FC931501

Overview
NameFC931501
Unique NameFC931501
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11368 contig Ccv1_Contig11368:107..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HSF24_SOLPE (Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.134e-34
Identity = 65/79 (82.28%), Postives = 72/79 (91.14%), Query Frame = 3
Query:  459 MAQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVADKWE 695
            M+QR+ PAPFL+KTYQLVDD +TDDVISWNE G TF+VWKTA+FAKDLLP YFKHNNFSSFVRQ +TYGFRKIV DKWE
Sbjct:    1 MSQRTAPAPFLLKTYQLVDDAATDDVISWNEIGTTFVVWKTAEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWE 79          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HSFB1_ARATH (Heat stress transcription factor B-1 OS=Arabidopsis thaliana GN=HSFB1 PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.556e-33
Identity = 64/78 (82.05%), Postives = 69/78 (88.46%), Query Frame = 3
Query:  462 AQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVADKWE 695
            AQRSVPAPFL KTYQLVDD STDDV+SWNE G  F+VWKTA+FAKDLLP YFKHNNFSSF+RQ +TYGFRK V DKWE
Sbjct:    7 AQRSVPAPFLSKTYQLVDDHSTDDVVSWNEEGTAFVVWKTAEFAKDLLPQYFKHNNFSSFIRQLNTYGFRKTVPDKWE 84          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HFB2B_ORYSJ (Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.535e-32
Identity = 59/77 (76.62%), Postives = 69/77 (89.61%), Query Frame = 3
Query:  465 QRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVADKWE 695
            QR+VP PFL KTYQLVDDP+ DDVISWN+ G+TF+VW+ A+FA+DLLP YFKHNNFSSFVRQ +TYGFRKIV D+WE
Sbjct:   42 QRTVPTPFLTKTYQLVDDPAVDDVISWNDDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDRWE 118          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HFB2C_ORYSJ (Heat stress transcription factor B-2c OS=Oryza sativa subsp. japonica GN=HSFB2C PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.115e-31
Identity = 59/77 (76.62%), Postives = 69/77 (89.61%), Query Frame = 3
Query:  465 QRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVADKWE 695
            QRS+P PFL KTYQLV+DP+ DDVISWNE G+TF+VW+ A+FA+DLLP YFKHNNFSSFVRQ +TYGFRKIV D+WE
Sbjct:   32 QRSLPTPFLTKTYQLVEDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDRWE 108          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HFB4D_ORYSJ (Heat stress transcription factor B-4d OS=Oryza sativa subsp. japonica GN=HSFB4D PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.483e-31
Identity = 60/78 (76.92%), Postives = 68/78 (87.18%), Query Frame = 3
Query:  462 AQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVADKWE 695
            A  + PAPFL KTYQLVDDPSTDDV+SW E  ATF+VW+  +FA+DLLPNYFKHNNFSSFVRQ +TYGFRKIVAD+WE
Sbjct:   29 AVTAAPAPFLSKTYQLVDDPSTDDVVSWGEDEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADRWE 106          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HFB2B_ARATH (Heat stress transcription factor B-2b OS=Arabidopsis thaliana GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.610e-30
Identity = 57/78 (73.08%), Postives = 68/78 (87.18%), Query Frame = 3
Query:  462 AQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVADKWE 695
            +QRS+P PFL KTYQLV+DP  D++ISWNE G TFIVW+ A+FA+DLLP YFKHNNFSSFVRQ +TYGFRK+V D+WE
Sbjct:   52 SQRSIPTPFLTKTYQLVEDPVYDELISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWE 129          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HSFB4_ARATH (Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.684e-30
Identity = 60/95 (63.16%), Postives = 73/95 (76.84%), Query Frame = 3
Query:  429 GGW*GANRERMAQ------RSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVADKWE 695
            GG+ G   ER+        ++VPAPFL KTYQLVDDP+TD V+SW +   TF+VW+  +FA+DLLPNYFKHNNFSSFVRQ +TYGFRKIV D+WE
