FC931443

Overview
NameFC931443
Unique NameFC931443
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15327 contig Ccv1_Contig15327:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931443 vs. ExPASy Swiss-Prot
Match: PIN1_MALDO (Peptidyl-prolyl cis-trans isomerase 1 OS=Malus domestica GN=PIN1 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.976e-50
Identity = 94/115 (81.74%), Postives = 109/115 (94.78%), Query Frame = 3
Query:  147 NQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 491
            NQVRASHILIKHQGSRRKASWKDPEG++I NTTR+SAVSQL+A+RDDI+SGKAKFD++A+R SDCSSAKRGGDLG FGR QMQKPFEEAT+ LK+GE+S++VDTDSGVH+I RTG
Sbjct:    7 NQVRASHILIKHQGSRRKASWKDPEGQIIRNTTRDSAVSQLKALRDDILSGKAKFDDLAARYSDCSSAKRGGDLGPFGRNQMQKPFEEATFALKVGEMSDIVDTDSGVHIIKRTG 121          
BLAST of FC931443 vs. ExPASy Swiss-Prot
Match: PIN1_ARATH (Peptidyl-prolyl cis-trans isomerase 1 OS=Arabidopsis thaliana GN=PIN1 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.301e-49
Identity = 91/114 (79.82%), Postives = 108/114 (94.74%), Query Frame = 3
Query:  147 NQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 488
            +QV+ASHILIKHQGSRRKASWKDPEG++I  TTRE+AV QL++IR+DIVSGKA F+EVA+R+SDCSSAKRGGDLG+FGRGQMQKPFEEATY LK+G+IS++VDTDSGVH+I RT
Sbjct:    5 DQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRT 118          
BLAST of FC931443 vs. ExPASy Swiss-Prot
Match: PIN1_DIGLA (Peptidyl-prolyl cis-trans isomerase 1 OS=Digitalis lanata GN=PARV12.8 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.050e-43
Identity = 84/116 (72.41%), Postives = 102/116 (87.93%), Query Frame = 3
Query:  144 ANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 491
            + +VRASHILIKHQGSRRK+SWKDP+G +IS TTR+ AVSQLQ++R +++S  A F ++ASR S CSSAKRGGDLG FGRGQMQKPFEEAT+ LK+GEIS++VDTDSGVH+I RTG
Sbjct:    3 SEKVRASHILIKHQGSRRKSSWKDPDGSLISATTRDDAVSQLQSLRQELLSDPASFSDLASRHSHCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEISDIVDTDSGVHIIKRTG 118          
BLAST of FC931443 vs. ExPASy Swiss-Prot
Match: DOD_DROME (Protein dodo OS=Drosophila melanogaster GN=dod PE=1 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 4.432e-26
Identity = 56/113 (49.56%), Postives = 79/113 (69.91%), Query Frame = 3
Query:  147 NQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMR 485
            ++V   H+L+KH+GSRR +SW++         T+E A   L+  R+ IV  +A FDE+A   SDCSSAKRGGDLG FGRGQMQ  FE+A + L + ++S +VD+DSG+H+I+R
Sbjct:   56 DEVHCLHLLVKHKGSRRPSSWREAN----ITRTKEEAQLLLEVYRNKIVQQEATFDELARSYSDCSSAKRGGDLGKFGRGQMQAAFEDAAFKLNVNQLSGIVDSDSGLHIILR 164          
BLAST of FC931443 vs. ExPASy Swiss-Prot
Match: PIN1_RHIOR (Peptidyl-prolyl cis-trans isomerase pin1 OS=Rhizopus oryzae GN=pin1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.752e-25
Identity = 60/113 (53.10%), Postives = 80/113 (70.80%), Query Frame = 3
Query:  150 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 488
            +VRASH+LIK + SRR +SW++         ++E A+  L   +  I SG+     +A+  SDC+SAKRGGDLG F RGQMQKPFEEAT+ L++GE+S+ V TDSGVHLI+RT
Sbjct:   41 RVRASHLLIKSRESRRPSSWREEH----ITRSKEEALKILTDFQHKIESGQETLSALATNYSDCTSAKRGGDLGYFERGQMQKPFEEATFALQVGELSKPVWTDSGVHLILRT 149          
BLAST of FC931443 vs. ExPASy Swiss-Prot
Match: PIN1_MACFA (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 OS=Macaca fascicularis GN=PIN1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.432e-24
Identity = 56/113 (49.56%), Postives = 77/113 (68.14%), Query Frame = 3
Query:  150 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 488
            +VR SH+L+KH  SRR +SW+  +       T+E A+  +      I SG+  F+ +AS+ SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct:   54 RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162          
BLAST of FC931443 vs. ExPASy Swiss-Prot
Match: PIN1_HUMAN (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 OS=Homo sapiens GN=PIN1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.432e-24
Identity = 56/113 (49.56%), Postives = 77/113 (68.14%), Query Frame = 3
Query:  150 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 488
