FC931490

Overview
NameFC931490
Unique NameFC931490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15158 contig Ccv1_Contig15158:733..1466. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931490 vs. ExPASy Swiss-Prot
Match: NRAM3_ARATH (Metal transporter Nramp3 OS=Arabidopsis thaliana GN=NRAMP3 PE=2 SV=2)

HSP 1 Score: 356.295 bits (913), Expect = 9.745e-98
Identity = 180/235 (76.60%), Postives = 206/235 (87.66%), Query Frame = 3
Query:   48 KTQFQTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNSKKGRVQEALRYYSIESTIALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKLA-LY*DVSWLV------LSGELIMGIF 731
            K   +TIQ+AVGVVGCIIMPHNVFLHSALVQSR++D  +K RVQEAL YY+IESTIAL +SF+INLFVTTVFAKGFY T+ AN+IGLVNAGQYLQEKYGGG+FPILYIW IGLLAAGQSSTITGTYAGQFIMGGFLN ++KKW+RALITRSCAI+PTIIVALVFD+SE  LDVLNEWLNVLQS+QIPFALIPLL LVS+E IMG+FK+  LY  ++WLV      ++G L++  F
Sbjct:  230 KLSSRTIQKAVGVVGCIIMPHNVFLHSALVQSREVDKRQKYRVQEALNYYTIESTIALFISFLINLFVTTVFAKGFYNTDLANSIGLVNAGQYLQEKYGGGVFPILYIWAIGLLAAGQSSTITGTYAGQFIMGGFLNFKMKKWLRALITRSCAIIPTIIVALVFDSSEATLDVLNEWLNVLQSIQIPFALIPLLCLVSKEQIMGSFKIGPLYKTIAWLVAALVIMINGYLLLEFF 464          
BLAST of FC931490 vs. ExPASy Swiss-Prot
Match: NRAM2_ARATH (Metal transporter Nramp2 OS=Arabidopsis thaliana GN=NRAMP2 PE=2 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 2.171e-97
Identity = 179/231 (77.49%), Postives = 204/231 (88.31%), Query Frame = 3
Query:   60 QTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNSKKGRVQEALRYYSIESTIALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKLA-LY*DVSW------LVLSGELIMGIF 731
            +TI+QAVGVVGC+IMPHNVFLHSALVQSR ID  +K RVQEAL YY IES++AL +SFMINLFVTTVFAKGFYGTE+ANNIGLVNAGQYLQEK+GGGL PILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRA+ITRSCAIVPT+IVA+VF+TSE  LDVLNEWLNVLQSVQIPFAL+PLL LVS+E IMG FK+  +   ++W      ++++G L++  F
Sbjct:  246 KTIRQAVGVVGCVIMPHNVFLHSALVQSRKIDPKRKSRVQEALNYYLIESSVALFISFMINLFVTTVFAKGFYGTEKANNIGLVNAGQYLQEKFGGGLLPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRAVITRSCAIVPTMIVAIVFNTSEASLDVLNEWLNVLQSVQIPFALLPLLTLVSKEEIMGDFKIGPILQRIAWTVAALVMIINGYLLLDFF 476          
BLAST of FC931490 vs. ExPASy Swiss-Prot
Match: NRAM4_ARATH (Metal transporter Nramp4 OS=Arabidopsis thaliana GN=NRAMP4 PE=2 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 2.484e-93
Identity = 173/235 (73.62%), Postives = 202/235 (85.96%), Query Frame = 3
Query:   48 KTQFQTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNSKKGRVQEALRYYSIESTIALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKL-ALY*DVSWLV------LSGELIMGIF 731
            K   +TI+QAVG+VGCIIMPHNVFLHSALVQSR++D  K+ RV+EAL+YYSIEST AL VSF+IN+FVTTVFAK FYGTE A+ IGL NAGQYLQ+KYGGG FPILYIW IG+LAAGQSSTITGTYAGQFIMGGFLNL++KKW+RALITRSCAI+PT+IVALVFD+S+ MLD LNEWLNVLQSVQIPFA+IPLL LVS E IMG+FK+  L   +SW+V      ++G L++  F
Sbjct:  226 KLSSRTIKQAVGIVGCIIMPHNVFLHSALVQSREVDPKKRFRVKEALKYYSIESTGALAVSFIINVFVTTVFAKSFYGTEIADTIGLANAGQYLQDKYGGGFFPILYIWAIGVLAAGQSSTITGTYAGQFIMGGFLNLKMKKWVRALITRSCAIIPTMIVALVFDSSDSMLDELNEWLNVLQSVQIPFAVIPLLCLVSNEQIMGSFKIQPLVQTISWIVAALVIAINGYLMVDFF 460          
