FC931486

Overview
NameFC931486
Unique NameFC931486
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931486_ssr13 microsatellite FC931486_ssr13:13..22. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931486_ssr24 microsatellite FC931486_ssr24:24..33. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12665 contig Ccv1_Contig12665:15..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL83_ARATH (60S ribosomal protein L8-3 OS=Arabidopsis thaliana GN=RPL8C PE=2 SV=2)

HSP 1 Score: 413.305 bits (1061), Expect = 6.432e-115
Identity = 190/210 (90.48%), Postives = 206/210 (98.10%), Query Frame = 3
Query:   81 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            MGRVIRAQRKGAGSVFKSHTHHRKGPA+FRSLDFGERNGYLKGVV EIIHDPGRGAPLARV FRHPFR+ KQKELF+AAEGMYTGQF+YCGKKATL+VGNVLP+RSIPEGAV+CNVEHHVGDRGV ARASGDYA++I+HNPDNDT+R+KLPSG+KKI+PSGCRAMIGQVAGGGRTEKP+LKAGNAYHK+RVKRNCWPKVRGVAMNPVEHP
Sbjct:    1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVAFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHP 210          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL81_ARATH (60S ribosomal protein L8-1 OS=Arabidopsis thaliana GN=RPL8A PE=2 SV=2)

HSP 1 Score: 412.92 bits (1060), Expect = 8.400e-115
Identity = 192/210 (91.43%), Postives = 207/210 (98.57%), Query Frame = 3
Query:   81 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            MGRVIRAQRKGAGSVFKSHTHHRKGPA+FRSLDFGERNGYLKGVV EIIHDPGRGAPLARVTFRHPFR+ KQKELF+AAEGMYTGQF+YCGKKATL+VGNVLP+RSIPEGAVVCNVEHHVGDRGVLARASGDYA++I+HNPD+DTTR+KLPSG+KKI+PSGCRAMIGQVAGGGRTEKP+LKAGNAYHK+RVKRN WPKVRGVAMNPVEHP
Sbjct:    1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVTFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHP 210          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL8_SOLLC (60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 412.149 bits (1058), Expect = 1.433e-114
Identity = 192/210 (91.43%), Postives = 203/210 (96.67%), Query Frame = 3
Query:   81 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            MGRVIRAQRKGAGSVFKSHTHHRKGPA+FR+LDFGERNGYLKGV+ E+IHDPGRGAPLARVTFRHPFRY  QKELF+AAEGMYTGQFVYCGKKATLMVGNVLP+RSIPEGAVVCNVEH VGDRGV AR SGDYA++ISHNPDN TTRVKLPSGAKKI+PSGCRAMIGQVAGGGRTEKP+LKAGNAYHK+RVKRNCWPKVRGVAMNPVEHP
Sbjct:    1 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRTLDFGERNGYLKGVITEVIHDPGRGAPLARVTFRHPFRYKHQKELFVAAEGMYTGQFVYCGKKATLMVGNVLPLRSIPEGAVVCNVEHKVGDRGVFARCSGDYAIVISHNPDNGTTRVKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHP 210          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL8_TOBAC (60S ribosomal protein L8 OS=Nicotiana tabacum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 402.905 bits (1034), Expect = 8.693e-112
Identity = 187/210 (89.05%), Postives = 201/210 (95.71%), Query Frame = 3
Query:   81 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            MGR+IRAQRKGAGSVFKSHTHHRKGPA+FRSLDFGERNGYLKGV+ E+IHDPGRGAPLARVTFR+PFRY  QKELF+AAEGMYTGQFVYCGKKATLMVGNVLP+RSIPEGAVVCNVEH VGDRGV AR SG YA++ISHNPDN TTR+KLPSG+KKI+PSGCR MIGQVAGGGRTEKP+LKAGNAYHK+RVKRNCWPKVRGVAMNPVEHP
Sbjct:    1 MGRLIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEVIHDPGRGAPLARVTFRYPFRYNHQKELFVAAEGMYTGQFVYCGKKATLMVGNVLPLRSIPEGAVVCNVEHKVGDRGVFARCSGAYAIVISHNPDNGTTRIKLPSGSKKIVPSGCRRMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHP 210          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL82_ARATH (60S ribosomal protein L8-2 OS=Arabidopsis thaliana GN=RPL8B PE=2 SV=2)

