FC931387

Overview
NameFC931387
Unique NameFC931387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931387_ssr218 microsatellite FC931387_ssr218:218..232. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC931387 vs. ExPASy Swiss-Prot
Match: PUR7_ARATH (Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic OS=Arabidopsis thaliana GN=PUR7 PE=2 SV=2)

HSP 1 Score: 245.743 bits (626), Expect = 4.920e-66
Identity = 131/216 (60.65%), Postives = 153/216 (70.83%), Query Frame = 1
Query:   19 MAECMRTTLNPPKTPLHSNKISAPKLXXXXXXXXXGTKPNSSNSNNYPRISLSVMSNKSXXXXXXXXXXXXXXXLSLDAVISSNRKAELLGDIKGSLSNRLSETNLHLTVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYIK 666
            MA+C+R+TLNP +TP    + +  K             P     N YP+    VMS +                LSLD +++SNRK E+LG IK SLSN LSETNL  TVPGLKS+ +GKVRDIYD GDYLVL+TTDR SAFDR LASIPFKGQVLNETSLWWF+ T+HITPNA++SSPD+NV IAKKCSV P+EFVVRG+VTGSTDTSLWTVY K
Sbjct:    1 MAQCVRSTLNPVRTPQSFTRKAYVKSPAFASVSFLRAVPEF---NKYPKPCSLVMSCQGKAQNQQEERPQ----LSLDDLVTSNRKGEVLGTIKDSLSNCLSETNLLATVPGLKSRIKGKVRDIYDAGDYLVLITTDRLSAFDRNLASIPFKGQVLNETSLWWFNNTQHITPNAIVSSPDRNVVIAKKCSVFPIEFVVRGYVTGSTDTSLWTVYNK 209          

HSP 2 Score: 26.5646 bits (57), Expect = 4.920e-66
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  660 HKGIRNYCGNAL 695
            +KG+RNYCGN L
Sbjct:  208 NKGVRNYCGNEL 219          
BLAST of FC931387 vs. ExPASy Swiss-Prot
Match: PUR7_VIGAC (Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic (Fragment) OS=Vigna aconitifolia GN=PUR7 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 2.594e-58
Identity = 109/142 (76.76%), Postives = 125/142 (88.03%), Query Frame = 1
Query:  250 DAVISSNRKAELLGDI-KGSLSNRLSETNLHLTVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYIKAS 672
            D++++S  + +++  I K ++SN LSETNLH TVPGL SKTRGKVRDIYD GDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWF++T+ I PNAV+S+PDKNVTIAKKCSV PVEFV RGFVTGSTDTSLWTVY K +
Sbjct:   46 DSLVNSPHRNDVVDVIRKSAISNCLSETNLHNTVPGLVSKTRGKVRDIYDAGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFERTKQIVPNAVVSAPDKNVTIAKKCSVFPVEFVARGFVTGSTDTSLWTVYNKGA 187          

