FC931494

Overview
NameFC931494
Unique NameFC931494
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length760
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11304 contig Ccv1_Contig11304:656..1415. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931494 vs. ExPASy Swiss-Prot
Match: CSK2C_ARATH (Casein kinase II subunit beta' OS=Arabidopsis thaliana GN=CKB2 PE=1 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.378e-81
Identity = 144/187 (77.01%), Postives = 154/187 (82.35%), Query Frame = 1 
Query:    1 GLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVKFRV*SSVRVHC*FPFLLAIMLCWELLQLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP 561
            GLS QVPYYDYALDLILDVESSHG+MFTEEQNEL+ESAAEMLYG+IH R+ILTSKG+A+M                             L+KYKNYDFGRCPRVYCCGQPCLPVGQSDIPR+STVKIYCPKCED+YYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKA+QSY  RVFGFKLHKP
Sbjct:  125 GLSHQVPYYDYALDLILDVESSHGEMFTEEQNELIESAAEMLYGMIHARFILTSKGLASM-----------------------------LDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRASTVKIYCPKCEDVYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKASQSYTQRVFGFKLHKP 282
[Close]
BLAST of FC931494 vs. ExPASy Swiss-Prot
Match: CSK2B_ARATH (Casein kinase II subunit beta OS=Arabidopsis thaliana GN=CKB1 PE=1 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 4.009e-81
Identity = 146/187 (78.07%), Postives = 153/187 (81.82%), Query Frame = 1 
Query:    1 GLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVKFRV*SSVRVHC*FPFLLAIMLCWELLQLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP 561
            GLSS VPYY+YALDLILDVESS G+MFTEEQNEL+ESAAEMLYGLIH RYILTSKG+AAM                             L+KYKNYDFGRCPRVYCCGQPCLPVGQSD+PRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKP KATQ+YV RVFGFKLHKP
Sbjct:  130 GLSSLVPYYEYALDLILDVESSQGEMFTEEQNELIESAAEMLYGLIHARYILTSKGLAAM-----------------------------LDKYKNYDFGRCPRVYCCGQPCLPVGQSDLPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPAKATQNYVQRVFGFKLHKP 287
[Close]
BLAST of FC931494 vs. ExPASy Swiss-Prot
Match: CSK2E_ARATH (Putative casein kinase II subunit beta-4 OS=Arabidopsis thaliana GN=At2g44680 PE=2 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 7.076e-78
Identity = 139/185 (75.14%), Postives = 151/185 (81.62%), Query Frame = 1 
Query:    1 GLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVKFRV*SSVRVHC*FPFLLAIMLCWELLQLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 555
            GLS QVPYYDYALDLILDVESS+GDMFTEEQ+E+VESAAEMLYGLIHVRYILT+KGMAAM                             +EKYKNYDFGRCPRV+CCGQ CLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLM YG++KPQK  Q+YVP++FGFK+H
Sbjct:  125 GLSGQVPYYDYALDLILDVESSNGDMFTEEQHEMVESAAEMLYGLIHVRYILTTKGMAAM-----------------------------MEKYKNYDFGRCPRVFCCGQSCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMAYGNMKPQKPAQNYVPKIFGFKVH 280
[Close]
BLAST of FC931494 vs. ExPASy Swiss-Prot
Match: CSK2D_ARATH (Casein kinase II subunit beta-3 OS=Arabidopsis thaliana GN=CKB3 PE=1 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 5.071e-76
Identity = 137/187 (73.26%), Postives = 151/187 (80.75%), Query Frame = 1 
Query:    1 GLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVKFRV*SSVRVHC*FPFLLAIMLCWELLQLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHKP 561
            GLS QVPYYDYALDLILDV++S+ +MFT+EQ+E+VESAAEMLYGLIHVRYILT+KGMAAM                              EKYKN DFGRCPRV+CCGQ CLPVGQSDIPRSSTVKIYCPKCEDI YPRSK+QGNIDGAYFGTTFPHLFLMTYG+LKPQK TQSYVP++FGFK+HKP
