FC931460

Overview
NameFC931460
Unique NameFC931460
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length799
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12505 contig Ccv1_Contig12505:65..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931460 vs. ExPASy Swiss-Prot
Match: Y3236_ARATH (Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 7.862e-70
Identity = 131/196 (66.84%), Postives = 153/196 (78.06%), Query Frame = 3
Query:   93 ASSIVEGAERDLEKGIISPQLSQKSIGEXXXXXXXXXXXXXXXXXXXXLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVLNELLKYSTKEGLTRKNRSGFDPLHIAAVKGHHAIVQVLLDHDPSLSQTTGPS 680
            ASS V+G ERD+EKG +    S ++                       LSNSGKR+DQAGKKKYVKQVTGRHNDTELHLAAQRGDL AV+QIL  I+SQM G LSG EFD EVAEIR+S+VNEVNELGETALFTAADKGH++V+ ELLKYS++E + +KNRSG+DPLHIAA++GHHAIV+VLLDHD +LSQT GPS
Sbjct:    3 ASSYVDG-ERDMEKGGMILLQSSENQNPMIDPSPTPSPSATATAPALVLSNSGKRMDQAGKKKYVKQVTGRHNDTELHLAAQRGDLAAVQQILKDINSQMEGILSGEEFDAEVAEIRASIVNEVNELGETALFTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAIVEVLLDHDATLSQTFGPS 197          

HSP 2 Score: 36.5798 bits (83), Expect = 7.862e-70
Identity = 17/20 (85.00%), Postives = 17/20 (85.00%), Query Frame = 2
Query:  674 PFNATPLVSAATRGHTAVVN 733
            P NATPLVSAA RGHT VVN
Sbjct:  196 PSNATPLVSAAMRGHTEVVN 215          
BLAST of FC931460 vs. ExPASy Swiss-Prot
Match: Y5262_ARATH (Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.142e-12
Identity = 45/132 (34.09%), Postives = 69/132 (52.27%), Query Frame = 3
Query:  273 KKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVLNELLKYSTKEGLTRKNRSGFDPLHIAAVKGHHAIVQVLLDHDPSLSQT 668
            KK   KQ+T R +DT LH A + G    + +        M+G   G E    +AE         N+ GETAL+ AA+ G+ +++  L+K+S       K ++GFD  HIAA  G+  ++ VL++ +P LS T
Sbjct:    5 KKTMTKQMTARRDDTPLHTAVREGKTDLLLE--------MIGEHDGVELKELLAE--------QNQSGETALYVAAEYGYTDMVKILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFT 120          

HSP 2 Score: 20.7866 bits (42), Expect = 1.142e-12
Identity = 9/15 (60.00%), Postives = 10/15 (66.67%), Query Frame = 2
Query:  686 TPLVSAATRGHTAVV 730
            T L SAA  GHT +V
Sbjct:  161 TALHSAARNGHTVIV 175          
The following BLAST results are available for this feature:
BLAST of FC931460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y3236_ARATH7.862e-7066.84Ankyrin repeat-containing protein At3g12360 OS=Ara... [more]
Y5262_ARATH1.142e-1234.09Ankyrin repeat-containing protein At5g02620 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionC34105D02EF PostHarvP1 Citrus clementina cDNA clone C34105D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931460 ID=FC931460; Name=FC931460; organism=Citrus clementina; type=EST; length=799bp
ATCTCCCTCTCACTCTTACACTTCTCTTGAACCTTCTCATTTCTCTTCTA
TCTTGAATGATATCTAAATTTTTCTCTTTCTAATCAACCATGGCCTCATC
TATTGTAGAAGGAGCTGAGAGAGACCTTGAAAAGGGAATAATATCTCCAC
AATTAAGCCAAAAATCAATTGGTGAGTCATCACTAACACCGTCACCTTCC
CCTTCACCGTCTTCAGCAACAGCACCGGTTTTGGTGTTGTCCAACTCAGG
CAAACGCATAGACCAAGCTGGGAAAAAGAAGTATGTTAAACAAGTGACGG
GTCGTCATAATGATACGGAGCTGCATTTGGCAGCTCAGCGAGGAGATTTG
GGGGCAGTGAAACAGATTCTTTATGGCATAGATTCACAAATGGTGGGGAA
CTTAAGTGGGGCTGAATTTGATACTGAAGTTGCAGAGATAAGGTCATCGG
TTGTGAATGAGGTGAATGAGTTGGGAGAGACTGCCTTATTTACAGCTGCA
GATAAAGGGCATATTGAGGTTCTTAATGAGCTGTTGAAGTATTCGACCAA
AGAAGGTCTTACAAGGAAGAATCGGTCCGGGTTTGATCCATTGCATATTG
CTGCAGTCAAAGGGCATCATGCCATTGTCCAAGTGTTACTTGATCATGAT
CCCAGCTTAAGCCAAACAACCGGCCCTTCAATGCAACTCCTCTTGTATCT
GCTGCTACTAGGGGGCATACGGCTGTTGTCAATGACTATTATCAAGGATG
GTGGCTGTTAGAAATTCTAGATCCATGGGAAAATGCATGCATTTGCTGC
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