HSP 2 Score: 25.409 bits (54), Expect = 2.594e-58
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  660 HKGIRNYCGNAL 695
            +KG RNYCGN L
Sbjct:  184 NKGARNYCGNVL 195          
BLAST of FC931387 vs. ExPASy Swiss-Prot
Match: PUR7_LEGPL (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Legionella pneumophila (strain Lens) GN=purC PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.704e-35
Identity = 69/101 (68.32%), Postives = 82/101 (81.19%), Query Frame = 1
Query:  364 KTRGKVRDIYDGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYIK 666
            K +GKVRD YD GD L+LVTTDRQSAFDR LA++P+KGQVLN TS+WWF  T+ I PN +I+ PD NV IAKKC + PVEFVVRG+++GST TSLWT Y K
Sbjct:   15 KYKGKVRDTYDLGDQLILVTTDRQSAFDRCLAAVPYKGQVLNLTSVWWFKNTQSIVPNHLIAVPDPNVAIAKKCKIFPVEFVVRGYISGSTSTSLWTQYQK 115          
BLAST of FC931387 vs. ExPASy Swiss-Prot
Match: PUR7_LEGPA (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Legionella pneumophila (strain Paris) GN=purC PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.226e-35
Identity = 68/101 (67.33%), Postives = 82/101 (81.19%), Query Frame = 1
Query:  364 KTRGKVRDIYDGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYIK 666
            K +GKVRD YD GD L+LVTTDRQSAFDR LA++P+KGQVLN TS+WWF  T+ I PN +I+ PD NV IAKKC + P+EFVVRG+++GST TSLWT Y K
Sbjct:   15 KYKGKVRDTYDLGDQLILVTTDRQSAFDRCLAAVPYKGQVLNLTSVWWFKNTQSIVPNHLIAVPDPNVAIAKKCKIFPIEFVVRGYISGSTSTSLWTQYQK 115          
BLAST of FC931387 vs. ExPASy Swiss-Prot
Match: PUR72_AGRT5 (Putative phosphoribosylaminoimidazole-succinocarboxamide synthase 2 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=purC2 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.224e-25
Identity = 57/116 (49.14%), Postives = 81/116 (69.83%), Query Frame = 1
Query:  346 VPGLKSKTRGKVRDIYDGGD-YLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYIKASEIIVAM 690
            +P L +  RGKVR+ YD  D   ++++TDR SAFD+IL  IP+KGQVL +T+ +WF+QT+ I PN V+S PD NV I K+  ++PVE VVRG++ G+T TS+ T+Y K    +  M
Sbjct:    9 IPELPNYYRGKVRENYDLPDGNRIIISTDRLSAFDQILTCIPYKGQVLTQTARYWFEQTKDICPNHVVSYPDPNVVIGKRLDILPVEVVVRGYLAGTTGTSILTLYKKGERQMYGM 124          
BLAST of FC931387 vs. ExPASy Swiss-Prot
Match: PUR72_CAUCR (Putative phosphoribosylaminoimidazole-succinocarboxamide synthase 2 OS=Caulobacter crescentus GN=purC2 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23
Identity = 57/108 (52.78%), Postives = 75/108 (69.44%), Query Frame = 1
Query:  346 VPGLKSKTRGKVRDIYDGGD-YLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYIK 666
            +P L +  RGKVRD YD  D   V+V +DR SAFDR L ++P KGQVL ET+ +WFD T  I PN V++ PD NV I K+  ++PVE VVRG++ G+T TS+ T+Y K
Sbjct:   14 LPCLPNHYRGKVRDNYDLPDGRRVIVASDRLSAFDRNLCAVPGKGQVLTETARFWFDATADICPNHVVAYPDPNVLIGKRLKMLPVELVVRGYLAGTTSTSILTLYNK 121          
BLAST of FC931387 vs. ExPASy Swiss-Prot
Match: PUR72_RHILO (Putative phosphoribosylaminoimidazole-succinocarboxamide synthase 2 OS=Rhizobium loti GN=purC2 PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.267e-22
Identity = 51/116 (43.97%), Postives = 75/116 (64.66%), Query Frame = 1
Query:  346 VPGLKSKTRGKVRDIYDGGD-YLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYIKASEIIVAM 690
            +P L    +GKVR+ YD  D   +++ TDR SAFD IL SIPFKG++L +T+ +WF++T  I PN V+  PD NV +  +  ++PVE VVRG++ G+T TS+ T Y +    +  M
Sbjct:    9 IPELPGYYKGKVRENYDLADGRRIIIATDRLSAFDIILTSIPFKGEILTQTARYWFEETADICPNHVLEYPDPNVVVGTRLDILPVEIVVRGYLAGTTSTSILTRYRRGEREMYGM 124          
BLAST of FC931387 vs. ExPASy Swiss-Prot
Match: PUR7_PORGI (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Porphyromonas gingivalis GN=purC PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.641e-20
Identity = 55/130 (42.31%), Postives = 76/130 (58.46%), Query Frame = 1
Query:  307 LSNRLSETNLHLTVPGLKSKTRGKVRDIYD-GGDYLVLVTTDRQSAFDRIL-ASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYIKASEIIVAM 690
            +   L+ T+  L  PG K+   GKVRD+Y    D LV++ TDR SAFD +L A IP+KGQVLN+ +  + D TR I PN  I++PD  VTI  +C    VE V+RG++TGS     W  Y     ++  +
Sbjct:    1 MKETLARTDFRL--PGQKAVYHGKVRDVYTLENDLLVMIATDRISAFDVVLPAGIPYKGQVLNQIAAHYLDATRDIVPNWKIATPDPMVTIGHRCEPFKVEMVIRGYITGSA----WRAYAAGERVLCGL 124          
BLAST of FC931387 vs. ExPASy Swiss-Prot
Match: PUR7_BACFR (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Bacteroides fragilis GN=purC PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.193e-18
Identity = 50/113 (44.25%), Postives = 67/113 (59.29%), Query Frame = 1
Query:  328 TNLHLTVPGLKSKTRGKVRDIYD-GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVY 660
            T      PG KS   GKVRD+Y+  G+ LV+V TDR SAFD +L   IP+KGQ+LN+ +  + D T  I PN  +++PD  VT+   C   PVE +VRG++ GS     W  Y
Sbjct:    5 TKTDFNFPGQKSVYHGKVRDVYNINGEQLVMVATDRISAFDVVLPEGIPYKGQMLNQIAAKFLDATTDICPNWKLATPDPMVTVGVLCEGFPVEMIVRGYLCGSA----WRAY 113          
BLAST of FC931387 vs. ExPASy Swiss-Prot
Match: PUR7_BACFN (Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=purC PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.193e-18
Identity = 50/113 (44.25%), Postives = 67/113 (59.29%), Query Frame = 1
Query:  328 TNLHLTVPGLKSKTRGKVRDIYD-GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVY 660
            T      PG KS   GKVRD+Y+  G+ LV+V TDR SAFD +L   IP+KGQ+LN+ +  + D T  I PN  +++PD  VT+   C   PVE +VRG++ GS     W  Y
Sbjct:    5 TKTDFNFPGQKSVYHGKVRDVYNINGEQLVMVATDRISAFDVVLPEGIPYKGQMLNQIAAKFLDATTDICPNWKLATPDPMVTVGVLCEGFPVEMIVRGYLCGSA----WRAY 113          
The following BLAST results are available for this feature:
BLAST of FC931387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
PUR7_ARATH4.920e-6660.65Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_VIGAC2.594e-5876.76Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_LEGPL1.704e-3568.32Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_LEGPA2.226e-3567.33Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR72_AGRT51.224e-2549.14Putative phosphoribosylaminoimidazole-succinocarbo... [more]
PUR72_CAUCR1.496e-2352.78Putative phosphoribosylaminoimidazole-succinocarbo... [more]
PUR72_RHILO1.267e-2243.97Putative phosphoribosylaminoimidazole-succinocarbo... [more]
PUR7_PORGI2.641e-2042.31Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_BACFR7.193e-1844.25Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
PUR7_BACFN7.193e-1844.25Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]

