FC931432

Overview
NameFC931432
Unique NameFC931432
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9469 contig Ccv1_Contig9469:5..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931432 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.275e-27
Identity = 78/229 (34.06%), Postives = 121/229 (52.84%), Query Frame = 2
Query:   26 SKTIS*KMASHLGICTPCASEIITGFPSYRSPPLLRNRDFCGRIKAVADNRGSLDHLQRSSLN------QSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKNSAEVKDGVLYITIPK 694
            S  +S K  S +    PC    +  FP  R  P L  R+   +     DN+ +   + R + +      + +P++ +  +S  G+ D +   R+++QM++TM+RI ED     +T P +      G    R PW I++ E++ ++R D+PG+S+ DVKV VE+ +LVIK++  + N           E+ W    Y  Y TR+ LPDN E EK  AE+KDGVLYITIPK
Sbjct:   12 SPILSQKPGSSVKSTPPC----MASFPLRRQLPRLGLRNVRAQAGGDGDNKDNSVEVHRVNKDDQGTAVERKPRRSSIDISPFGLLDPWSPMRSMRQMLDTMDRIFED----AITIPGRN----IGGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHREENGG---------EDCWSRKSYSCYDTRLKLPDNCEKEKVKAELKDGVLYITIPK 219          
BLAST of FC931432 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.711e-27
Identity = 76/219 (34.70%), Postives = 116/219 (52.97%), Query Frame = 2
Query:   65 ICTPCASEIITGFPSYRSPPLLRNRDFCGRIKAVADNRGSLDHLQR--------SSLNQSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWP-SQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKNSAEVKDGVLYITIPK 694
            +C+P A        S     +   R    RI+A      S+D +Q+        SS+ +   ++    VS  G+ D     RT++QM++TM+R+ ED      T P S + R  SG    R PW I+E E++ K+R D+PG+S+ DVK+ VE+++LVIK E+ +           + ++ W      SY TR+ LPDN E +K  AE+K+GVL+ITIPK
Sbjct:   12 LCSPLAPSPSVSSKSATPFSVSFPRKIPSRIRAQDQRENSIDVVQQGQQKGNQGSSVEKRPQQRLTMDVSPFGLLDPLSPMRTMRQMLDTMDRMFED------TMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKE----------DSDDSWSGRSVSSYGTRLQLPDNCEKDKIKAELKNGVLFITIPK 214          
BLAST of FC931432 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.330e-27
Identity = 72/188 (38.30%), Postives = 106/188 (56.38%), Query Frame = 2
Query:  158 KAVADNRGSLDHLQRSSLN---------QSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKNSAEVKDGVLYITIPK 694
            +A  DN+ +   +  SS           + +P + A  VS  G+ D     RT++QM++TM+R+ ED     +T+P +     SG    RTPW I + EN+ K+R D+PG+S+ DVKV VE  MLVIK E  +  +         ++  W  N Y SY TR++LPDNV  +K  AE+K+GVL+I+IPK
Sbjct:   49 RATGDNKDTSVDVHHSSAQGGNNQGTAVERRPTRMALDVSPFGVLDPMSPMRTMRQMIDTMDRLFEDT----MTFPGRNRA--SGTGEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDG-------RDKHSWGRN-YSSYDTRLSLPDNVVKDKIKAELKNGVLFISIPK 222          
BLAST of FC931432 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.267e-27
Identity = 73/187 (39.04%), Postives = 112/187 (59.89%), Query Frame = 2
Query:  134 NRDFCGRIKAVADNRGSLDHLQRSSLNQSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKNSAEVKDGVLYITIPK 694
            N+D    +    +N+G  +   + S  + +P++ A  VS  G+ D     RT++QMM+TM+R+ ED     +T+P  + R   G    R PW I++ EN+ K+R D+PG+S+ +VKV VE+ +LVIK E  ++ E+  D S       W  N Y SY TR++LPDNV+ +K  AE+K+GVL I+IPK