BLAST of FC931490 vs. ExPASy Swiss-Prot
Match: NRAM5_ARATH (Metal transporter Nramp5 OS=Arabidopsis thaliana GN=NRAMP5 PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 2.941e-86
Identity = 156/204 (76.47%), Postives = 182/204 (89.22%), Query Frame = 3
Query:   60 QTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNSKKGRVQEALRYYSIESTIALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKL 671
            +TI++AVGVVGC+I PHNVFLHSALVQSR  D  +  RVQEAL YY+IES+ AL VSFMINLFVT VFAKGFYGT+QA++IGLVNAG YLQEKYGGG+FPILYIWGIGLLAAGQSSTITGTYAGQFIM GFL+L++++W+ A ITRS AIVPT+ VA++F+TSE  LDVLNEWLN+LQS+QIPFA+IPLL +VS EHIMG FK+
Sbjct:  248 KTIREAVGVVGCVITPHNVFLHSALVQSRKTDPKEINRVQEALNYYTIESSAALFVSFMINLFVTAVFAKGFYGTKQADSIGLVNAGYYLQEKYGGGVFPILYIWGIGLLAAGQSSTITGTYAGQFIMEGFLDLQMEQWLSAFITRSFAIVPTMFVAIMFNTSEGSLDVLNEWLNILQSMQIPFAVIPLLTMVSNEHIMGVFKI 451          
BLAST of FC931490 vs. ExPASy Swiss-Prot
Match: NRAM1_DICDI (Metal transporter nramp1 homolog OS=Dictyostelium discoideum GN=nramp1 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.332e-54
Identity = 105/199 (52.76%), Postives = 145/199 (72.86%), Query Frame = 3
Query:   66 IQQAVGVVGCIIMPHNVFLHSALVQSRDIDNSKKGRVQEALRYYSIESTIALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGT 662
            I QAVG++G ++MPHN++LHSALVQSR+ID   + +V+ A +Y  +ES  AL++SF+INL + +VFAKGFYG  +   IGL +A  +L +KYG       YIW IGL +AGQ ST+TGTY+GQF+M GFL L++  W R LITR  AIVP ++VA++   S   LD L++WLN+LQS+Q+PFA++P+L   S E IMG+
Sbjct:  254 ISQAVGILGAVVMPHNIYLHSALVQSREIDRKSETQVKIANKYNRLESAFALIISFIINLLLVSVFAKGFYG--ETTEIGLSSAADFLMDKYGK---VAKYIWAIGLFSAGQCSTMTGTYSGQFVMEGFLKLKIAPWKRLLITRCTAIVPAMVVAIL---STSHLDSLDQWLNILQSIQLPFAVVPVLLFTSSEKIMGS 444          
BLAST of FC931490 vs. ExPASy Swiss-Prot
Match: NRAM2_HUMAN (Natural resistance-associated macrophage protein 2 OS=Homo sapiens GN=SLC11A2 PE=1 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 8.938e-51
Identity = 110/239 (46.03%), Postives = 157/239 (65.69%), Query Frame = 3
Query:   66 IQQAVGVVGCIIMPHNVFLHSALVQSRDIDNSKKGRVQEALRYYSIESTIALVVSFMINLFVTTVFAKGFYG------TEQANNIGLVNAGQYLQEK-------YGGGLF-------PILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKLALY*DVSWLVLSGELIM 722
            I+QAVG+VG +IMPHN++LHSALV+SR ++ + K  V+EA +Y+ IES IAL VSF+IN+FV +VFA+ F+G       E   N    +AG + ++        Y GG+          LYIW +G+LAAGQSST+TGTY+GQF+M GFLNL+  ++ R ++TRS AI+PT++VA+  D   + L  +N++LNVLQS+Q+PFALIP+L   S   +M  F   L     W +  G L++
Sbjct:  253 IEQAVGIVGAVIMPHNMYLHSALVKSRQVNRNNKQEVREANKYFFIESCIALFVSFIINVFVVSVFAEAFFGKTNEQVVEVCTNTSSPHAGLFPKDNSTLAVDIYKGGVVLGCYFGPAALYIWAVGILAAGQSSTMTGTYSGQFVMEGFLNLKWSRFARVVLTRSIAIIPTLLVAVFQDV--EHLTGMNDFLNVLQSLQLPFALIPILTFTSLRPVMSDFANGL----GWRIAGGILVL 485          
BLAST of FC931490 vs. ExPASy Swiss-Prot
Match: NRAM1_RAT (Natural resistance-associated macrophage protein 1 OS=Rattus norvegicus GN=Slc11a1 PE=2 SV=3)