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Properties
Property NameValue
Genbank descriptionC34104E12EF PostHarvP1 Citrus clementina cDNA clone C34104E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931387 ID=FC931387; Name=FC931387; organism=Citrus clementina; type=EST; length=702bp
GAAAATTTCAAAGCAACAATGGCTGAGTGTATGCGTACAACCTTAAACCC
TCCAAAAACCCCACTTCACAGCAACAAAATCTCAGCTCCAAAACTCTCAT
TCTCATCTTCTTTCTCTTCATTTGGAACAAAACCCAATTCTTCTAATTCA
AACAATTATCCAAGAATCTCTCTATCTGTCATGTCCAACAAGAGCCAGAA
CCAGAACCAGAACCAAAACCACCACCACCACCAACAACACTTGTCTCTTG
ATGCTGTGATTAGCAGCAATCGCAAAGCAGAGCTTCTTGGTGACATCAAA
GGCTCGCTTTCGAACCGTCTCTCCGAGACAAATCTTCACTTGACTGTTCC
CGGTCTCAAATCCAAAACCAGGGGCAAGGTGAGAGATATTTATGATGGCG
GGGATTATCTTGTTCTGGTGACAACGGACCGCCAAAGTGCGTTCGATAGA
ATTCTTGCTTCTATTCCCTTCAAAGGCCAGGTTCTTAATGAAACGAGTTT
GTGGTGGTTTGATCAAACTAGGCACATAACTCCAAATGCAGTCATTTCAT
CTCCAGATAAAAATGTTACAATTGCGAAGAAGTGTTCTGTTATCCCTGTT
GAATTTGTAGTCAGAGGTTTTGTGACTGGAAGTACTGATACCTCTCTGTG
GACGGTTTACATAAAGGCATCCGAAATTATTGTGGCAATGCTCTTCAGAT
GG
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