FC931479

Overview
NameFC931479
Unique NameFC931479
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15337 contig Ccv1_Contig15337:1..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC931479 vs. ExPASy Swiss-Prot
Match: CP21C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial OS=Arabidopsis thaliana GN=CYP21-3 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 6.122e-36
Identity = 84/188 (44.68%), Postives = 109/188 (57.98%), Query Frame = 3 
Query:  165 MARMKPQALLIQSKRKKGPTRISAKTXXXXXXXXXXXXXXXXXTYRHWSHSQRSNEQIGNESSTVEDDAYVVSKKFDLPGHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKSKDSK-GFELYITTAPIPD 725
            MA++KPQALL QSK+KKGP+RIS                     YR W+H  RS     N  S +ED A+   K  DLP  A L+T KG + +ELFKD +P  VD+F+  CQ GYFKG  F  V+K++VIQAG S +  A  +W      R  + TS KHE FM+GT K+K+ + GFE +I +A I D
Sbjct:    1 MAKIKPQALLQQSKKKKGPSRISITNIVIYTLAVLLLVFVLFSAYRRWTH--RSEIPTHNGRSVLEDAAFPGMKNVDLPRFATLDTGKGSVTIELFKDTAPNVVDQFMKFCQDGYFKGFLFSRVVKHFVIQAGDSAEFDAVKDWALD---RKNIDTSLKHEEFMVGTPKAKNEQGGFEFFIVSAQIKD 183
The following BLAST results are available for this feature:
BLAST of FC931479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CP21C_ARATH6.122e-3644.68Peptidyl-prolyl cis-trans isomerase CYP21-3, mitoc... [more]
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Properties
Property NameValue
Genbank descriptionC34105E10EF PostHarvP1 Citrus clementina cDNA clone C34105E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931479 ID=FC931479; Name=FC931479; organism=Citrus clementina; type=EST; length=726bp
CCGGGGGAAGAGAGAAAATCGACCCCCAATCCGTGATTAAAACGACACAG
CACTGCACTACAGCAGCAACATAAATCGCCCTCTTCTAGGTTCCTTATTG
AATTAGTTACGAAGAATCAACAACTTGATCAGTTAGAGATTTTCCGAAAT
AAAGTTTCAGCATCATGGCGAGGATGAAACCGCAGGCTTTGTTAATTCAA
AGCAAAAGGAAGAAGGGGCCTACACGAATCAGTGCCAAGACGATCATCAT
TTGCAATTTAATTGTCGTGTTGATAGTGTTGTGCTTAGTTGTCACATATA
GACATTGGTCGCATTCACAAAGGTCAAATGAACAAATAGGGAATGAATCG
TCAACCGTTGAGGATGATGCCTATGTGGTTTCAAAGAAGTTTGATCTTCC
TGGCCATGCTGTTTTAAATACATCTAAAGGTTATATAATAGTGGAACTCT
TCAAAGATGGTTCACCTGAAACCGTGGATAAATTTATTGACTTGTGTCAA
AAGGGGTACTTCAAAGGTATGTCTTTCCATCATGTGATCAAAAACTATGT
CATTCAAGCTGGGCATTCCAAGGATCTTGCAGCTGCTGATGAATGGACAT
CAAGAGGGAAGATCCGCAGTCAGCTGAGGACCAGTCCGAAGCATGAGGCG
TTTATGATTGGAACTGTAAAATCTAAAGACAGCAAAGGATTTGAGCTATA
CATTACAACTGCACCAATACCAGATT
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