FC931455

Overview
NameFC931455
Unique NameFC931455
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15330 contig Ccv1_Contig15330:1..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931455 vs. ExPASy Swiss-Prot
Match: P4HA1_CAEEL (Prolyl 4-hydroxylase subunit alpha-1 OS=Caenorhabditis elegans GN=dpy-18 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.921e-15
Identity = 47/135 (34.81%), Postives = 75/135 (55.56%), Query Frame = 1
Query:  322 FDPSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLEKSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFR---DKMKSQLG-GHRIATVXMYL 714
            + P +V    +NP A ++K  +SD+E   + +LAK KL ++ V D+ +GK + +  R S   +L + + ++V ++  RI   T L  E  E +QI +Y  G  Y+PHFD  +    K    LG G+RIATV  Y+
Sbjct:  316 YAPIKVEIKRFNPLAVLFKDVISDDEVAAIQELAKPKLARATVHDSVTGKLVTATYRISKSAWLKEWEGDVVETVNKRIGYMTNLEMETAEELQIANYGIGGHYDPHFDHAKKEESKSFESLGTGNRIATVLFYM 450          
BLAST of FC931455 vs. ExPASy Swiss-Prot
Match: P4HA1_RAT (Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.399e-14
Identity = 45/123 (36.59%), Postives = 66/123 (53.66%), Query Frame = 1
Query:  358 PRAFIYKGFLSDEECDHLIDLAKDKLEKSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFR----DKMKSQLGGHRIATVXMYL 714
            PR   +   +SD E + + DLAK +L ++ V D E+GK   ++ R S   +LS  +D +V+ I  RI   T L     E +Q+ +Y  G +YEPHFDF R    D  +    G+RIAT   Y+
Sbjct:  335 PRIIRFHDIISDAEIEIVKDLAKPRLSRATVHDPETGKLTTAQYRVSKSAWLSGYEDPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFRELGTGNRIATWLFYM 457          
BLAST of FC931455 vs. ExPASy Swiss-Prot
Match: P4HA1_CHICK (Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.444e-13
Identity = 45/123 (36.59%), Postives = 65/123 (52.85%), Query Frame = 1
Query:  358 PRAFIYKGFLSDEECDHLIDLAKDKLEKSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFR----DKMKSQLGGHRIATVXMYL 714
            PR   +   +SDEE + + +LAK +L ++ V D E+GK   +  R S   +LS  +  +V+ I  RI   T L     E +Q+ +Y  G +YEPHFDF R    D  K    G+RIAT   Y+
Sbjct:  317 PRIVRFLDIISDEEIETVKELAKPRLSRATVHDPETGKLTTAHYRVSKSAWLSGYESPVVSRINTRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFGRKDEPDAFKELGTGNRIATWLFYM 439          
BLAST of FC931455 vs. ExPASy Swiss-Prot
Match: P4HA2_CHICK (Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.286e-13
Identity = 42/122 (34.43%), Postives = 64/122 (52.46%), Query Frame = 1
Query:  355 NPRAFIYKGFLSDEECDHLIDLAKDKLEKSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMKSQL--GGHRIATVXMYL 714
            +P    Y   +SDEE + +  LAK KL ++ V D ++G    +  R S   +L +  D +VA +  R+   T L  +  E +Q+ +Y  G +YEPHFDF R    S L   G+R+AT   Y+
Sbjct:  336 SPHIVRYYDVMSDEEIEKIKQLAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVAKVNQRMQQITGLTVKTAELLQVANYGMGGQYEPHFDFSRRPFDSTLKSEGNRLATFLNYM 457          
BLAST of FC931455 vs. ExPASy Swiss-Prot
Match: P4HA3_RAT (Prolyl 4-hydroxylase subunit alpha-3 OS=Rattus norvegicus GN=P4ha3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 49/137 (35.77%), Postives = 73/137 (53.28%), Query Frame = 1