HSP 1 Score: 194.512 bits (493), Expect = 4.904e-49
Identity = 110/220 (50.00%), Postives = 146/220 (66.36%), Query Frame = 3
Query:   72 QAVGVVGCIIMPHNVFLHSALVQSRDIDNSKKGRVQEALRYYSIESTIALVVSFMINLFVTTVFAKGFY--GTEQANNIGLVNAGQYLQEK-------------YGGGLF-------PILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTF 665
            QAVG+VG IIMPHN++LHSALV+SR++D +++G V+EA  Y+  E+TIAL VSF+INLFV  VF + FY    E+A NI   N+  +   K             Y GG+          LYIW +GLLAAGQSST+TGTYAGQF+M GFL LR  ++ R L+TRSCAI+PT++VA+  D  +  L  LN+ LNVLQS+ +PFA++P+L   S   +M  F
Sbjct:  199 QAVGIVGAIIMPHNIYLHSALVKSREVDRTRRGDVREANMYFLTEATIALFVSFIINLFVMAVFGQAFYQQTNEEAFNI-CANSSLHNYAKIFPRDNNTVSVDIYQGGVILGCLFGPAALYIWAVGLLAAGQSSTMTGTYAGQFVMEGFLKLRWSRFARVLLTRSCAILPTVLVAVFRDLRD--LSGLNDLLNVLQSLLLPFAVLPILTFTSMPAVMQEF 415          
BLAST of FC931490 vs. ExPASy Swiss-Prot
Match: NRAM2_RAT (Natural resistance-associated macrophage protein 2 OS=Rattus norvegicus GN=Slc11a2 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.365e-49
Identity = 106/239 (44.35%), Postives = 154/239 (64.44%), Query Frame = 3
Query:   66 IQQAVGVVGCIIMPHNVFLHSALVQSRDIDNSKKGRVQEALRYYSIESTIALVVSFMINLFVTTVFAKGFYG------TEQANNIGLVNAGQYLQEK-------YGGGLF-------PILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKLALY*DVSWLVLSGELIM 722
            ++QAVG+VG +IMPHN++LHSALV+SR ++ + K  V+EA +Y+ IES IAL VSF+IN+FV +VFA+ F+        E   N    +A  +  +        Y GG+          LYIW +G+LAAGQSST+TGTY+GQF+M GFLNL+  ++ R ++TRS AI+PT++VA+  D   + L  +N++LNVLQS+Q+PFALIP+L   S   +M  F       + W +  G L++
Sbjct:  253 VEQAVGIVGAVIMPHNMYLHSALVKSRQVNRANKQEVREANKYFFIESCIALFVSFIINVFVVSVFAEAFFEKTNEQVVEVCRNSSSPHADLFPNDNSTLAVDIYKGGVVLGCYFGPAALYIWAVGILAAGQSSTMTGTYSGQFVMEGFLNLKWSRFARVILTRSIAIIPTLLVAVFQDV--EHLTGMNDFLNVLQSLQLPFALIPILTFTSLRPVMSEFSNG----IGWRIAGGILVL 485          
BLAST of FC931490 vs. ExPASy Swiss-Prot
Match: NRAM2_MOUSE (Natural resistance-associated macrophage protein 2 OS=Mus musculus GN=Slc11a2 PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.093e-48
Identity = 106/239 (44.35%), Postives = 154/239 (64.44%), Query Frame = 3
Query:   66 IQQAVGVVGCIIMPHNVFLHSALVQSRDIDNSKKGRVQEALRYYSIESTIALVVSFMINLFVTTVFAKGFYG------TEQANNIGLVNAGQYLQEK-------YGGGLF-------PILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKLALY*DVSWLVLSGELIM 722
            ++QAVG+VG +IMPHN++LHSALV+SR ++ + K  V+EA +Y+ IES IAL VSF+IN+FV +VFA+ F+        E   N    +A  +  +        Y GG+          LYIW +G+LAAGQSST+TGTY+GQF+M GFLNL+  ++ R ++TRS AI+PT++VA+  D   + L  +N++LNVLQS+Q+PFALIP+L   S   +M  F       + W +  G L++
Sbjct:  253 VEQAVGIVGAVIMPHNMYLHSALVKSRQVNRANKQEVREANKYFFIESCIALFVSFIINVFVVSVFAEAFFEKTNKQVVEVCKNNSSPHADLFPSDNSTLAVDIYKGGVVLGCYFGPAALYIWAVGILAAGQSSTMTGTYSGQFVMEGFLNLKWSRFARVILTRSIAIIPTLLVAVFQDV--EHLTGMNDFLNVLQSLQLPFALIPILTFTSLRPVMSEFSNG----IGWRIAGGILVL 485          
BLAST of FC931490 vs. ExPASy Swiss-Prot