Sbjct:   61 NKDTSVDVHVSNNNQGGNN---QGSAVERRPRRMALDVSPFGLLDPMSPMRTMRQMMDTMDRLFEDT----MTFPGSRNR---GTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEH-KKEESGKDDS-------WGRN-YSSYDTRLSLPDNVDKDKVKAELKNGVLLISIPK 228          
BLAST of FC931432 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.842e-26
Identity = 67/178 (37.64%), Postives = 102/178 (57.30%), Query Frame = 2
Query:  170 DNRGSLDHLQRSSLN---QSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKNSAEVKDGVLYITIPK 694
            DN   + H+ +       + +P++ A  +S  GI D +   R+++Q+++TM+R+ ED     +T+P +      G    R PW I++ E++ ++R D+PG+++ DVKV VE+ MLVIK       E   D S       W S  Y SY TR+ LPDN E +K  AE+K+GVLYITIPK
Sbjct:    6 DNSVEVQHVSKGDQGTAVEKKPRRTAMDISPFGILDPWSPMRSMRQILDTMDRVFEDT----MTFPGRN----IGGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDS-------WSSRTYSSYDTRLKLPDNCEKDKVKAELKNGVLYITIPK 168          
BLAST of FC931432 vs. ExPASy Swiss-Prot
Match: HS21C_WHEAT (Small heat shock protein, chloroplastic OS=Triticum aestivum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.784e-21
Identity = 61/177 (34.46%), Postives = 99/177 (55.93%), Query Frame = 2
Query:  167 ADNRGSLDHLQRSSLNQSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAE-KAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKNSAEVKDGVLYITIPK 694
            A N G+    Q+ +  Q +P++    +S  G+ D     RT++QM++TM+R+ +D     V +P++  R  +   R R PW I E E + K+R D+PG+SR +V+V VE+  LVI+ E K +  E   +G     +  W      SY  R+ALPD  +  +  AE+K+GVL +++PK
Sbjct:   63 AQNAGN----QQGNAVQRRPRRAGFDISPFGLVDPMSPMRTMRQMLDTMDRLFDD----AVGFPTR--RSPAARARRRMPWDIMEDEKEVKMRFDMPGLSREEVRVMVEDDALVIRGEHKKEAGEGQGEGG----DGWWKERSVSSYDMRLALPDECDKSQVRAELKNGVLLVSVPK 225          
BLAST of FC931432 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.576e-20
Identity = 58/169 (34.32%), Postives = 96/169 (56.80%), Query Frame = 2
Query:  197 QRSSLNQSQPKKRAA--PVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQER-VRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKNSAEVKDGVLYITIPK 694
            Q+ +  Q +P++ +A   +S  G+ D     RT++QM++TM+RI +D     + +P+   R + +G    R PW + E + + ++R D+PG+SR +VKV VE+  LVI+ E  +      +GS    +  W      SY  R+ALPD  +  K  AE+K+GVL +T+PK
Sbjct:   67 QQGNAVQRRPRRSSALDGISPFGLVDPMSPMRTMRQMLDTMDRIFDD---VALGFPATPRRSLATG--EVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGS---GDGWWKERSVSSYDMRLALPDECDKSKVRAELKNGVLLVTVPK 227          
BLAST of FC931432 vs. ExPASy Swiss-Prot
Match: HS23C_CHERU (Small heat shock protein, chloroplastic OS=Chenopodium rubrum GN=HSP23 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 55/166 (33.13%), Postives = 88/166 (53.01%), Query Frame = 2
Query:  227 KKRAAPVSSPG---------IWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNV-EFEKNSAEVKDGVLYITIPK 694
            +   AP+S  G         ++D F A R+V Q+M  M+++ME+PF             R   R  R  W +RE E   ++++D+PG+++ DVKV VE++ L+IK+E  +  E        EEE+         YS+RI L  N+ + +   AE+K+GVL +T+PK
Sbjct:   47 RSNRAPISRRGDFPASFFSDVFDPFRATRSVGQLMNLMDQLMENPF---------MAASRGSGRAMRRGWDVREDEEALELKVDMPGLAKEDVKVSVEDNTLIIKSEAEKETE--------EEEQR------RRYSSRIELTPNLYKIDGIKAEMKNGVLKVTVPK 189          
BLAST of FC931432 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.259e-15
