FC931503

Overview
NameFC931503
Unique NameFC931503
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10577 contig Ccv1_Contig10577:8..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931503 vs. ExPASy Swiss-Prot
Match: P2_ARATH (Probable NADP-dependent oxidoreductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2)

HSP 1 Score: 271.937 bits (694), Expect = 2.239e-72
Identity = 137/211 (64.93%), Postives = 166/211 (78.67%), Query Frame = 2
Query:   71 SNKRVILSNYVTGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPS-FVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTA-PQILIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSTASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNSLDLMTLL-LQEEADL 694
            +NK+VI  ++V+GFPKESD   T+ +++L+V EGSK +VL+KNLYLSCDPYMR RM K D  S    ++ PG+PI GYGV++V++S HP+Y K DL+WG  GWEEYS++T    +  KIQHTDVPLSYYTG+LGMPG+TAYAG YEVCSPKKGE VYVS ASGAVGQLVGQFAK+ GCYVVGSAGSKEKVDLLK           +EE+DL
Sbjct:    3 TNKQVIFKDHVSGFPKESDFNFTTTTVELRVPEGSK-SVLVKNLYLSCDPYMRSRMGKPDPSSALAQAYAPGKPIYGYGVSRVIESGHPDYKKGDLLWGIVGWEEYSVITPMAHMHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKKGETVYVSAASGAVGQLVGQFAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDL 212          
BLAST of FC931503 vs. ExPASy Swiss-Prot
Match: P1_ARATH (Probable NADP-dependent oxidoreductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.358e-69
Identity = 131/212 (61.79%), Postives = 163/212 (76.89%), Query Frame = 2
Query:   71 SNKRVILSNYVTGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLD--RPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTA-PQILIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSTASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNSLDLMTLL-LQEEADL 694
            +NK+VIL +YV+GFP ESD   T+ +++L+V EG+ ++VL+KNLYLSCDPYMR RM K D    +   ++ PG+PI GYGV+++++S HP+Y K DL+WG   WEEYS++T       KIQHTDVPLSYYTG+LGMPG+TAYAG YEVCSPK+GE VYVS ASGAVGQLVGQ AK+ GCYVVGSAGSKEKVDLLK           +EE+DL
Sbjct:    4 TNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGT-NSVLVKNLYLSCDPYMRIRMGKPDPSTAALAQAYTPGQPIQGYGVSRIIESGHPDYKKGDLLWGIVAWEEYSVITPMTHAHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDL 214          
BLAST of FC931503 vs. ExPASy Swiss-Prot
Match: YNCB_ECOLI (Putative NADP-dependent oxidoreductase yncB OS=Escherichia coli (strain K12) GN=yncB PE=3 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 3.271e-31
Identity = 76/191 (39.79%), Postives = 110/191 (57.59%), Query Frame = 2
Query:   59 QEAVSNKRVILSNYVTGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQILIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSTASGAVGQLVGQFAKLAGCYVVGSAGSKEK 631
            Q+   N+R +L++   G P   + ++        VA   +  VLL+ +YLS DPYMR RMS  D PS+      G  + G  V++V++S HP+Y   D V G++GW++Y + +   ++    H   P S+  G+LGMPG TAY GL ++  PK+GE + V+ A+G VG  VGQ  KL GC VVG AG  EK
Sbjct:    3 QQKQRNRRWVLASRPHGAPVPENFRLEEDD----VATPGEGQVLLRTVYLSLDPYMRGRMS--DEPSYSPPVDIGGVMVGGTVSRVVESNHPDYQSGDWVLGYSGWQDYDISSGDDLVKLGDHPQNP-SWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATGPVGATVGQIGKLKGCRVVGVAGGAEK 186          
BLAST of FC931503 vs. ExPASy Swiss-Prot
Match: YFMJ_BACSU (Putative NADP-dependent oxidoreductase yfmJ OS=Bacillus subtilis GN=yfmJ PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.287e-31
Identity = 86/208 (41.35%), Postives = 118/208 (56.73%), Query Frame = 2
Query:   71 SNKRVILSNYVTGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVL-DSTHPNYAKDDLVWGFTGWEEYSLVTAPQILIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSTASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNSLDLMTLLLQEEAD 691
            S +++ L+    G P   D +  +    + V E  +  VL+K LY+S DPYMR RM   D  S+V+ F   + ++G  +A+V+ D  H    K D+V G   W+E+S V+    L KI  +  P S Y GILGM G+TAY GL ++  PK+GE V VS A+GAVG  VGQ AK+ G  VVG AGS EK+D LK  L     +  + AD