Match: NRAM1_MOUSE (Natural resistance-associated macrophage protein 1 OS=Mus musculus GN=Slc11a1 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.427e-48
Identity = 110/219 (50.23%), Postives = 146/219 (66.67%), Query Frame = 3
Query:   72 QAVGVVGCIIMPHNVFLHSALVQSRDIDNSKKGRVQEALRYYSIESTIALVVSFMINLFVTTVFAKGFY--GTEQANNI----GLVNAGQYLQ--------EKYGGGLF-------PILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTF 665
            QAVG+VG IIMPHN++LHSALV+SR++D +++  V+EA  Y+ IE+TIAL VSF+INLFV  VF + FY    E+A NI     L N  +           + Y GG+          LYIW +GLLAAGQSST+TGTYAGQF+M GFL LR  ++ R L+TRSCAI+PT++VA+  D  +  L  LN+ LNVLQS+ +PFA++P+L   S   +M  F
Sbjct:  240 QAVGIVGAIIMPHNIYLHSALVKSREVDRTRRVDVREANMYFLIEATIALSVSFIINLFVMAVFGQAFYQQTNEEAFNICANSSLQNYAKIFPRDNNTVSVDIYQGGVILGCLFGPAALYIWAVGLLAAGQSSTMTGTYAGQFVMEGFLKLRWSRFARVLLTRSCAILPTVLVAVFRDLKD--LSGLNDLLNVLQSLLLPFAVLPILTFTSMPAVMQEF 456          
The following BLAST results are available for this feature:
BLAST of FC931490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
NRAM3_ARATH9.745e-9876.60Metal transporter Nramp3 OS=Arabidopsis thaliana G... [more]
NRAM2_ARATH2.171e-9777.49Metal transporter Nramp2 OS=Arabidopsis thaliana G... [more]
NRAM4_ARATH2.484e-9373.62Metal transporter Nramp4 OS=Arabidopsis thaliana G... [more]
NRAM5_ARATH2.941e-8676.47Metal transporter Nramp5 OS=Arabidopsis thaliana G... [more]
NRAM1_DICDI1.332e-5452.76Metal transporter nramp1 homolog OS=Dictyostelium ... [more]
NRAM2_HUMAN8.938e-5146.03Natural resistance-associated macrophage protein 2... [more]
NRAM1_RAT4.904e-4950.00Natural resistance-associated macrophage protein 1... [more]
NRAM2_RAT8.365e-4944.35Natural resistance-associated macrophage protein 2... [more]
NRAM2_MOUSE1.093e-4844.35Natural resistance-associated macrophage protein 2... [more]
NRAM1_MOUSE1.427e-4850.23Natural resistance-associated macrophage protein 1... [more]

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Properties
Property NameValue
Genbank descriptionC34105F09EF PostHarvP1 Citrus clementina cDNA clone C34105F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931490 ID=FC931490; Name=FC931490; organism=Citrus clementina; type=EST; length=733bp
GAGACCAAGCCAAGTGGCTCTGAGCTTCTTATTGGCATTTTGGTTCCAAA
ACTCAGTTCCAAACAATACAGCAGGCTGTTGGAGTTGTGGGCTGTATTAT
CATGCCTCATAATGTGTTTTTGCACTCCGCTCTTGTGCAATCAAGAGATA
TTGATAACAGTAAGAAAGGCCGTGTCCAAGAAGCTCTCAGATACTATTCC
ATTGAGTCTACTATTGCCCTTGTTGTTTCATTCATGATCAATCTTTTTGT
TACAACTGTTTTTGCAAAGGGGTTTTATGGTACTGAACAGGCCAATAACA
TTGGCCTCGTAAATGCTGGCCAGTACCTTCAAGAGAAGTACGGAGGTGGA
CTTTTCCCAATTTTATATATCTGGGGTATTGGGTTATTAGCAGCTGGACA
GAGTAGCACCATTACCGGCACTTATGCTGGGCAGTTTATCATGGGAGGTT
TCCTAAATTTGAGGTTGAAAAAATGGATGAGGGCACTGATAACACGGAGC
TGTGCCATTGTCCCAACTATTATTGTTGCACTTGTTTTTGATACCTCTGA
AGACATGTTAGATGTTTTAAATGAATGGCTAAATGTGCTACAGTCAGTTC
AGATCCCTTTTGCTCTTATCCCACTTTTATATTTGGTCTCCCAGGAGCAT
ATCATGGGCACTTTCAAATTGGCCCTATATTAAGATGTTTCATGGCTTGT
GCTGTCTGGTGAACTGATCATGGGTATCTTTGC
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