH++QA+EYGTK+VGG TP KGG
Sbjct:   16 SGSSGLAAARLLSRAFLLQQNGIRHCSYTTSRKHLYVDRNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGG 92          
BLAST of FC931374 vs. ExPASy Swiss-Prot
Match: SUCA_PIG (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Sus scrofa GN=SUCLG1 PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.268e-53
Identity = 76/110 (69.09%), Postives = 82/110 (74.55%), Query Frame = 1
Query:  370 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRGGIV 699
            +G   HLGLPVFN+V EAK +T A ASVIYVPPPF            + LVVCITEGIPQ DMVRVK  L RQ KTRLIGPNCPG+I PGECKIGIMPG+IHK GR GIV
Sbjct:   90 KGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIV 199          

HSP 2 Score: 78.1814 bits (191), Expect = 2.268e-53
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 2
Query:  227 SAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 379
            S  AS+  ++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG
Sbjct:   42 SYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGG 92          
BLAST of FC931374 vs. ExPASy Swiss-Prot
Match: SUCA_DROME (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Drosophila melanogaster GN=Scsalpha PE=2 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 2.634e-48
Identity = 69/111 (62.16%), Postives = 84/111 (75.68%), Query Frame = 1
Query:  367 EEGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRGGIV 699
            ++G T+HLGLPVF SVAEAK  T  +A+VIYVPPP             + L+VCITEG+PQHDMV+VK AL  QSK+RL+GPNCPGII P +CKIGIMPG+IHK G+ G+V
Sbjct:   71 KKGGTQHLGLPVFASVAEAKKATDPHATVIYVPPPGAAAAIIEALEAEIPLIVCITEGVPQHDMVKVKHALISQSKSRLVGPNCPGIIAPEQCKIGIMPGHIHKRGKIGVV 181          

HSP 2 Score: 69.707 bits (169), Expect = 2.634e-48
Identity = 28/38 (73.68%), Postives = 36/38 (94.74%), Query Frame = 2
Query:  266 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 379
            ++RVICQG TGK GTFH++QA+EYGTK+VGG++PKKGG
Sbjct:   37 DSRVICQGFTGKQGTFHSQQALEYGTKLVGGISPKKGG 74          
BLAST of FC931374 vs. ExPASy Swiss-Prot
Match: SUCD_COXBU (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Coxiella burnetii GN=sucD PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.076e-46
Identity = 63/110 (57.27%), Postives = 77/110 (70.00%), Query Frame = 1
Query:  370 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRGGIV 699
            +G   HLGLP+FNSV EA  ET A+A++I+VP PF            + LVVCITEGIP  DM+ VKA L +    R+IGPNCPG+I PGECKIGIMPG+IH+ G+ GIV
Sbjct:   43 KGGQSHLGLPIFNSVHEAVEETSADATMIFVPAPFCKDSIIEAVDAGVRLVVCITEGIPVLDMLEVKAYLRQHPDVRMIGPNCPGVITPGECKIGIMPGHIHQRGKVGIV 152          

HSP 2 Score: 78.5666 bits (192), Expect = 1.076e-46
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 2
Query:  248 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGLS 385
            ++ +DK TRV+CQG TGK GTFH+EQAIEYGT+MVGGVTP KGG S
Sbjct:    2 SILIDKETRVLCQGFTGKQGTFHSEQAIEYGTQMVGGVTPGKGGQS 47          
The following BLAST results are available for this feature:
BLAST of FC931374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SUCA_ORYSJ6.332e-7283.78Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCA1_ARATH4.043e-6880.18Succinyl-CoA ligase [GDP-forming] subunit alpha-1,... [more]
SUCA2_ARATH6.877e-6881.08Succinyl-CoA ligase [GDP-forming] subunit alpha-2,... [more]
SUCA_RAT9.415e-5570.00Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_MOUSE4.621e-5468.18Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_DICDI4.626e-5468.18Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_BOVIN2.268e-5368.18Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_PIG2.268e-5369.09Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_DROME2.634e-4862.16Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCD_COXBU1.076e-4657.27Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]

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Properties
Property NameValue
Genbank descriptionC34104D11EF PostHarvP1 Citrus clementina cDNA clone C34104D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931374 ID=FC931374; Name=FC931374; organism=Citrus clementina; type=EST; length=736bp
GGAGAATCTTTTTCTTCAATATATTTTGGGAAAAAAGAGAGAGACGAACT
CGAGGGAGAAAATCAGCGAATCAGATTAAAGTGAAGTGAATCAAATGGCT
CGCCAAGCCTTGGCCAAGCTGATCGGCTCGATCGGATGTCGCAGACCCTC
TACTGCTTCTTCCGTTTCACATTACAGATTATCAACGTCGGCGGCGCCGG
CGGCCCACTCTCGATATTATGGGTCGTCGGCGGCGGCGTCTCAGCCGGCA
GTTTTCGTCGACAAAAACACTCGAGTTATATGCCAAGGCATCACCGGAAA
AAACGGCACGTTCCATACCGAACAAGCCATCGAATACGGCACCAAAATGG
TGGGTGGCGTGACGCCGAAGAAGGGTGGACTGAGCACTTGGGACTTCCTG
TATTCAACTCGGTTGCTGAAGCTAAGGCTGAAACGAAGGCTAATGCTTCT
GTCATTTATGTTCCTCCGCCATTTGCTGCTGCTGCTATCATGGAGGCTAT
GGAGGCTGAGTTGGATCTTGTCGTCTGTATCACCGAAGGAATCCCTCAAC
ACGATATGGTGCGAGTGAAAGCTGCTCTAAACAGGCAATCTAAAACTCGG
CTGATTGGTCCCAACTGCCCTGGTATCATCAAACCTGGAGAATGTAAGAT
TGGCATTATGCCTGGGTATATTCACAAACCTGGGCGGGGTGGAATTGTTC
TCGATCTGGTACCTTGACTACGAGCAGTTTTCAACA
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