FC931462

Overview
NameFC931462
Unique NameFC931462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12725 contig Ccv1_Contig12725:96..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 299.286 bits (765), Expect = 1.299e-80
Identity = 144/171 (84.21%), Postives = 156/171 (91.23%), Query Frame = 1
Query:  157 MEGKEEDVRVGANRYRESQPIGTAAQTQDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGAHMLS 669
            MEGKEEDVR+GAN++ E QPIGTAAQ  D KDY EPPPAPLFEPGEL SWSFYRAGIAEF+ATFLFLYITVLTVMGV+ S SKC TVGIQGIAW+FGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRA+FYM+MQCLGAICGA VVKGFQK  YE  GGGA++++
Sbjct:    1 MEGKEEDVRLGANKFSERQPIGTAAQGSDDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVNNSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQKGLYETTGGGANVVA 171          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.449e-79
Identity = 145/172 (84.30%), Postives = 156/172 (90.70%), Query Frame = 1
Query:  157 MEGKEEDVRVGANRYRESQPIGTAAQ-TQDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGAHMLS 669
            MEGKEEDVR+GANRY E QPIGTAAQ   D KDY EPPPAPLFEPGEL SWSFYRAGIAEFVATFLFLYIT+LTVMGVSKS SKC TVGIQGIAW+FGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRA+FY++MQCLGAICGA VVKGFQ+  Y   GGGA++++
Sbjct:    1 MEGKEEDVRLGANRYSERQPIGTAAQGAGDDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGVSKSSSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQQGLYMGNGGGANVVA 172          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 5.456e-79
Identity = 143/171 (83.63%), Postives = 157/171 (91.81%), Query Frame = 1
Query:  157 MEGKEEDVRVGANRYRESQPIGTAAQTQDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGAHMLS 669
            MEGKEEDVRVGAN++ E QPIGT+AQ+ D KDY EPPPAPLFEPGELSSWSFYRAGIAEF+ATFLFLYITVLTVMGV ++ + C +VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGA VVKGFQ + Y+ LGGGA+ ++
Sbjct:    1 MEGKEEDVRVGANKFPERQPIGTSAQSTD-KDYKEPPPAPLFEPGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKRAPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAGVVKGFQPTPYQTLGGGANTVA 170          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 2.708e-78
Identity = 142/171 (83.04%), Postives = 154/171 (90.06%), Query Frame = 1
Query:  157 MEGKEEDVRVGANRYRESQPIGTAAQTQDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGAHMLS 669
            MEGKEEDVR+GANRY E QPIGTAAQ  + KDY EPPPAPLFE  EL+SWSFYRAGIAEFVATFLFLYI++LTVMGVSKS SKC TVGIQGIAW+FGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRA+FYM+MQCLGAICGA VVKGFQ+  Y   GGGA+ ++
Sbjct:    1 MEGKEEDVRLGANRYSERQPIGTAAQGTEEKDYKEPPPAPLFEAEELTSWSFYRAGIAEFVATFLFLYISILTVMGVSKSSSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQEGLYMGAGGGANAVN 171          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 2.708e-78
Identity = 145/175 (82.86%), Postives = 156/175 (89.14%), Query Frame = 1
Query:  157 MEGKEEDVRVGANRYRESQPIGTAAQT----QDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGAHMLS 669
            MEGKEEDVR+GAN++ E QPIGTAAQ      D KDY EPPPAPLFEPGEL SWSFYRAGIAEFVATFLFLYITVLTVMGVSKS SKC TVGIQGIAW+FGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRA+FY+IMQCLGAICGA VVKGFQ+  Y   GGGA++++
Sbjct:    1 MEGKEEDVRLGANKFSERQPIGTAAQGAGAGDDDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIIMQCLGAICGAGVVKGFQQGLYMGNGGGANVVA 175          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 2.708e-78
Identity = 143/172 (83.14%), Postives = 156/172 (90.70%), Query Frame = 1
Query:  157 MEGKEEDVRVGANRYRESQPIGTAAQ-TQDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGAHMLS 669
            MEGKEEDVR+GAN++ E QPIGTAAQ   D KDY EPPPAPLFEPGEL SWSFYRAGIAEFVATFLFLYIT+LTVMGVSKS SKC TVGIQGIAW+FGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRA+FY+IMQCLGA+CGA VVKGFQ+  Y   GGGA++++
Sbjct:    1 MEGKEEDVRLGANKFSERQPIGTAAQGAADDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGVSKSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAVCGAGVVKGFQQGLYMGNGGGANVVA 172          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.029e-77
Identity = 140/171 (81.87%), Postives = 155/171 (90.64%), Query Frame = 1
Query:  157 MEGKEEDVRVGANRYRESQPIGTAAQTQDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGAHMLS 669
