FC931448

Overview
NameFC931448
Unique NameFC931448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931448_ssr539 microsatellite FC931448_ssr539:539..550. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15328 contig Ccv1_Contig15328:1..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931448 vs. ExPASy Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.622e-13
Identity = 47/95 (49.47%), Postives = 54/95 (56.84%), Query Frame = 2 
Query:  113 MATEDPVVDTETLPQPESPEPV------VEDKPSSKAGKGKTSKEXXXXXXXXXXXXXXXXXXXXYEEMIKDAIVTLKEKTGSSQYAIAKFIEEK 379
            MATE+P+V  ET+P+P   EP       V +K   KA   KT K+                    YEEMIKDAIV+LKEK GSSQYAIAKFIEEK
Sbjct:    1 MATEEPIVAVETVPEPIVTEPTTITEPEVPEKEEPKAEVEKT-KKAKGSKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEK 94
[Close]
BLAST of FC931448 vs. ExPASy Swiss-Prot
Match: H1_SOLLC (Histone H1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 42/89 (47.19%), Postives = 52/89 (58.43%), Query Frame = 2 
Query:  113 MATEDPVVDTETLPQPESPEPVVEDKPSSKAGKGKTSKEXXXXXXXXXXXXXXXXXXXXYEEMIKDAIVTLKEKTGSSQYAIAKFIEEK 379
            MATE+PV+  E + +  +PE  V+D+ +  A  GK  KE                    Y EMIKDAIVTLKE+TGSSQ+AI KFIEEK
Sbjct:    1 MATEEPVIVNEVVEEQAAPE-TVKDEANPPAKSGKAKKETKAKKPAAPRKRSATPTHPPYFEMIKDAIVTLKERTGSSQHAITKFIEEK 88
The following BLAST results are available for this feature:
BLAST of FC931448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
H1_PEA6.622e-1349.47Histone H1 OS=Pisum sativum PE=2 SV=1[more]
H1_SOLLC1.927e-1247.19Histone H1 OS=Solanum lycopersicum PE=3 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC34105C01EF PostHarvP1 Citrus clementina cDNA clone C34105C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931448 ID=FC931448; Name=FC931448; organism=Citrus clementina; type=EST; length=687bp
GGCACAAACGAAAATACTAGTCCTCCACCACCCGCATTTTTAGATCCAAT
CTTTCATTATCTTTCTTGCTCGCTCTCCACTTCCTAATTTCTGAAACCCA
ATTCGATTCAAAATGGCCACTGAAGATCCCGTTGTAGATACGGAGACCCT
TCCCCAACCGGAATCCCCTGAACCGGTGGTAGAGGACAAACCGTCCTCCA
AGGCCGGCAAAGGCAAGACCTCTAAGGAGCCCAAAGCCAAGAAAGCCGCT
GCTCCGAGGAAGCCTAGAAGCCCTCCCTCTCATCCTCCTTATGAAGAGAT
GATTAAGGATGCAATTGTTACTTTGAAAGAGAAGACGGGTTCGAGTCAGT
ATGCAATTGCCAAGTTTATTGAGGAGAAGCACAAGCAGTTGCCACCCAAC
TTTAAGAAGCTGTTGCTGTTTCATTTGAAGAAGCTTGTGGGTTCTGGAAA
GCTCGTGAAGGTTAAGGGTTCCTTCAAGCTTCCATCTGCTAGGGCTGCCG
TTTCTAAGCCGGCTGCATCTGTTCCTGCTTCTCCGGCTAAGAAGAAGAAG
CCGGTTGCTGCTGGTAAGGCCAAAACTAAGGCGGTGCCCTCCAAGGCCAA
AGCCCCACCTAAGGCTAAGGCCAAGGCACCAGCTAAAGCTCCCGCCCAGG
CNTAGCCAGCTGCTAAAACCCAAGCCAGCCGGCTGCC
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