FC931516

Overview
NameFC931516
Unique NameFC931516
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13513 contig Ccv1_Contig13513:176..923. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931516 vs. ExPASy Swiss-Prot
Match: HAL3A_ARATH (Phosphopantothenoylcysteine decarboxylase OS=Arabidopsis thaliana GN=HAL3A PE=1 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 4.029e-78
Identity = 133/160 (83.12%), Postives = 150/160 (93.75%), Query Frame = 2
Query:  254 DREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLI 733
            DR+ M+VNT  RKPR+LLAASGSVAAIKFGNLCHCF+EWAEVRAV TKSSLHF+D+ +LP++V  YTDEDEW++WNKIGD VLHIELRRWAD++VIAPLSANTLGKIAGGLCDNLLTCI+RAWDY KPLFVAPAMNT MWNNPFTERHL+S+DELGI+LI
Sbjct:    7 DRQDMEVNTTPRKPRVLLAASGSVAAIKFGNLCHCFTEWAEVRAVVTKSSLHFLDKLSLPQEVTLYTDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIAGGLCDNLLTCIIRAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLI 166          
BLAST of FC931516 vs. ExPASy Swiss-Prot
Match: HAL3B_ARATH (Probable phosphopantothenoylcysteine decarboxylase OS=Arabidopsis thaliana GN=HAL3B PE=2 SV=2)

HSP 1 Score: 276.174 bits (705), Expect = 1.341e-73
Identity = 127/156 (81.41%), Postives = 146/156 (93.59%), Query Frame = 2
Query:  266 MQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLI 733
            M+V+T  RKPRILLAASGSVA+IKF NLCHCFSEWAEV+AVA+KSSL+F+D+ +LP++V  YTDEDEW++WNKIGD VLHIELRRWAD+M+IAPLSANTL KIAGGLCDNLLTCIVRAWDY+KPLFVAPAMNT MWNNPFTERHL+ +DELGI+LI
Sbjct:    3 MEVDTVTRKPRILLAASGSVASIKFSNLCHCFSEWAEVKAVASKSSLNFVDKPSLPQNVTLYTDEDEWSSWNKIGDPVLHIELRRWADVMIIAPLSANTLAKIAGGLCDNLLTCIVRAWDYSKPLFVAPAMNTLMWNNPFTERHLVLLDELGITLI 158          
BLAST of FC931516 vs. ExPASy Swiss-Prot
Match: COAC_MOUSE (Phosphopantothenoylcysteine decarboxylase OS=Mus musculus GN=Ppcdc PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.508e-36
Identity = 73/147 (49.66%), Postives = 95/147 (64.63%), Query Frame = 2
Query:  287 RKPRILLAASGSVAAIKFGNLCHCFSE--WAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELG 721
            RK R+L+  +GSVAA+K   L     +    EV  V T+ + HF     +P  V  Y+D DEW  W +  D VLHI+LRRWAD+M++APL ANTLGK+A G+CDNLLTC++RAWD NKPL   PAMNT MW +P T + +  +   G
Sbjct:   16 RKFRVLVGVTGSVAALKLPLLVSKLLDVPGLEVTVVTTERAKHFYSPQDVP--VTLYSDADEWEMWKRRSDPVLHIDLRRWADLMLVAPLDANTLGKVASGICDNLLTCVIRAWDLNKPLLFCPAMNTAMWEHPLTAQQVAQLKAFG 160          
BLAST of FC931516 vs. ExPASy Swiss-Prot
Match: COAC_HUMAN (Phosphopantothenoylcysteine decarboxylase OS=Homo sapiens GN=PPCDC PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.039e-33
Identity = 70/147 (47.62%), Postives = 93/147 (63.27%), Query Frame = 2
Query:  287 RKPRILLAASGSVAAIKFGNLCHCFSE--WAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELG 721
            RK  +L+  +GSVAA+K   L     +    EV  V T+ + HF     +P  V  Y+D DEW  W    D VLHI+LRRWAD++++APL ANTLGK+A G+CDNLLTC++RAWD +KPL   PAMNT MW +P T + +  +   G