Identity = 53/161 (32.92%), Postives = 89/161 (55.28%), Query Frame = 2
Query:  215 QSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNV-EFEKNSAEVKDGVLYITIPK 694
            +S P++R    S   ++D F   R+V Q++  M++ ME+P        + +    SG RRG   W I+E ++   +R+D+PG+SR DVK+ +E+  LVI+ E          G   E+  E   +G   +++RI LPD + + ++  AE+K+GVL + IPK
Sbjct:   55 RSVPRRRGDFFSD--VFDPFSPTRSVSQVLNLMDQFMENPLL-----SATRGMGASGARRG---WDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIRGE----------GKNEEDGGEEGESGNRRFTSRIGLPDKIYKIDEIKAEMKNGVLKVVIPK 195          
BLAST of FC931432 vs. ExPASy Swiss-Prot
Match: HS26M_ARATH (26.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP26.5 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.238e-14
Identity = 36/94 (38.30%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  413 IRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKNSAEVKDGVLYITIPK 694
            ++E ++ YK+R +VPG+++ DVK+ V + +L IK +    ++A  +  + EE+E W S  YG Y+T ++LPD+ + E   AE+K+GVL + IP+
Sbjct:  129 VKEQDDCYKLRYEVPGLTKEDVKITVNDGILTIKGD----HKAEEEKGSPEEDEYWSSKSYGYYNTSLSLPDDAKVEDIKAELKNGVLNLVIPR 218          
The following BLAST results are available for this feature:
BLAST of FC931432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
HS21C_PEA1.275e-2734.06Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS25P_ARATH3.711e-2734.7025.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS21C_SOLLC6.330e-2738.30Small heat shock protein, chloroplastic OS=Solanum... [more]
HS22C_PETHY8.267e-2739.04Small heat shock protein, chloroplastic OS=Petunia... [more]
HS22C_SOYBN1.842e-2637.64Small heat shock protein, chloroplastic (Fragment)... [more]
HS21C_WHEAT1.784e-2134.46Small heat shock protein, chloroplastic OS=Triticu... [more]
HS26P_ORYSJ2.576e-2034.3226.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]
HS23C_CHERU8.575e-1633.13Small heat shock protein, chloroplastic OS=Chenopo... [more]
HS23M_ARATH3.259e-1532.9223.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS26M_ARATH1.238e-1438.3026.5 kDa heat shock protein, mitochondrial OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionC34105A09EF PostHarvP1 Citrus clementina cDNA clone C34105A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931432 ID=FC931432; Name=FC931432; organism=Citrus clementina; type=EST; length=696bp
TCTCAGTATTGGTGACATCTCTCAATCAAAAACTATATCTTAGAAAATGG
CATCTCATCTTGGTATCTGTACTCCCTGTGCGTCCGAAATAATCACCGGT
TTTCCCAGCTACAGGTCTCCACCTTTGTTGAGAAATAGAGACTTTTGTGG
CAGGATAAAGGCCGTGGCAGATAACAGAGGCAGCCTTGATCACTTGCAAA
GATCGTCGCTGAATCAATCCCAGCCAAAAAAGAGAGCGGCCCCAGTTTCA
TCTCCAGGGATATGGGATAGTTTTCCTGCTGCGAGGACGGTGCAACAGAT
GATGGAAACCATGGAAAGAATAATGGAGGATCCTTTTGCTTACGGAGTCA
CTTGGCCTTCACAACAAGAAAGGGTGAGAAGTGGATACAGACGGGGAAGA
ACGCCTTGGGCCATCAGGGAAACGGAAAACGACTACAAGATTAGGTTAGA
CGTGCCTGGCATGAGCAGGAATGATGTTAAGGTACGGGTTGAAGAGAGCA
TGCTCGTAATCAAGGCAGAAAAGGCTCAAAGGAACGAAGCAAACACTGAT
GGAAGTACAGTTGAGGAAGAAGAAGAGTGGCCAAGCAATGGTTACGGAAG
CTACAGCACTAGAATTGCATTGCCTGACAACGTAGAGTTTGAGAAGAATT
CAGCAGAGGTGAAAGATGGCGTACTGTATATAACCATTCCAAAGCC
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