FC931483

Overview
NameFC931483
Unique NameFC931483
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931483_ssr141 microsatellite FC931483_ssr141:141..150. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15339 contig Ccv1_Contig15339:1..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC931483 vs. ExPASy Swiss-Prot
Match: Y4213_ARATH (UPF0480 protein At4g32130 OS=Arabidopsis thaliana GN=At4g32130 PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.319e-53
Identity = 105/157 (66.88%), Postives = 122/157 (77.71%), Query Frame = 1 
Query:  208 RVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSARHPGKVQAALTETRRGLNELVLEPLREEQYYEIREPFSIMSLVKSPXXXXXXXXXXXXXXXPKLMENMDPEEMRRAQEEMRSQGVP 678
            RV++P  ++    +   K SN+KV+LNGG+HVTFLRPDGYF+F  + AGTHLIEV A+GYFFSPVRVDVSARH GKVQA LTETRR L ELVLEPLR EQYYE+REPFS+MS+VKSP               PKLMEN+DPEEM+ AQE+MRSQGVP
Sbjct:   39 RVRVPASTVIGHAA---KFSNIKVILNGGQHVTFLRPDGYFTFHKVPAGTHLIEVYALGYFFSPVRVDVSARHRGKVQATLTETRRSLTELVLEPLRAEQYYEMREPFSVMSIVKSPMGLMVGFMVVVVFLMPKLMENIDPEEMKSAQEQMRSQGVP 192
The following BLAST results are available for this feature:
BLAST of FC931483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4213_ARATH1.319e-5366.88UPF0480 protein At4g32130 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionC34105F02EF PostHarvP1 Citrus clementina cDNA clone C34105F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931483 ID=FC931483; Name=FC931483; organism=Citrus clementina; type=EST; length=685bp
GGAAACCGAGAACAATTGTTTCCTTGTAAATTTCACCACTGCACTAGCGC
CATTGAACTCGATTCCACACAAAACTCCGTCGACATGCCGTCCATAATCA
GATCCAAATCGGTTCTCTCAGTATTTTTCATAAATTTATTTCTCTCTCTC
GTCTCTTCGGCCGTTGCAGTTTCGAGCGGGTCTGGTGATGGCTTCAGCAT
CAGTGGCCGTGTCAAACTTCCCGGTATGAGTTTGAAAGCATTTGGCTCTC
CTGGAGGAAAAGCATCGAATGTGAAAGTTGTACTCAATGGTGGCGAACAT
GTGACATTTCTGAGGCCCGATGGATATTTTTCATTCCAGAACATGTCGGC
AGGGACTCATTTAATTGAAGTGGCTGCAATTGGTTATTTCTTTTCTCCGG
TCCGGGTTGATGTTAGTGCCAGACACCCAGGCAAGGTTCAGGCAGCATTG
ACGGAAACCAGGAGGGGTCTGAATGAATTGGTTTTAGAGCCATTGAGAGA
GGAGCAATATTACGAGATTAGAGAACCTTTTTCCATAATGTCTCTTGTGA
AAAGCCCAATGGGTCTCATGATGGGATTTATGCTAGTGGTTGTGTTCCTT
ATGCCTAAATTAATGGAAAATATGGATCCTGAGGAGATGAGACGCGCTCA
AGAGGAGATGAGGAGCCAAGGGGTGCCCNTCACTA
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