FC931514

Overview
NameFC931514
Unique NameFC931514
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15508 contig Ccv1_Contig15508:3..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931514 vs. ExPASy Swiss-Prot
Match: U308_ARATH (UPF0308 protein At2g37240, chloroplastic OS=Arabidopsis thaliana GN=At2g37240 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.010e-12
Identity = 50/165 (30.30%), Postives = 75/165 (45.45%), Query Frame = 1
Query:  169 VLPISSPKPRTPTISSSKSRNNAISRPRLLVRASATEFPANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGLAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRF 663
            VLP  S K    ++S    R +A+    +   +S         D L    +    G  +   DLW   +  AVVA  RHFGC  C + A+ L E K   D++GV L+ +G G+ ++A    E+  F  + +YADP+   Y  L    GV  TF   A+ K+   +
Sbjct:   29 VLPGYSVKSHFRSVSL---RRSAVVVSAITGASSGAGIGKGTADSLDTVKVLDLRGNEIPISDLWKDRK--AVVAFARHFGCVLCRKRAAYLAEKKDVMDASGVALVLIGPGSIDQANTFVEQTKFKGE-VYADPNHASYEALEFVSGVSVTFTPKAAMKILESY 187          
The following BLAST results are available for this feature:
BLAST of FC931514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
U308_ARATH2.010e-1230.30UPF0308 protein At2g37240, chloroplastic OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionC34105H09EF PostHarvP1 Citrus clementina cDNA clone C34105H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931514 ID=FC931514; Name=FC931514; organism=Citrus clementina; type=EST; length=699bp
AACGAAGACGATTTGTGATTTTTCACTTGTTCATCGTCTTTCCCTGTTTC
TCAAATGTAAAATCGCACGCCACAAGCCATGGCAGCATTACCTACAGACA
CGTTGCAATCGGTGCGAGTGCGATCTCTCTGCTTCACTCATTCTCAAATT
CCAAAATTGACCTCCGGGGTTCTTCCAATTTCGTCTCCCAAACCTCGAAC
TCCTACAATTTCCTCCTCGAAATCGAGAAACAATGCCATAAGCAGACCCC
GTCTCCTTGTTAGGGCCTCCGCCACTGAATTCCCGGCAAATGTTGGCGAT
TTACTAGGTGACTTCAGCATCTTTACCGCTGCCGGTGAGCCGGTCTTGTT
CAAAGACCTTTGGGACCAGAACGAGGGATTAGCTGTTGTTGCACTTTTAA
GGCACTTTGGGTGCCCTTGCTGTTGGGAACTTGCATCGGCTTTGAAAGAA
TCAAAAGCAAGGTTTGACTCAGCTGGTGTGAAACTAATAGCAGTTGGCGT
TGGTACTCCTAACAAAGCTCAAATTCTTGCAGAGCGGTTACCCTTTCCTA
TGGATTGCCTTTATGCTGATCCTGATCGCAAGGTGTATAATCTATTGGGC
TTATACCATGGTGTCGGCCGTACATTTTTCAATCCAGCTAGTGCTAAAGT
GTTTTCAAGATTTGAGGCTCTGCGNAAAGCTGTGCAAACTATACAATTG
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