            MEGKEEDVRVGAN++ E QPIGT+AQT   KDY EPPPAP FEPGELSSWSFYRAGIAEF+ATFLFLYITVLTVMGV ++ + C +VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFY++MQCLGAICGA VVKGFQ + Y+ LGGGA+ ++
Sbjct:    1 MEGKEEDVRVGANKFPERQPIGTSAQTD--KDYKEPPPAPFFEPGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKRAPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVKGFQPNPYQTLGGGANTVA 169          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.755e-77
Identity = 139/171 (81.29%), Postives = 156/171 (91.23%), Query Frame = 1
Query:  157 MEGKEEDVRVGANRYRESQPIGTAAQTQDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGAHMLS 669
            MEGKEEDVRVGAN++ E QPIGT+AQ+   KDY EPPPAPLFEPGEL+SWSF+RAGIAEF+ATFLFLYITVLTVMGV +S + C +VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAV+Y++MQCLGAICGA VVKGFQ  QY+ LGGGA+ ++
Sbjct:    1 MEGKEEDVRVGANKFPERQPIGTSAQSD--KDYKEPPPAPLFEPGELASWSFWRAGIAEFIATFLFLYITVLTVMGVKRSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTIA 169          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 5.107e-77
Identity = 137/170 (80.59%), Postives = 155/170 (91.18%), Query Frame = 1
Query:  160 EGKEEDVRVGANRYRESQPIGTAAQTQDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGAHMLS 669
            E KEEDV++GAN++RE+QP+GTAAQT   KDY EPPPAPLFEPGELSSWSFYRAGIAEF+ATFLFLYIT+LTVMG+ +S S C +VGIQG+AWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYM+MQCLGAICGA VVKGF    Y+ LGGGA++++
Sbjct:    3 ENKEEDVKLGANKFRETQPLGTAAQTD--KDYKEPPPAPLFEPGELSSWSFYRAGIAEFMATFLFLYITILTVMGLKRSDSLCSSVGIQGVAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQCLGAICGAGVVKGFMVGPYQRLGGGANVVN 170          
BLAST of FC931462 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 6.670e-77
Identity = 138/171 (80.70%), Postives = 155/171 (90.64%), Query Frame = 1
Query:  157 MEGKEEDVRVGANRYRESQPIGTAAQTQDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCPTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGAHMLS 669
            MEGKEEDVRVGAN++ E QPIGT+AQ+   KDY EPPPAP FEPGELSSWSF+RAGIAEF+ATFLFLYITVLTVMGV +S + C +VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRA++Y++MQCLGAICGA VVKGFQ  QY+ LGGGA+ ++
Sbjct:    1 MEGKEEDVRVGANKFPERQPIGTSAQSD--KDYKEPPPAPFFEPGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVKRSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTVA 169          
The following BLAST results are available for this feature:
BLAST of FC931462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
PIP12_ORYSJ1.299e-8084.21Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP11_ORYSJ2.449e-7984.30Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP14_ARATH5.456e-7983.63Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP15_MAIZE2.708e-7883.04Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP13_MAIZE2.708e-7882.86Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP12_MAIZE2.708e-7883.14Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP13_ARATH1.029e-7781.87Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP12_ARATH1.755e-7781.29Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP1_SOLLC5.107e-7780.59Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP11_VICFA6.670e-7780.70Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34105D04EF PostHarvP1 Citrus clementina cDNA clone C34105D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931462 ID=FC931462; Name=FC931462; organism=Citrus clementina; type=EST; length=694bp
GACCAAAAGCTTCACTACCCTTTGTCCCAAACTCACGTTACAAATACCCC
CCGGCTCCCTCACTCTTAAATCGTGAGCCCGTTGTGCCATTTATTGATTC
AATTCACTCCCAAGAAACTTGAACCTATCTTGTCTATTAATTTTCACAAG
AACATAATGGAGGGCAAAGAAGAGGATGTAAGAGTGGGAGCAAATAGGTA
TCGAGAGAGTCAACCTATTGGAACCGCGGCTCAGACTCAGGATGTGAAGG
ATTACACGGAGCCACCTCCGGCGCCGCTCTTTGAGCCCGGCGAATTATCG
TCGTGGTCCTTTTACAGGGCTGGCATTGCGGAGTTTGTGGCCACGTTCTT
GTTTCTTTACATCACTGTTCTAACAGTGATGGGCGTGTCCAAATCCAAAA
GCAAATGTCCCACTGTGGGAATCCAGGGCATCGCTTGGGCTTTTGGCGGC
ATGATCTTCGCTCTAGTCTACTGCACTGCTGGCATTTCAGGGGGTCACAT
TAACCCAGCGGTGACATTCGGGCTGTTCTTGGCCCGAAAGCTGTCGCTTA
CCAGGGCAGTTTTTTACATGATAATGCAGTGTTTAGGGGCCATATGCGGT
GCCGCCGTTGTAAAGGGCTTTCAGAAAAGCCAATATGAAATGCTAGGCGG
CGGTGCCCACATGCTCAGCAAGGCTACAGCAAGGGAGATGGCCT
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