FC931447

Overview
NameFC931447
Unique NameFC931447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length398
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6 contig Ccv1_Contig6:118..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931447 vs. ExPASy Swiss-Prot
Match: FTSH1_ORYSJ (Cell division protease ftsH homolog 1, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH1 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.516e-45
Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 1
Query:    1 GFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELFVA 288
            GFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVE AY+RA QIITTHIDILHKLAQLL+EKETVDGEEFMSLFIDG+AELFVA
Sbjct:  591 GFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVEKAYSRATQIITTHIDILHKLAQLLMEKETVDGEEFMSLFIDGQAELFVA 686          
BLAST of FC931447 vs. ExPASy Swiss-Prot
Match: FTSH1_ARATH (Cell division protease ftsH homolog 1, chloroplastic OS=Arabidopsis thaliana GN=FTSH1 PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 1.131e-43
Identity = 85/96 (88.54%), Postives = 93/96 (96.88%), Query Frame = 1
Query:    1 GFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELFVA 288
            GFSKKIGQVA+GGPGGNPF+GQQMSSQKDYSMATAD+VDAEVRELVE AY RA +IITTHIDILHKLAQLLIEKETVDGEEFMSLFIDG+AEL+++
Sbjct:  621 GFSKKIGQVAVGGPGGNPFMGQQMSSQKDYSMATADIVDAEVRELVEKAYKRATEIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGQAELYIS 716          
BLAST of FC931447 vs. ExPASy Swiss-Prot
Match: FTSH_TOBAC (Cell division protease ftsH homolog, chloroplastic OS=Nicotiana tabacum GN=FTSH PE=2 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 3.291e-43
Identity = 87/96 (90.62%), Postives = 92/96 (95.83%), Query Frame = 1
Query:    1 GFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELFVA 288
            GFSKKIGQVAIGG GGNPFLGQQMS+QKDYSMATADVVDAEVRELVE AY RA +IITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAEL+++
Sbjct:  612 GFSKKIGQVAIGGGGGNPFLGQQMSTQKDYSMATADVVDAEVRELVERAYERATEIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELYIS 707          
BLAST of FC931447 vs. ExPASy Swiss-Prot
Match: FTSH5_ARATH (Cell division protease ftsH homolog 5, chloroplastic OS=Arabidopsis thaliana GN=FTSH5 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.633e-42
Identity = 86/96 (89.58%), Postives = 91/96 (94.79%), Query Frame = 1
Query:    1 GFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELFVA 288
            GFSKKIGQVA+GG GGNPFLGQ MSSQKDYSMATADVVDAEVRELVE AY RAK+IITT IDILHKLAQLLIEKETVDGEEFMSLFIDG+AEL+V+
Sbjct:  609 GFSKKIGQVAVGGAGGNPFLGQSMSSQKDYSMATADVVDAEVRELVEKAYVRAKEIITTQIDILHKLAQLLIEKETVDGEEFMSLFIDGQAELYVS 704          
BLAST of FC931447 vs. ExPASy Swiss-Prot
Match: FTSH_MEDSA (Cell division protease ftsH homolog, chloroplastic OS=Medicago sativa GN=FTSH PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.133e-42
Identity = 86/96 (89.58%), Postives = 90/96 (93.75%), Query Frame = 1
Query:    1 GFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELFVA 288
            GFSKKIGQVAIGG GGNPFLGQQMSSQKDYSMATAD+VD EVRELV+ AY RA QII THIDILHKLAQLLIEKETVDGEEFMSLFIDGKAEL+V+
Sbjct:  611 GFSKKIGQVAIGGGGGNPFLGQQMSSQKDYSMATADIVDKEVRELVDKAYERATQIINTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELYVS 706          
BLAST of FC931447 vs. ExPASy Swiss-Prot
Match: FTSH_CAPAN (Cell division protease ftsH homolog, chloroplastic (Fragment) OS=Capsicum annuum GN=FTSH PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.458e-32
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 1
Query:    1 GFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEK 222
            GFSKKIGQVAIGG GGNPFLGQQMS+QKDYSMATADVVD+EVRELVE AY RAKQIITTHIDILHKLAQLLIEK
Sbjct:  589 GFSKKIGQVAIGGGGGNPFLGQQMSTQKDYSMATADVVDSEVRELVEKAYERAKQIITTHIDILHKLAQLLIEK 662          
BLAST of FC931447 vs. ExPASy Swiss-Prot