Query:  328 PSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLEKSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFL--PPENGEAMQILHYEHGQKYEPHFDFFRD------KMKSQLGGHRIATVXMYL 714
            P+R   +   P   +Y  F+SDEE   + +LA+  L++S+VA  E  K +  E R S   +L    D ++ +++ RIAA T L   P   E +Q+++Y  G  YEPHFD          KMKS   G+R AT+ +YL
Sbjct:  336 PARKEVIHLRPLVALYHDFVSDEEAQKIRELAEPWLQRSVVASGE--KQLQVEYRISKSAWLKDTVDPVLVTLDRRIAALTGLDIQPPYAEYLQVVNYGIGGHYEPHFDHATSPSSPLYKMKS---GNRAATLMIYL 467          
BLAST of FC931455 vs. ExPASy Swiss-Prot
Match: P4HA2_MOUSE (Prolyl 4-hydroxylase subunit alpha-2 OS=Mus musculus GN=P4ha2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 41/124 (33.06%), Postives = 65/124 (52.42%), Query Frame = 1
Query:  355 NPRAFIYKGFLSDEECDHLIDLAKDKLEKSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFR----DKMKSQLGGHRIATVXMYL 714
            +P    Y   +SDEE + + ++AK KL ++ V D ++G    +  R S   +L +  D +VA +  R+   T L  +  E +Q+ +Y  G +YEPHFDF R    D  K    G+R+AT   Y+
Sbjct:  337 SPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKTAELLQVANYGMGGQYEPHFDFSRSDDEDAFKRLGTGNRVATFLNYM 460          
BLAST of FC931455 vs. ExPASy Swiss-Prot
Match: P4HA2_HUMAN (Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 41/124 (33.06%), Postives = 65/124 (52.42%), Query Frame = 1
Query:  355 NPRAFIYKGFLSDEECDHLIDLAKDKLEKSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFF----RDKMKSQLGGHRIATVXMYL 714
            +P    Y   +SDEE + + ++AK KL ++ V D ++G    +  R S   +L +  D +VA +  R+   T L  +  E +Q+ +Y  G +YEPHFDF     RD  K    G+R+AT   Y+
Sbjct:  335 SPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKTAELLQVANYGVGGQYEPHFDFSRNDERDTFKHLGTGNRVATFLNYM 458          
BLAST of FC931455 vs. ExPASy Swiss-Prot
Match: P4HA2_CAEEL (Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans GN=phy-2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 41/133 (30.83%), Postives = 72/133 (54.14%), Query Frame = 1
Query:  328 PSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLEKSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMKSQL----GGHRIATVXMYL 714
            P +V  L ++P A ++K  + D E + + +LA  KL+++ V ++++G+   +  R S   +L    D ++  +  RI  +T L     E +Q+ +Y  G  Y+PHFDF R + K+       G+RIATV  Y+
Sbjct:  315 PIKVEILRFDPLAVLFKNVIHDSEIEVIKELASPKLKRATVQNSKTGELEHATYRISKSAWLKGDLDPVIDRVNRRIEDFTNLNQATSEELQVANYGLGGHYDPHFDFARKEEKNAFKTLNTGNRIATVLFYM 447          
BLAST of FC931455 vs. ExPASy Swiss-Prot
Match: P4HA3_MOUSE (Prolyl 4-hydroxylase subunit alpha-3 OS=Mus musculus GN=P4ha3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.861e-12
Identity = 48/137 (35.04%), Postives = 73/137 (53.28%), Query Frame = 1
Query:  328 PSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLEKSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFL--PPENGEAMQILHYEHGQKYEPHFDFFRD------KMKSQLGGHRIATVXMYL 714
            P+R   +   P   +Y  F+SDEE   + +LA+  L++S+VA  E  K +  E R S   +L    D ++ +++ RIAA T L   P   E +Q+++Y  G  YEPHFD          +MKS   G+R+AT  +YL