Sbjct:   16 RKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFYSPQDIP--VTLYSDADEWEMWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLLTCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFG 160          
BLAST of FC931516 vs. ExPASy Swiss-Prot
Match: TYSY_SCHPO (Probable thymidylate synthase OS=Schizosaccharomyces pombe GN=SPAC15E1.04 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.232e-31
Identity = 67/146 (45.89%), Postives = 95/146 (65.07%), Query Frame = 2
Query:  290 KPRILLAASGSVAAIKFGNLCHCFSEW--AEVRAVATKSSLHFIDRAALPK-DVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDEL 718
            K  IL+AA+GSVAAIK   +      +   +V+ V T  + +F+++  L    V  Y + D+W  W+ +   + HIELRRWA +++IAPLSANT+ K+A GLCDNLLT ++RAW   KP+ +APAMNT MW NP T+ HL +I  +
Sbjct:   30 KYHILVAATGSVAAIKLTLIVKSLLTYKGVDVQVVLTDPARNFVEKEDLTALGVNVYNNADDWKNWDGLECPITHIELRRWAHLLLIAPLSANTMAKMANGLCDNLLTSLIRAWAPLKPILLAPAMNTLMWTNPITQEHLSAISRI 175          
BLAST of FC931516 vs. ExPASy Swiss-Prot
Match: COAC_DICDI (Putative phosphopantothenoylcysteine decarboxylase OS=Dictyostelium discoideum GN=ppcdc PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.189e-29
Identity = 66/156 (42.31%), Postives = 97/156 (62.18%), Query Frame = 2
Query:  290 KPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFI---DRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDY-NKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIHLSP 745
            K  ++L  +GSVA IK   L     +   +  + T++SL F+   D   +      Y D+DEW   + +  S LHI+LR WA+ ++I+P SANTLGKI+ GLCDNLLT ++RAWDY NK + +APAMNT MW NPFT +H+ ++  +  ++  + P
Sbjct:   12 KKNLILGLTGSVATIKAKLLVEQLIQHFNLIVIPTETSLKFLSDQDFEFISSKCKIYKDKDEWENVDLLKRSALHIDLRNWANSILISPCSANTLGKISNGLCDNLLTSLIRAWDYKNKSMILAPAMNTMMWENPFTFKHIETLKSISPNVFIIDP 167          
BLAST of FC931516 vs. ExPASy Swiss-Prot
Match: VHS3_YEAST (Protein VHS3 OS=Saccharomyces cerevisiae GN=VHS3 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.230e-26
Identity = 54/96 (56.25%), Postives = 72/96 (75.00%), Query Frame = 2
Query:  428 LPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDE 715
            LP  + F+TD+DEW  W +  D VLHIELRRWADI+V+APL+ANTL KIA GLCDNLLT ++RAW+   P+F+AP+M +  +N+  T++H   I E
Sbjct:  434 LPAHIQFWTDQDEWDVWRQRTDPVLHIELRRWADILVVAPLTANTLAKIALGLCDNLLTSVIRAWNPTFPIFLAPSMGSGTFNSIMTKKHFRIIQE 529          
BLAST of FC931516 vs. ExPASy Swiss-Prot
Match: YKI8_YEAST (Uncharacterized protein YKL088W OS=Saccharomyces cerevisiae GN=YKL088W PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.041e-25
Identity = 71/186 (38.17%), Postives = 102/186 (54.84%), Query Frame = 2
Query:  227 MAYSEPTSTDREAMQVNTGLRKP-------------RILLAASGSVAAIK----FGNLCHCFS-EWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWA--TWNKIGDS-----VLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSI 709
            ++ +  T  ++E +   TG R P              IL+ A+GSVA IK       L   +  E   ++ + TK + HF+    +   V  + +ED W     NK   S     +LH ELR+WADI +IAPLSANTL K+A G+C+NLLT ++R W    P+ +APAMNTFM+ NP T++HL S+