HSP 1 Score: 389.423 bits (999), Expect = 9.946e-108
Identity = 182/211 (86.26%), Postives = 200/211 (94.79%), Query Frame = 3
Query:   81 MGRVIRAQRKGA-GSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            MGRVIRAQRKGA GSVFKSHTHHRKGPA+FRSLD+GERNGYLKG+V EIIHDPGRGAPLARV FRHPFRYMKQKELF+AAEGMYTGQ++YCGKKA LMVGNVLP+ SIPEGAV+CNVE HVGDRG LARASGDYA++I+HNP+++TTRVKLPSG+KKI+PS CRAMIGQVAGGGRTEKP LKAGNAYHK++ KRNCWP VRGVAMNPVEHP
Sbjct:    1 MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLARVAFRHPFRYMKQKELFVAAEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHP 211          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL8_ANOGA (60S ribosomal protein L8 OS=Anopheles gambiae GN=RpL8 PE=2 SV=2)

HSP 1 Score: 326.25 bits (835), Expect = 1.034e-88
Identity = 152/210 (72.38%), Postives = 177/210 (84.29%), Query Frame = 3
Query:   81 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            MGRVIRAQRKGAGSVF++HT  RKG  + R LD+ ER+GYLKGVV +IIHDPGRGAPLA V FR P+R+   K+LFIAAEGMYTGQFVYCG++A L +GNVLP+  +PEG +VCN+E   GDRG LAR SG+YA +I+HNPD   TRVKLPSGAKK++PS  RAMIG VAGGGR +KP+LKAG AYHK++VKRNCWPKVRGVAMNPVEHP
Sbjct:    1 MGRVIRAQRKGAGSVFRAHTKKRKGEPKLRHLDYAERHGYLKGVVKQIIHDPGRGAPLAVVNFRDPYRFRLSKQLFIAAEGMYTGQFVYCGRRAQLQIGNVLPIGLMPEGTIVCNLEEKTGDRGKLARTSGNYASVIAHNPDTKRTRVKLPSGAKKVLPSANRAMIGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPKVRGVAMNPVEHP 210          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL8_XENLA (60S ribosomal protein L8 OS=Xenopus laevis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 325.479 bits (833), Expect = 1.764e-88
Identity = 149/210 (70.95%), Postives = 179/210 (85.24%), Query Frame = 3
Query:   81 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            MGRVIR QRKGAGSVFK+H  HRKG A+ R++DF ERNGY+KG+V +IIHDPGRGAPLA+V FR P+R+ K+ ELF+AAEG++TGQFVYCGKKA L +GNVLPV ++PEG +VC VE   GDRG LARASG+YA +ISHNP+   TRVKLPSG+KK+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP
Sbjct:    1 MGRVIRGQRKGAGSVFKAHVKHRKGAAKLRAIDFAERNGYIKGIVKDIIHDPGRGAPLAKVAFRDPYRFKKRTELFVAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCVEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAIVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHP 210          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL8_SPOFR (60S ribosomal protein L8 OS=Spodoptera frugiperda GN=RpL8 PE=2 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 5.132e-88
Identity = 152/210 (72.38%), Postives = 178/210 (84.76%), Query Frame = 3
Query:   81 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV +IIHDPGRGAPLA V FR P+++  +KELFIA EG+YTGQFVYCGKKATL VGNV+PV ++PEG +VCN+E  +GDRG LARASG++A +I HNPD   TRVKLPSGAKK++PS  R M+G VAGGGR +KP+LKAG AYHK++VKRNCWP VRGVAMNPVEHP
Sbjct:    1 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHP 210          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL8_MAMBR (60S ribosomal protein L8 OS=Mamestra brassicae GN=RpL8 PE=2 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 5.132e-88
Identity = 152/210 (72.38%), Postives = 178/210 (84.76%), Query Frame = 3
Query:   81 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV +IIHDPGRGAPLA V FR P+++  +KELFIA EG+YTGQFVYCGKKATL VGNV+PV ++PEG +VCN+E  +GDRG LARASG++A +I HNPD   TRVKLPSGAKK++PS  R M+G VAGGGR +KP+LKAG AYHK++VKRNCWP VRGVAMNPVEHP