Sbjct:  119 GLSGQVPYYDYALDLILDVDASNSEMFTDEQHEMVESAAEMLYGLIHVRYILTTKGMAAMT-----------------------------EKYKNCDFGRCPRVFCCGQSCLPVGQSDIPRSSTVKIYCPKCEDISYPRSKFQGNIDGAYFGTTFPHLFLMTYGNLKPQKPTQSYVPKIFGFKVHKP 276
[Close]
BLAST of FC931494 vs. ExPASy Swiss-Prot
Match: CSK2B_XENLA (Casein kinase II subunit beta OS=Xenopus laevis GN=csnk2b PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.945e-43
Identity = 86/185 (46.49%), Postives = 112/185 (60.54%), Query Frame = 1 
Query:    1 GLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVKFRV*SSVRVHC*FPFLLAIMLCWELLQLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 555
            GL+ QVP+Y  ALD+ILD+E          Q++L+E AAEMLYGLIH RYILT++G+A M                             LEKY+  DFG CPRVYC  QP LP+G SDIP  + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++    +VPR++GFK+H
Sbjct:   38 GLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQM-----------------------------LEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIH 193
[Close]
BLAST of FC931494 vs. ExPASy Swiss-Prot
Match: CSK2B_RAT (Casein kinase II subunit beta OS=Rattus norvegicus GN=Csnk2b PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.945e-43
Identity = 86/185 (46.49%), Postives = 112/185 (60.54%), Query Frame = 1 
Query:    1 GLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVKFRV*SSVRVHC*FPFLLAIMLCWELLQLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 555
            GL+ QVP+Y  ALD+ILD+E          Q++L+E AAEMLYGLIH RYILT++G+A M                             LEKY+  DFG CPRVYC  QP LP+G SDIP  + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++    +VPR++GFK+H
Sbjct:   38 GLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQM-----------------------------LEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIH 193
[Close]
BLAST of FC931494 vs. ExPASy Swiss-Prot
Match: CSK2B_RABIT (Casein kinase II subunit beta OS=Oryctolagus cuniculus GN=CSNK2B PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.945e-43
Identity = 86/185 (46.49%), Postives = 112/185 (60.54%), Query Frame = 1 
Query:    1 GLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVKFRV*SSVRVHC*FPFLLAIMLCWELLQLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 555
            GL+ QVP+Y  ALD+ILD+E          Q++L+E AAEMLYGLIH RYILT++G+A M                             LEKY+  DFG CPRVYC  QP LP+G SDIP  + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++    +VPR++GFK+H
Sbjct:   38 GLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQM-----------------------------LEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIH 193
[Close]
BLAST of FC931494 vs. ExPASy Swiss-Prot
Match: CSK2B_PIG (Casein kinase II subunit beta OS=Sus scrofa GN=CSNK2B PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.945e-43
Identity = 86/185 (46.49%), Postives = 112/185 (60.54%), Query Frame = 1 
Query:    1 GLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVKFRV*SSVRVHC*FPFLLAIMLCWELLQLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 555
            GL+ QVP+Y  ALD+ILD+E          Q++L+E AAEMLYGLIH RYILT++G+A M                             LEKY+  DFG CPRVYC  QP LP+G SDIP  + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++    +VPR++GFK+H
Sbjct:   38 GLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQM-----------------------------LEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIH 193
[Close]
BLAST of FC931494 vs. ExPASy Swiss-Prot
Match: CSK2B_MOUSE (Casein kinase II subunit beta OS=Mus musculus GN=Csnk2b PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.945e-43