Sbjct:   10 GGYGGGGGERIQLMVEGQGKAVPAPFLTKTYQLVDDPATDHVVSWGDDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWE 104          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HFB4B_ORYSJ (Heat stress transcription factor B-4b OS=Oryza sativa subsp. japonica GN=HSFB4B PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.684e-30
Identity = 57/78 (73.08%), Postives = 66/78 (84.62%), Query Frame = 3
Query:  462 AQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVADKWE 695
            A + VPAPFL KTYQLVDDP TD ++SW E   TF+VW+  +FA+DLLPNYFKHNNFSSFVRQ +TYGFRKIVAD+WE
Sbjct:   27 AGKPVPAPFLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADRWE 104          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HFB2A_ARATH (Heat stress transcription factor B-2a OS=Arabidopsis thaliana GN=HSFB2A PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.324e-29
Identity = 56/81 (69.14%), Postives = 67/81 (82.72%), Query Frame = 3
Query:  453 ERMAQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVADKWE 695
            E  +QRS+P PFL KT+ LV+D S DDVISWNE G++FIVW   DFAKDLLP +FKHNNFSSFVRQ +TYGF+K+V D+WE
Sbjct:   13 ESSSQRSIPTPFLTKTFNLVEDSSIDDVISWNEDGSSFIVWNPTDFAKDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDRWE 93          
BLAST of FC931501 vs. ExPASy Swiss-Prot
Match: HFB4C_ORYSJ (Heat stress transcription factor B-4c OS=Oryza sativa subsp. japonica GN=HSFB4C PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.356e-28
Identity = 53/79 (67.09%), Postives = 69/79 (87.34%), Query Frame = 3
Query:  462 AQRSVPAPFLMKTYQLVDDPSTDDVISWNESG-ATFIVWKTADFAKDLLPNYFKHNNFSSFVRQTHTYGFRKIVADKWE 695
            AQ++VPAPFL KTYQLVDDP+TD ++SW +   +TF+VW+  +FA+D+LPNYFKHNNFSSFVRQ +TYGFRK+V ++WE
Sbjct:   17 AQKAVPAPFLTKTYQLVDDPATDHIVSWGDDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPERWE 95          
The following BLAST results are available for this feature:
BLAST of FC931501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
HSF24_SOLPE3.134e-3482.28Heat shock factor protein HSF24 OS=Solanum peruvia... [more]
HSFB1_ARATH1.556e-3382.05Heat stress transcription factor B-1 OS=Arabidopsi... [more]
HFB2B_ORYSJ8.535e-3276.62Heat stress transcription factor B-2b OS=Oryza sat... [more]
HFB2C_ORYSJ1.115e-3176.62Heat stress transcription factor B-2c OS=Oryza sat... [more]
HFB4D_ORYSJ2.483e-3176.92Heat stress transcription factor B-4d OS=Oryza sat... [more]
HFB2B_ARATH1.610e-3073.08Heat stress transcription factor B-2b OS=Arabidops... [more]
HSFB4_ARATH4.684e-3063.16Heat stress transcription factor B-4 OS=Arabidopsi... [more]
HFB4B_ORYSJ4.684e-3073.08Heat stress transcription factor B-4b OS=Oryza sat... [more]
HFB2A_ARATH2.324e-2969.14Heat stress transcription factor B-2a OS=Arabidops... [more]
HFB4C_ORYSJ3.356e-2867.09Heat stress transcription factor B-4c OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC34105G08EF PostHarvP1 Citrus clementina cDNA clone C34105G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931501 ID=FC931501; Name=FC931501; organism=Citrus clementina; type=EST; length=696bp
GTCTCTTTTATTTAATTTTTGTTTGATCGTTTATTAATTTATTTTGTTGC
GTTTCTCAAAATTTCTAGAACCCGCGTCACTTTCCTTTCCAATCTCTCTT
TATAAGAGACCCGTGCAAGAATTAACAAAGAGAACGTTTCGAATATTTTT
CAGAGAAGTTATGGTCTTTGCTCATCTAGCCGAAGGACTGGTTAGATTGG
CGATTGCTCATGGAAGCACATAGGAGCAAACGTAGTGGCAATATTTTTCT
TTCTGGGTTTTATTGCTGGGGCTGGGAATTCTTGACTGCCCTCTTGCTCT
TTAGTTGCTCCGTCTAGACCCCAAAAATATATTCATCTCACAAATTAAAG
TAGTAGGTGTTAGAGGGTTTCGAGATTTTCATTCAAGTGTAATTATTTTT
GTTTTTCTCAAAAAGGGTAGTGATTTTGGGGGGTTGGTGAGGGGCAAATC
GGGAAAGAATGGCGCAGAGGTCGGTTCCGGCGCCGTTCCTGATGAAGACG
TACCAGTTGGTGGATGATCCGAGCACTGATGATGTGATATCGTGGAATGA
AAGTGGCGCCACTTTTATTGTCTGGAAAACTGCTGATTTTGCCAAGGATC
TGCTGCCTAATTACTTCAAGCACAACAATTTTTCAAGCTTTGTCCGCCAA
ACTCATACTTATGGATTTCGGAAAATCGTGGCCGACAAATGGGAAT
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