FC931446

Overview
NameFC931446
Unique NameFC931446
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931446_ssr454 microsatellite FC931446_ssr454:454..463. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931446_ssr477 microsatellite FC931446_ssr477:477..494. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931446_ssr495 microsatellite FC931446_ssr495:495..534. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931446_ssr466 microsatellite FC931446_ssr466:466..477. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931446_ssr478 microsatellite FC931446_ssr478:478..493. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931446_ssr494 microsatellite FC931446_ssr494:494..533. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC931446 vs. ExPASy Swiss-Prot
Match: SNAK1_SOLTU (Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.078e-29
Identity = 53/68 (77.94%), Postives = 59/68 (86.76%), Query Frame = 3
Query:  153 EVSMAGSDFCDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP 356
            + +MAGS FCDSKC +RCSKAG  DRCLKYCGICC++C CVPSGTYG+K ECPCYRD KNSKGK KCP
Sbjct:   21 QTTMAGSSFCDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHECPCYRDKKNSKGKSKCP 88          
BLAST of FC931446 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.512e-15
Identity = 31/59 (52.54%), Postives = 38/59 (64.41%), Query Frame = 3
Query:  180 CDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP 356
            C  KC  RCSK   +  C+ +C  CC KC CVP+GTYG+K  CPCY + K  +G PKCP
Sbjct:   54 CQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112          
BLAST of FC931446 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.352e-14
Identity = 28/59 (47.46%), Postives = 35/59 (59.32%), Query Frame = 3
Query:  180 CDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP 356
            C  +C  RCS    +  C+ +C  CC  C CVP G YG+K  CPCY + K  +GKPKCP
Sbjct:   38 CKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96          
BLAST of FC931446 vs. ExPASy Swiss-Prot
Match: GASA4_ARATH (Gibberellin-regulated protein 4 OS=Arabidopsis thaliana GN=GASA4 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12
Identity = 28/59 (47.46%), Postives = 34/59 (57.63%), Query Frame = 3
Query:  180 CDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP 356
            C S+C  RC K      C+ +C  CC KC CVP G YG+K  C CY + K  +G PKCP
Sbjct:   48 CPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106          
BLAST of FC931446 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.043e-12
Identity = 28/59 (47.46%), Postives = 35/59 (59.32%), Query Frame = 3
Query:  180 CDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP 356
            C S C  RC  + R   C + CG CC +C+CVP GTYG+ D+C CY  L    G+ KCP
Sbjct:   40 CGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98          
BLAST of FC931446 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 27/59 (45.76%), Postives = 35/59 (59.32%), Query Frame = 3
Query:  180 CDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP 356
            C  +C  RCSK+ R   CL+ C  CC +C+CVP GT G+   CPCY  +    G+ KCP
Sbjct:   41 CGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99          
BLAST of FC931446 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 27/59 (45.76%), Postives = 36/59 (61.02%), Query Frame = 3
Query:  180 CDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP 356
            C  +C  RCSK+ R + CL+ C  CC +C+CVP GT G+   CPCY  +    G+ KCP
Sbjct:   41 CGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99          
BLAST of FC931446 vs. ExPASy Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 27/59 (45.76%), Postives = 33/59 (55.93%), Query Frame = 3
Query:  180 CDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP 356
            C   CA RC  + R   C + CG CC +C+CVP GT G+ + CPCY  L     K KCP
Sbjct:   46 CGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104          
The following BLAST results are available for this feature:
BLAST of FC931446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SNAK1_SOLTU1.078e-2977.94Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1[more]
GAST1_SOLLC1.512e-1552.54Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
RSI1_SOLLC6.352e-1447.46Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
GASA4_ARATH1.565e-1247.46Gibberellin-regulated protein 4 OS=Arabidopsis tha... [more]
GASA1_ARATH2.043e-1247.46Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
GASA2_ARATH2.669e-1245.76Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
GASA3_ARATH3.485e-1245.76Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
SNAK2_SOLTU1.014e-1145.76Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC34105B11EF PostHarvP1 Citrus clementina cDNA clone C34105B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931446 ID=FC931446; Name=FC931446; organism=Citrus clementina; type=EST; length=617bp
GAACAACGATCCATAAGCAAAGCATTACCGATTCTTTGGCTCTCTTTTTG
ATTAGCAAATTAACTACTCTTCTTCAGGAAATTCTGAGAAAAATGAAGCT
GGCCTTGGTTACATTCCTTCTCGTTTCTCTTGTCGTCACCTCCACTTTCT
TTGAGGTCTCGATGGCTGGTTCAGATTTCTGCGACTCAAAGTGTGCGGTG
AGGTGCTCAAAAGCAGGAAGGGAAGACAGGTGCCTGAAGTACTGTGGAAT
TTGCTGTGACAAGTGCCATTGTGTTCCATCTGGGACTTACGGGCACAAGG
ACGAGTGCCCTTGCTACAGGGACCTCAAGAACTCCAAGGGCAAACCTAAG
TGTCCTTAAAATTACATTCTCTTTTCTTTATAAAGGACCCCTTCAAAGTT
TGTTTATATGTAATTAAAATTAATTATCACCTTTTAACCATATTGTATTA
GCCATATATATATACATGTATGTATGTATATATATATATATATAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTTGCACATGCAGCTT
GTAGAGAATACTAAGGTCATAAAAAATTAAATGGAATTACTAAAGGGAAT
AATGACTTGNGTCAAAA
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