FC931400

Overview
NameFC931400
Unique NameFC931400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931400 vs. ExPASy Swiss-Prot
Match: PLYD_ASPNG (Pectin lyase D OS=Aspergillus niger GN=pelD PE=1 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.029e-78
Identity = 143/206 (69.42%), Postives = 160/206 (77.67%), Query Frame = 2
Query:   95 MKYALVLTAIVTIASXXXXXXXXXXPEXXXXXXXXXXXXXPVYPTTNEELVSYLGDSEARVIVLSKTFDFTDSEGSTTTGGCLPFGTAPNCQVAINKDNWCHNYEPNAATTTVTYKNAGMLGINIGSNKSLIGEGTSGVIKGRGLRLANGVQNIIVQNIAVTDINARYVWGGDAITLDQADLVWLDHITTARIGRQHYVLGTGADN 712
            MKYA  LTAI  +A+          P              PVYPTT +ELVSYLGD EARVIVLSKTFDFTD+EG+TTT GC P+GTA  CQ+AINKD+WC NYEP+A TTTVTY  AG LGI + SNKSLIGEGTSGVIKGRGLR+ +GV NII+QNIAVTDIN  YVWGGDAITLD+ADLVW+DH+TTARIGRQHYVLGT AD+
Sbjct:    1 MKYAAALTAIAALAARAAAVGVSGTPVGFASSATGGGDATPVYPTTTDELVSYLGDDEARVIVLSKTFDFTDTEGTTTTTGCAPWGTASGCQLAINKDDWCTNYEPDAPTTTVTYNTAGELGITVNSNKSLIGEGTSGVIKGRGLRMVSGVSNIIIQNIAVTDINPEYVWGGDAITLDEADLVWIDHVTTARIGRQHYVLGTDADS 206          
BLAST of FC931400 vs. ExPASy Swiss-Prot
Match: PLYA_ASPNG (Pectin lyase A OS=Aspergillus niger GN=pelA PE=1 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.297e-70
Identity = 126/171 (73.68%), Postives = 148/171 (86.55%), Query Frame = 2
Query:  215 PVYPTTNEELVSYLGDSEARVIVLSKTFDFTDSEGSTTTGGCLPFGTAPNCQVAINKDNWCHNYEPNAATTTVTYKNAGMLGINIGSNKSLIGEGTSGVIKGRGLRLANGVQNIIVQNIAVTDINARYVWGGDAITLDQADLVWLDHITTARIGRQHYVLGTGADN-VSLS 724
            PVYP T +ELVSYLGD EARVIVL+KTFDFTDSEG+TT  GC P+GTA  CQVAI++D+WC NYEP+A + +V Y NAG+LGI + SNKSLIGEG+SG IKG+GLR+ +G +NII+QNIAVTDIN +YVWGGDAITLD  DLVW+DH+TTARIGRQHYVLGT ADN VSL+
Sbjct:   42 PVYPDTIDELVSYLGDDEARVIVLTKTFDFTDSEGTTTGTGCAPWGTASACQVAIDQDDWCENYEPDAPSVSVEYYNAGVLGITVTSNKSLIGEGSSGAIKGKGLRIVSGAENIIIQNIAVTDINPKYVWGGDAITLDDCDLVWIDHVTTARIGRQHYVLGTSADNRVSLT 212          
BLAST of FC931400 vs. ExPASy Swiss-Prot
Match: PLYB_ASPNG (Pectin lyase B OS=Aspergillus niger GN=pelB PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.640e-63
Identity = 111/166 (66.87%), Postives = 138/166 (83.13%), Query Frame = 2
Query:  215 PVYPTTNEELVSYLGDSEARVIVLSKTFDFTDSEGSTTTGGCLPFGTAPNCQVAINKDNWCHNYEPNAATTTVTYKNAGMLGINIGSNKSLIGEGTSGVIKGRGLRLANGVQNIIVQNIAVTDINARYVWGGDAITLDQADLVWLDHITTARIGRQHYVLGTGADN 712
            PVYPTT +ELVSYLGD+E RVI+L +TFDFT +EG+ TT GC P+GTA  CQVAIN  +WC NY+ +A   +VT K AG+L I + SNKS++G+GT GVIKG+GLR+ +G +N+I+QNIAVTDIN +YVWGGDAIT+D +DLVW+DH+TTARIGRQH VLGT ADN