Sbjct:    4 SQQQIQLARRPQGIPVHEDFRFET----IPVPEPKQGEVLVKTLYVSVDPYMRGRMQ--DTKSYVEPFALDKALSGGVIAEVVSDGNH--LKKGDIVIGNLSWQEFSAVSE-SALRKIDTSLAPASAYLGILGMTGLTAYFGLLDIGRPKEGETVVVSGAAGAVGSTVGQIAKIKGARVVGIAGSDEKIDYLKQELQFDEAINYKTAD 202          
BLAST of FC931503 vs. ExPASy Swiss-Prot
Match: YKM8_SCHPO (Zinc-type alcohol dehydrogenase-like protein PB24D3.08c OS=Schizosaccharomyces pombe GN=SPAPB24D3.08c PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.344e-29
Identity = 83/204 (40.69%), Postives = 112/204 (54.90%), Query Frame = 2
Query:   68 VSNKRVILSNYV---TGFPKESD-MKITSGSIKLKVAEGSKDT-VLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQILIKIQHTD----VPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSTASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNS 652
            VSN  VI+  Y+    G+P   + +        L+ A+  ++T VLLKN+Y S DPY+R RM      S++     G+P     VAKV+ ST   Y     V   +GWEEY+ V+  Q L  +Q  +    +PL  + G LGMP  TAY GL  +  PK GE +Y+S ASGAVGQ+ GQ AK  G +VVGS GS EK  +  +S
Sbjct:    2 VSNNAVIIKKYLDSTAGYPVIGEHLAFEKREFDLENAQVDEETPVLLKNIYTSVDPYLRMRMQSPKHASYIPPLELGKPFYNSTVAKVVKSTLDQYKPGMDVVFVSGWEEYTFVSK-QALGFLQPINNPYKLPLIDFVGSLGMPSQTAYCGLKHIGKPKAGETIYISAASGAVGQMAGQLAKAMGLHVVGSVGSDEKFKICLDS 204          
BLAST of FC931503 vs. ExPASy Swiss-Prot
Match: PTGR1_RABIT (Prostaglandin reductase 1 OS=Oryctolagus cuniculus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.820e-29
Identity = 76/195 (38.97%), Postives = 111/195 (56.92%), Query Frame = 2
Query:   68 VSNKRVILSNYVTGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQI--LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSTASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLK 646
            V  K   L  +  G P +SD ++ +    +++   +   VLL+ L+LS DPYMR    +L           G+ + G  VA+V++S +P +    LV   +GW  +S+    Q+  L+      +PLS   G +GMPG+TAY GL E+C  K G+ V V+ A+GAVG +VGQ AK+ GC VVG+AGS+EKVD LK
Sbjct:    2 VRAKNWTLKKHFHGHPTDSDFELKT----VELPPLNNGEVLLEALFLSVDPYMRLGSKRLKE---------GDTMMGQQVARVVESKNPAWPVGTLVLAHSGWASHSISDGQQLEKLLTEWPDTLPLSLALGTVGMPGITAYFGLLEICGAKSGDTVLVNAAAGAVGAVVGQIAKIKGCRVVGAAGSEEKVDYLK 183          
BLAST of FC931503 vs. ExPASy Swiss-Prot
Match: PTGR1_MOUSE (Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.888e-27
Identity = 80/198 (40.40%), Postives = 108/198 (54.55%), Query Frame = 2
Query:   68 VSNKRVILSNYVTGFPKESDMKITSGSIKLKVAEG---SKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQIL-IKIQHTD-VPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSTASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLK 646
            V  K   L  +  GFP       T G+ +LK  E    +   VLL+ L+LS DPYMR    KL           G+ + G  VA+V++S +  + K  +V    GW  +S+     +  + ++  D +PLS   G +GMPG+TAY GL ++C  K GE V VS A+GAVG +VGQ AKL GC VVG+AGS EKV  LK
Sbjct:    2 VQAKSWTLKKHFEGFP-------TDGNFELKTTELPPLNNGEVLLEALFLSVDPYMRVAAKKLKE---------GDRMMGEQVARVVESKNSAFPKGTIVAALLGWTSHSISDGNGLTKLPVEWPDKLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVMVSAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLK 183          
BLAST of FC931503 vs. ExPASy Swiss-Prot
Match: PTGR1_HUMAN (Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.168e-26
Identity = 76/196 (38.78%), Postives = 105/196 (53.57%), Query Frame = 2
Query:   68 VSNKRVILSNYVTGFPKESDMKITSGSIK-LKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQI--LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSTASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLK 646
            V  K   L  +  G+P  SD ++ +  +  LK  E     VLL+ L+L+ DPYMR    +L           G+ + G  VAKV++S +    K  +V    GW  +S+     +  L+      +PLS   G +GMPG+TAY GL E+C  K GE V V+ A+GAVG +VGQ AKL GC VVG+ GS EKV  L+
Sbjct:    2 VRTKTWTLKKHFVGYPTNSDFELKTAELPPLKNGE-----VLLEALFLTVDPYMRVAAKRLKE---------GDTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQ 183          