Match: FTSH4_SYNY3 (Cell division protease ftsH homolog 4 OS=Synechocystis sp. (strain PCC 6803) GN=slr1604 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.250e-18
Identity = 43/93 (46.24%), Postives = 64/93 (68.82%), Query Frame = 1
Query:    1 GFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAEL 279
            G S ++G VA+G  GG  FLG+ ++S +D+S  TA  +D EV +LV+ AY RAKQ++  +  IL +LA++L+EKETVD EE  +L  +  A+L
Sbjct:  520 GMSDRLGPVALGRQGGGVFLGRDIASDRDFSDETAAAIDEEVSQLVDQAYQRAKQVLVENRGILDQLAEILVEKETVDSEELQTLLANNNAKL 612          
BLAST of FC931447 vs. ExPASy Swiss-Prot
Match: FTSH_MYCTU (Cell division protease ftsH homolog OS=Mycobacterium tuberculosis GN=ftsH PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.792e-15
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    1 GFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFID 264
            G S K+G V  G   G+PFLG+ M +Q DYS   A  +D EVR+L+E A+T A +I+T + D+L  LA  L+EKET+   E  S+F D
Sbjct:  517 GMSSKLGAVKYGSEHGDPFLGRTMGTQPDYSHEVAREIDEEVRKLIEAAHTEAWEILTEYRDVLDTLAGELLEKETLHRPELESIFAD 604          
BLAST of FC931447 vs. ExPASy Swiss-Prot
Match: FTSH_MYCTA (Cell division protease ftsH homolog OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ftsH PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.792e-15
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    1 GFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFID 264
            G S K+G V  G   G+PFLG+ M +Q DYS   A  +D EVR+L+E A+T A +I+T + D+L  LA  L+EKET+   E  S+F D
Sbjct:  517 GMSSKLGAVKYGSEHGDPFLGRTMGTQPDYSHEVAREIDEEVRKLIEAAHTEAWEILTEYRDVLDTLAGELLEKETLHRPELESIFAD 604          
BLAST of FC931447 vs. ExPASy Swiss-Prot
Match: FTSH_MYCBO (Cell division protease ftsH homolog OS=Mycobacterium bovis GN=ftsH PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.792e-15
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    1 GFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFID 264
            G S K+G V  G   G+PFLG+ M +Q DYS   A  +D EVR+L+E A+T A +I+T + D+L  LA  L+EKET+   E  S+F D
Sbjct:  517 GMSSKLGAVKYGSEHGDPFLGRTMGTQPDYSHEVAREIDEEVRKLIEAAHTEAWEILTEYRDVLDTLAGELLEKETLHRPELESIFAD 604          
The following BLAST results are available for this feature:
BLAST of FC931447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
FTSH1_ORYSJ3.516e-4594.79Cell division protease ftsH homolog 1, chloroplast... [more]
FTSH1_ARATH1.131e-4388.54Cell division protease ftsH homolog 1, chloroplast... [more]
FTSH_TOBAC3.291e-4390.63Cell division protease ftsH homolog, chloroplastic... [more]
FTSH5_ARATH1.633e-4289.58Cell division protease ftsH homolog 5, chloroplast... [more]
FTSH_MEDSA2.133e-4289.58Cell division protease ftsH homolog, chloroplastic... [more]
FTSH_CAPAN4.458e-3293.24Cell division protease ftsH homolog, chloroplastic... [more]
FTSH4_SYNY36.250e-1846.24Cell division protease ftsH homolog 4 OS=Synechocy... [more]
FTSH_MYCTU3.792e-1546.59Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_MYCTA3.792e-1546.59Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_MYCBO3.792e-1546.59Cell division protease ftsH homolog OS=Mycobacteri... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34105B12EF PostHarvP1 Citrus clementina cDNA clone C34105B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931447 ID=FC931447; Name=FC931447; organism=Citrus clementina; type=EST; length=398bp
GGGTTTAGCAAGAAAATTGGACAAGTTGCCATTGGAGGACCTGGTGGAAA
TCCATTCTTGGGTCAACAAATGTCTTCTCAGAAAGACTACTCCATGGCAA
CTGCCGATGTGGTGGATGCAGAGGTCAGAGAATTGGTTGAAACAGCATAT
ACAAGGGCCAAGCAGATCATCACAACCCACATTGACATCCTTCACAAGCT
TGCTCAACTCCTCATAGAGAAAGAAACCGTTGATGGAGAAGAATTTATGA
GCCTTTTCATTGATGGAAAAGCTGAGCTATTTGTTGCCTGATTGTACATG
AAAGAATCAGAATTCAGATTCGTGTTGTATATGCCCATGTAAAATCAAGT
AATTAAATTATCATTTTAGCNAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top