Sbjct:   42 PVYPTTTDELVSYLGDNEPRVIILDRTFDFTGTEGTETTTGCAPWGTASQCQVAINLHSWCDNYQASAPKVSVTDK-AGILPITVNSNKSIVGQGTKGVIKGKGLRVVSGAKNVIIQNIAVTDINPKYVWGGDAITVDDSDLVWIDHVTTARIGRQHIVLGTSADN 206          
BLAST of FC931400 vs. ExPASy Swiss-Prot
Match: PLYA_COLGL (Pectin lyase OS=Colletotrichum gloeosporioides GN=PNLA PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.676e-60
Identity = 106/166 (63.86%), Postives = 130/166 (78.31%), Query Frame = 2
Query:  215 PVYPTTNEELVSYLGDSEARVIVLSKTFDFTDSEGSTTTGGCLPFGTAPNCQVAINKDNWCHNYEPNAATTTVTYKNAGMLGINIGSNKSLIGEGTSGVIKGRGLRLANGVQNIIVQNIAVTDINARYVWGGDAITLDQADLVWLDHITTARIGRQHYVLGTGADN 712
            PVYP+T  EL SYL DS ARVIVL+KTFDFT +EG+TT  GC P+GTA  CQVAINKDNWC NY+PNA   +V+Y  A    + +GSNKSLIG+G+ GVIKG+GLR+ N  +N+I+QNI +T++N +YVWGGDAI+LD  DLVW DH+ T+ IGRQH VLG GA N
Sbjct:   43 PVYPSTTAELASYLKDSSARVIVLTKTFDFTGTEGTTTETGCAPYGTAAACQVAINKDNWCTNYQPNAPKVSVSYDKAPFNPLIVGSNKSLIGQGSKGVIKGKGLRITNSAKNVIIQNIHITNLNPKYVWGGDAISLDGTDLVWFDHVKTSLIGRQHIVLGNGASN 208          
The following BLAST results are available for this feature:
BLAST of FC931400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PLYD_ASPNG1.029e-7869.42Pectin lyase D OS=Aspergillus niger GN=pelD PE=1 S... [more]
PLYA_ASPNG2.297e-7073.68Pectin lyase A OS=Aspergillus niger GN=pelA PE=1 S... [more]
PLYB_ASPNG4.640e-6366.87Pectin lyase B OS=Aspergillus niger GN=pelB PE=1 S... [more]
PLYA_COLGL3.676e-6063.86Pectin lyase OS=Colletotrichum gloeosporioides GN=... [more]
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Properties
Property NameValue
Genbank descriptionC34104G01EF PostHarvP1 Citrus clementina cDNA clone C34104G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931400 ID=FC931400; Name=FC931400; organism=Citrus clementina; type=EST; length=736bp
GATTCATTCTTTGCTTTTCTCCTTGTCGCTTTACAGTTTCACTTGCCTTT
CGGTTACCGTCACTCCTTAAAAACTACCTATTTCCACCTCCAAAATGAAG
TACGCACTTGTTCTCACGGCTATTGTCACCATTGCCTCCAAGGTCGCCGC
TGTCGGCGTTGTTGGCAAACCTGAAGGTTTCGCTGCTGGCGCTACCGGTG
GTGGCAATGCCGCCCCTGTGTACCCTACCACCAACGAGGAGCTGGTCTCT
TACCTCGGTGACTCGGAGGCCCGTGTCATTGTTCTGAGCAAGACTTTCGA
CTTCACCGACAGTGAGGGCTCCACCACGACCGGCGGTTGCCTTCCTTTCG
GTACTGCCCCCAACTGCCAGGTTGCTATCAACAAGGACAACTGGTGCCAC
AACTACGAGCCCAATGCCGCTACCACTACCGTCACCTACAAAAACGCTGG
TATGCTCGGTATCAACATCGGCTCCAACAAGTCCTTGATTGGTGAGGGAA
CTAGCGGTGTTATCAAGGGCCGTGGTCTGCGCCTTGCCAACGGTGTCCAG
AACATCATCGTCCAGAACATTGCTGTCACTGACATCAACGCCCGCTACGT
CTGGGGTGGTGATGCTATCACCCTCGACCAGGCTGACCTGGTCTGGCTCG
ACCACATTACCACTGCCCGCATTGGTCGTCAGCACTACGTCCTGGGTACT
GGAGCTGACAACGTGTCTCTATCACCACAACTTCAT
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