BLAST of FC931503 vs. ExPASy Swiss-Prot
Match: PTGR1_BOVIN (Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.138e-26
Identity = 83/215 (38.60%), Postives = 118/215 (54.88%), Query Frame = 2
Query:   68 VSNKRVILSNYVTGFPKESDMKITSGSIK-LKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQI--LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSTASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKN-----SLDLMTLLLQEEA 688
            V  K   L  +  G+P  SD ++ +  +  LK  E     VLL+ LYL+ DPYMR  M+K        S   G+ + G  VA+V++S +  +    +V   +GW  +S+    ++  ++      +PLS   G +GMPG+TAY GL ++C  K GE V VS A+GAVG +VGQ AKL GC VVG+AGS EKV  LK      +L+  T+   EEA
Sbjct:    2 VHAKSWTLKKHFVGYPTNSDFELKTVELPPLKDGE-----VLLEALYLTVDPYMRI-MAK--------SLKEGDMMMGEQVARVVESKNSAFPTGTIVLAPSGWTTHSISNGEKLEKVLAEWPDTLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVLVSAAAGAVGSIVGQIAKLKGCKVVGTAGSDEKVAWLKKHGFDVALNYKTVKSLEEA 202          
BLAST of FC931503 vs. ExPASy Swiss-Prot
Match: PTGR1_RAT (Prostaglandin reductase 1 OS=Rattus norvegicus GN=Ptgr1 PE=2 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 3.503e-25
Identity = 74/195 (37.95%), Postives = 107/195 (54.87%), Query Frame = 2
Query:   68 VSNKRVILSNYVTGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQIL-IKIQHTD-VPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSTASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLK 646
            V  K   L  +  GFP +S+ ++ +     ++   +   VLL+ L+LS DPYMR    KL           G+ + G  VA+V++S +  +    +V    GW  +S+     +  +  +  D +PLS   G +GMPG+TAY GL ++C  K GE V V+ A+GAVG +VGQ AKL GC VVG+AGS EKV  LK
Sbjct:    2 VQAKTWTLKKHFEGFPTDSNFELRT----TELPPLNNGEVLLEALFLSVDPYMRVAAKKLKE---------GDSMMGEQVARVVESKNSAFPTGTIVVALLGWTSHSISDGNGLRKLPAEWPDKLPLSLALGTVGMPGLTAYFGLLDICGLKGGETVLVNAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLK 183          
The following BLAST results are available for this feature:
BLAST of FC931503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
P2_ARATH2.239e-7264.93Probable NADP-dependent oxidoreductase P2 OS=Arabi... [more]
P1_ARATH1.358e-6961.79Probable NADP-dependent oxidoreductase P1 OS=Arabi... [more]
YNCB_ECOLI3.271e-3139.79Putative NADP-dependent oxidoreductase yncB OS=Esc... [more]
YFMJ_BACSU7.287e-3141.35Putative NADP-dependent oxidoreductase yfmJ OS=Bac... [more]
YKM8_SCHPO2.344e-2940.69Zinc-type alcohol dehydrogenase-like protein PB24D... [more]
PTGR1_RABIT6.820e-2938.97Prostaglandin reductase 1 OS=Oryctolagus cuniculus... [more]
PTGR1_MOUSE4.888e-2740.40Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1... [more]
PTGR1_HUMAN3.168e-2638.78Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1... [more]
PTGR1_BOVIN4.138e-2638.60Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 P... [more]
PTGR1_RAT3.503e-2537.95Prostaglandin reductase 1 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34105G10EF PostHarvP1 Citrus clementina cDNA clone C34105G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931503 ID=FC931503; Name=FC931503; organism=Citrus clementina; type=EST; length=699bp
GGCAACAATTCTGATTTTCCTGCCAGAGAAAAAAAACTGAGAAACAATGG
CGGCTGAACAAGAAGCTGTGAGCAATAAGCGGGTGATTCTGAGCAACTAT
GTGACAGGTTTTCCAAAAGAATCAGACATGAAGATAACAAGTGGATCAAT
AAAGCTGAAGGTAGCAGAGGGTTCAAAAGACACAGTGCTTTTGAAGAATC
TTTATCTTTCTTGTGATCCTTACATGCGATGGCGTATGAGCAAGCTTGAT
AGACCTTCTTTTGTTGATTCATTCCATCCTGGTGAGCCTATAAATGGTTA
TGGGGTAGCTAAAGTTTTGGATTCTACACATCCAAATTATGCAAAAGATG
ACTTGGTTTGGGGCTTTACCGGGTGGGAGGAGTACAGTCTCGTTACAGCC
CCACAGATTTTGATTAAAATTCAGCATACAGATGTGCCCCTTTCATACTA
TACTGGAATCCTTGGTATGCCTGGTGTGACCGCATACGCTGGTTTATACG
AAGTTTGCTCTCCGAAGAAAGGTGAGTATGTCTATGTATCTACAGCATCT
GGAGCTGTTGGTCAGCTTGTTGGCCAATTTGCAAAATTGGCTGGTTGCTA
TGTTGTTGGAAGTGCTGGAAGCAAGGAAAAGGTCGATTTGTTGAAGAACA
GTTTGGATTTGATGACGCTTTTACTACAGGAAGAAGCAGACTTGGATGC
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