Sbjct:  334 PARKEVVHLRPLIALYHDFVSDEEAQKIRELAEPWLQRSVVASGE--KQLQVEYRISKSAWLKDTVDPMLVTLDHRIAALTGLDIQPPYAEYLQVVNYGIGGHYEPHFDHATSPSSPLYRMKS---GNRVATFMIYL 465          
BLAST of FC931455 vs. ExPASy Swiss-Prot
Match: P4HA1_MOUSE (Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 41/123 (33.33%), Postives = 63/123 (51.22%), Query Frame = 1
Query:  358 PRAFIYKGFLSDEECDHLIDLAKDKLEKSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFR----DKMKSQLGGHRIATVXMYL 714
            PR   +   +SD E + + DLAK +L ++ +++  +G       R S   +LS  +D +V+ I  RI   T L     E +Q+ +Y  G +YEPHFDF R    D  +    G+RIAT   Y+
Sbjct:  335 PRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPVTGALETVHYRISKSAWLSGYEDPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFRELGTGNRIATWLFYM 457          
The following BLAST results are available for this feature:
BLAST of FC931455 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
P4HA1_CAEEL9.921e-1534.81Prolyl 4-hydroxylase subunit alpha-1 OS=Caenorhabd... [more]
P4HA1_RAT8.399e-1436.59Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus nor... [more]
P4HA1_CHICK2.444e-1336.59Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gal... [more]
P4HA2_CHICK9.286e-1334.43Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gal... [more]
P4HA3_RAT1.584e-1235.77Prolyl 4-hydroxylase subunit alpha-3 OS=Rattus nor... [more]
P4HA2_MOUSE1.584e-1233.06Prolyl 4-hydroxylase subunit alpha-2 OS=Mus muscul... [more]
P4HA2_HUMAN2.069e-1233.06Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapie... [more]
P4HA2_CAEEL2.069e-1230.83Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabd... [more]
P4HA3_MOUSE7.861e-1235.04Prolyl 4-hydroxylase subunit alpha-3 OS=Mus muscul... [more]
P4HA1_MOUSE5.095e-1133.33Prolyl 4-hydroxylase subunit alpha-1 OS=Mus muscul... [more]
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Properties
Property NameValue
Genbank descriptionC34105C08EF PostHarvP1 Citrus clementina cDNA clone C34105C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931455 ID=FC931455; Name=FC931455; organism=Citrus clementina; type=EST; length=716bp
GGAACAATAAAAAAAAAAGTGTTATTGAAAGAAAAATTCCACGCGGAAGA
GAAGAAAGACTGTTCTCCAAAAACCAAAACCACACACATAGCACGTTGAA
CTGAAAATAAAATCACAGCTGAAACAAACCCCCATTTCATCATTTTTGTT
TTCTTCGAAATCAAAAACAGATTTTTCCAAATGGGTGCTTGTTATTTTCT
TGCACTTTCTCTTTGTTTCCTCCTTATTTTCCCTGATCCATCTGGCTCTG
TCAAGGTTCCCGGTTGGCTCAGCGACAAAGAAAAAAAGACATCGGTGCTG
AGGTTGAAGACGAGTACTACGTTTGATCCTTCACGTGTAACTCAGCTTTC
ATGGAATCCCAGGGCTTTTATATATAAAGGGTTTTTGTCAGATGAGGAGT
GTGATCATCTTATTGATCTGGCAAAGGACAAGCTTGAGAAGTCAATGGTT
GCTGATAATGAATCTGGGAAGAGTATAGCGAGTGAAGTTCGAACGAGTTC
TGGCATGTTTCTTAGCAAAGCTCAGGATGAGATAGTAGCCAGTATTGAGG
CCAGGATCGCTGCATGGACTTTTCTTCCACCAGAAAATGGGGAAGCCATG
CAAATACTGCACTATGAGCATGGTCAAAAGTATGAGCCACATTTTGATTT
TTTTCGCGACAAAATGAAATCACAGCTAGGTGGTCATCGAATTGCTACAG
TGNTAATGTATTTGTC
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