Identity = 86/185 (46.49%), Postives = 112/185 (60.54%), Query Frame = 1 
Query:    1 GLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVKFRV*SSVRVHC*FPFLLAIMLCWELLQLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 555
            GL+ QVP+Y  ALD+ILD+E          Q++L+E AAEMLYGLIH RYILT++G+A M                             LEKY+  DFG CPRVYC  QP LP+G SDIP  + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++    +VPR++GFK+H
Sbjct:   38 GLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQM-----------------------------LEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIH 193
[Close]
BLAST of FC931494 vs. ExPASy Swiss-Prot
Match: CSK2B_HUMAN (Casein kinase II subunit beta OS=Homo sapiens GN=CSNK2B PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.945e-43
Identity = 86/185 (46.49%), Postives = 112/185 (60.54%), Query Frame = 1 
Query:    1 GLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMVKFRV*SSVRVHC*FPFLLAIMLCWELLQLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLH 555
            GL+ QVP+Y  ALD+ILD+E          Q++L+E AAEMLYGLIH RYILT++G+A M                             LEKY+  DFG CPRVYC  QP LP+G SDIP  + VK+YCPKC D+Y P+S    + DGAYFGT FPH+  M +   +P++    +VPR++GFK+H
Sbjct:   38 GLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQM-----------------------------LEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIH 193
The following BLAST results are available for this feature:
BLAST of FC931494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CSK2C_ARATH1.378e-8177.01Casein kinase II subunit beta' OS=Arabidopsis thal... [more]
CSK2B_ARATH4.009e-8178.07Casein kinase II subunit beta OS=Arabidopsis thali... [more]
CSK2E_ARATH7.076e-7875.14Putative casein kinase II subunit beta-4 OS=Arabid... [more]
CSK2D_ARATH5.071e-7673.26Casein kinase II subunit beta-3 OS=Arabidopsis tha... [more]
CSK2B_XENLA1.945e-4346.49Casein kinase II subunit beta OS=Xenopus laevis GN... [more]
CSK2B_RAT1.945e-4346.49Casein kinase II subunit beta OS=Rattus norvegicus... [more]
CSK2B_RABIT1.945e-4346.49Casein kinase II subunit beta OS=Oryctolagus cunic... [more]
CSK2B_PIG1.945e-4346.49Casein kinase II subunit beta OS=Sus scrofa GN=CSN... [more]
CSK2B_MOUSE1.945e-4346.49Casein kinase II subunit beta OS=Mus musculus GN=C... [more]
CSK2B_HUMAN1.945e-4346.49Casein kinase II subunit beta OS=Homo sapiens GN=C... [more]

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Properties
Property NameValue
Genbank descriptionC34105G01EF PostHarvP1 Citrus clementina cDNA clone C34105G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931494 ID=FC931494; Name=FC931494; organism=Citrus clementina; type=EST; length=760bp
GGGTTGAGCAGTCAAGTTCCATACTATGATTATGCTCTTGATTTGATATT
GGATGTTGAATCTTCTCATGGTGATATGTTCACTGAAGAACAGAATGAAC
TGGTGGAATCAGCAGCAGAGATGCTGTATGGTCTGATTCATGTACGGTAC
ATCCTTACTAGCAAGGGAATGGCTGCAATGGTAAAATTCAGAGTTTGATC
ATCTGTACGGGTGCATTGTTAATTTCCCTTTTTATTGGCAATTATGTTGT
GTTGGGAACTTTTGCAGTTAGAGAAGTACAAAAACTATGATTTTGGGAGA
TGCCCAAGAGTATACTGCTGTGGGCAACCCTGCCTTCCTGTCGGTCAATC
AGACATCCCTCGTTCAAGTACTGTTAAAATATACTGCCCGAAATGTGAAG
ATATATATTATCCTCGGTCCAAGTACCAAGGCAATATCGATGGTGCTTAT
TTTGGGACTACCTTTCCTCACCTATTTCTAATGACATATGGACACTTAAA
GCCACAAAAGGCTACACAGAGCTATGTCCCAAGGGTTTTTGGTTTCAAGC
TTCACAAGCCCTAACATTGGAGTTGCAAGTTGCGTTAGTGTTGAGAATTC
CGGTGGCAGTGCATTTCACATTTTCTCTTTTGCCTGCCTCTCTACTGAAA
GTATGCATGGCCCCCACAAAGTGAGGTAAGCGGGGTACTTCTGAATATAT
TACAATTGATCGCATATGGATATGTTTAATGCTAGATGGTCTGGTTGAGT
GAAACCTATC
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