            +VR SH+L+KH  SRR +SW+  +       T+E A+  +      I SG+  F+ +AS+ SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct:   54 RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162          
BLAST of FC931443 vs. ExPASy Swiss-Prot
Match: PIN1_BOVIN (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 OS=Bos taurus GN=PIN1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.432e-24
Identity = 56/113 (49.56%), Postives = 77/113 (68.14%), Query Frame = 3
Query:  150 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 488
            +VR SH+L+KH  SRR +SW+  +       T+E A+  +      I SG+  F+ +AS+ SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct:   54 RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162          
BLAST of FC931443 vs. ExPASy Swiss-Prot
Match: PIN1_MOUSE (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 OS=Mus musculus GN=Pin1 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.076e-24
Identity = 55/113 (48.67%), Postives = 77/113 (68.14%), Query Frame = 3
Query:  150 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 488
            +VR SH+L+KH  SRR +SW+  +       ++E A+  +      I SG+  F+ +AS+ SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct:   56 KVRCSHLLVKHSQSRRPSSWRQEK----ITRSKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGPFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 164          
BLAST of FC931443 vs. ExPASy Swiss-Prot
Match: SSP1_NEUCR (Peptidyl-prolyl cis-trans isomerase ssp-1 OS=Neurospora crassa GN=ssp-1 PE=1 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 4.586e-23
Identity = 55/112 (49.11%), Postives = 74/112 (66.07%), Query Frame = 3
Query:  150 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMR 485
            ++R +H+L+KH  SRR +SW++ E       T++ A++ LQ     I SG     E+A   SDCSSA++ GDLG FGRG MQK FE+A + LK GEIS +VDT SG+HLI R
Sbjct:   73 KIRCAHLLVKHNQSRRPSSWRESE----ITRTKQEALTTLQGFEQRIKSGSISLGELALTESDCSSARKRGDLGYFGRGDMQKEFEDAAFALKPGEISGIVDTASGLHLIER 180          
The following BLAST results are available for this feature:
BLAST of FC931443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PIN1_MALDO1.976e-5081.74Peptidyl-prolyl cis-trans isomerase 1 OS=Malus dom... [more]
PIN1_ARATH8.301e-4979.82Peptidyl-prolyl cis-trans isomerase 1 OS=Arabidops... [more]
PIN1_DIGLA1.050e-4372.41Peptidyl-prolyl cis-trans isomerase 1 OS=Digitalis... [more]
DOD_DROME4.432e-2649.56Protein dodo OS=Drosophila melanogaster GN=dod PE=... [more]
PIN1_RHIOR3.752e-2553.10Peptidyl-prolyl cis-trans isomerase pin1 OS=Rhizop... [more]
PIN1_MACFA2.432e-2449.56Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN1_HUMAN2.432e-2449.56Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN1_BOVIN2.432e-2449.56Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN1_MOUSE7.076e-2448.67Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
SSP1_NEUCR4.586e-2349.11Peptidyl-prolyl cis-trans isomerase ssp-1 OS=Neuro... [more]

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Properties
Property NameValue
Genbank descriptionC34105B08EF PostHarvP1 Citrus clementina cDNA clone C34105B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931443 ID=FC931443; Name=FC931443; organism=Citrus clementina; type=EST; length=730bp
GATAGCGAAAAGTGGCAGCAGCGAAAATAGAGTCAGATCGAAAGAGAAAG
AATAGTTCGATCTCATCCGCAGATCGAAGGCCAACAACAAACGACAAGGA
AAGAGATAAGAGTAGTCACAAGAAGAAACCAAAAATGTCGTCGGCCAATC
AGGTGAGGGCATCTCACATCTTGATCAAGCATCAAGGTTCTCGAAGGAAG
GCTTCGTGGAAGGATCCGGAAGGTAGAGTCATCAGCAACACCACTAGAGA
GAGCGCCGTCTCTCAACTCCAAGCCATCCGAGACGACATCGTTTCCGGCA
AGGCCAAGTTCGATGAAGTCGCCTCTCGCCTCTCCGATTGCAGCTCCGCC
AAACGCGGCGGTGATCTCGGTAATTTTGGTCGAGGCCAGATGCAGAAGCC
TTTTGAGGAAGCAACATATAATCTTAAAATTGGTGAGATAAGTGAAGTTG
TGGATACTGATAGCGGGGTTCACCTTATCATGAGGACTGGTTGATTATTA
ATGATAAGCTCATAATGGATTAACTGATTTGTTCAGTATATTCTGGAAAC
ATATTCAAGAATGTTGTCGTTGGTTTTACTTCAGATGAATGTTGGTCTTC
TTATGATAATGCTGGCGAGCCATGCTATATTTGGCTCGTTGGAATTGTTT
TCTTAAGCATGTAGTTTATACATGGCTGATTGTGGTTTGGGATTTGCTTG
ATGACTCCAAAATACACCTCGTTGGTTCTT
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