Sbjct:    1 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHP 210          
BLAST of FC931486 vs. ExPASy Swiss-Prot
Match: RL8_XENTR (60S ribosomal protein L8 OS=Xenopus tropicalis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 323.168 bits (827), Expect = 8.754e-88
Identity = 148/210 (70.48%), Postives = 179/210 (85.24%), Query Frame = 3
Query:   81 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 710
            MGRVIR QRKGAGSVFK+H  HRKG A+ R++DF ER+GY+KG+V +IIHDPGRGAPLA+V FR P+R+ K+ ELF+AAEG++TGQFVYCGKKA L +GNVLPV ++PEG +VC VE   GDRG LARASG+YA +ISHNP+   TRVKLPSG+KK+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP
Sbjct:    1 MGRVIRGQRKGAGSVFKAHVKHRKGAAKLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVAFRDPYRFKKRTELFVAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCVEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAIVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHP 210          
The following BLAST results are available for this feature:
BLAST of FC931486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL83_ARATH6.432e-11590.4860S ribosomal protein L8-3 OS=Arabidopsis thaliana... [more]
RL81_ARATH8.400e-11591.4360S ribosomal protein L8-1 OS=Arabidopsis thaliana... [more]
RL8_SOLLC1.433e-11491.4360S ribosomal protein L8 OS=Solanum lycopersicum G... [more]
RL8_TOBAC8.693e-11289.0560S ribosomal protein L8 OS=Nicotiana tabacum GN=R... [more]
RL82_ARATH9.946e-10886.2660S ribosomal protein L8-2 OS=Arabidopsis thaliana... [more]
RL8_ANOGA1.034e-8872.3860S ribosomal protein L8 OS=Anopheles gambiae GN=R... [more]
RL8_XENLA1.764e-8870.9560S ribosomal protein L8 OS=Xenopus laevis GN=rpl8... [more]
RL8_SPOFR5.132e-8872.3860S ribosomal protein L8 OS=Spodoptera frugiperda ... [more]
RL8_MAMBR5.132e-8872.3860S ribosomal protein L8 OS=Mamestra brassicae GN=... [more]
RL8_XENTR8.754e-8870.4860S ribosomal protein L8 OS=Xenopus tropicalis GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34105F05EF PostHarvP1 Citrus clementina cDNA clone C34105F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931486 ID=FC931486; Name=FC931486; organism=Citrus clementina; type=EST; length=711bp
GATCTTCCCAAAACACACACACCTATATATATATTCATCAGCCCGCCGCA
CAAGCTCAGTCTCTTTCGCCCTCTAAAGAAATGGGTCGTGTGATTCGCGC
ACAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGTA
AGGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTAC
CTCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCCC
GCTGGCCCGAGTTACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAGG
AGCTTTTCATTGCCGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTGC
GGCAAGAAAGCCACTCTGATGGTTGGTAATGTGTTGCCCGTTAGATCTAT
CCCTGAAGGAGCTGTCGTTTGCAACGTTGAGCATCATGTTGGTGATCGCG
GTGTTCTCGCTAGAGCTTCTGGTGATTATGCCGTTATCATCAGTCATAAC
CCCGATAATGACACCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGAT
TATTCCAAGTGGCTGCAGAGCTATGATTGGGCAGGTTGCCGGCGGAGGGA
GGACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCATACCACAAATTCAGA
GTGAAGCGAAACTGCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCAGT
GGAGCATCCTC
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