Sbjct:  274 LSANNSTHKNKEVITAPTGPRVPFTEFFQKEDDKKFHILIGATGSVATIKVPLIIDKLFKIYGPEKISIQLIVTKPAEHFLKGLKMSTHVKIWREEDAWVFDAVNKNDTSLSLNLILHHELRKWADIFLIAPLSANTLAKLANGICNNLLTSVMRDWSPLTPVLIAPAMNTFMYINPMTKKHLTSL 459          
BLAST of FC931516 vs. ExPASy Swiss-Prot
Match: SIS2_YEAST (Protein SIS2 OS=Saccharomyces cerevisiae GN=SIS2 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.030e-25
Identity = 52/96 (54.17%), Postives = 72/96 (75.00%), Query Frame = 2
Query:  428 LPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDE 715
            LP  +  +TD+DEW  W +  D VLHIELRRWADI+V+APL+ANTL KIA GLCDNLLT ++RAW+ + P+ +AP+M +  +N+  T++ L +I E
Sbjct:  353 LPPHIQLWTDQDEWDAWKQRTDPVLHIELRRWADILVVAPLTANTLSKIALGLCDNLLTSVIRAWNPSYPILLAPSMVSSTFNSMMTKKQLQTIKE 448          
BLAST of FC931516 vs. ExPASy Swiss-Prot
Match: SIS2_CANTR (Protein SIS2 OS=Candida tropicalis GN=SIS2 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.714e-24
Identity = 56/121 (46.28%), Postives = 81/121 (66.94%), Query Frame = 2
Query:  362 SEWAEVRAVATKSSLHFIDRAALP-----KDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSI 709
            S+   ++ + TKSS +F+    L      K V  +TD DEW TW    D VLHIELRRWADI+++ PL+ANTL KI+ G+CDNLLT ++RAW+ + P+ +APAM++  +++  T+R L  I
Sbjct:  296 SDKISIQVILTKSSENFLLPETLNVLENVKKVRVWTDIDEWTTWKTRLDPVLHIELRRWADILLVCPLTANTLAKISLGICDNLLTNVIRAWNSSYPILLAPAMDSHSYSSSTTKRQLRLI 416          
The following BLAST results are available for this feature:
BLAST of FC931516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
HAL3A_ARATH4.029e-7883.13Phosphopantothenoylcysteine decarboxylase OS=Arabi... [more]
HAL3B_ARATH1.341e-7381.41Probable phosphopantothenoylcysteine decarboxylase... [more]
COAC_MOUSE6.508e-3649.66Phosphopantothenoylcysteine decarboxylase OS=Mus m... [more]
COAC_HUMAN1.039e-3347.62Phosphopantothenoylcysteine decarboxylase OS=Homo ... [more]
TYSY_SCHPO8.232e-3145.89Probable thymidylate synthase OS=Schizosaccharomyc... [more]
COAC_DICDI1.189e-2942.31Putative phosphopantothenoylcysteine decarboxylase... [more]
VHS3_YEAST1.230e-2656.25Protein VHS3 OS=Saccharomyces cerevisiae GN=VHS3 P... [more]
YKI8_YEAST1.041e-2538.17Uncharacterized protein YKL088W OS=Saccharomyces c... [more]
SIS2_YEAST3.030e-2554.17Protein SIS2 OS=Saccharomyces cerevisiae GN=SIS2 P... [more]
SIS2_CANTR5.714e-2446.28Protein SIS2 OS=Candida tropicalis GN=SIS2 PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionC34105H12EF PostHarvP1 Citrus clementina cDNA clone C34105H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931516 ID=FC931516; Name=FC931516; organism=Citrus clementina; type=EST; length=748bp
GGTTTTGTCAACGTCGCGGCTGCCGCTCTCTATTTAAAACCCCCCTCGCA
CTCTCTCTACTCTCTAGGTCTAGGCTGCCTCCAAGCCAGCGACCGTTAGT
CGTCGGTTTCCACACTCCGACGCTGCGACGTCGATTGTTGTCTCCCCTCT
GCCGCGCCACTCGTGGATTGCTGTTCTACCACCGCCGGCCGCGGCTGATC
TGATTCATCTCATCTCATGATTGATTATGGCATACTCTGAACCTACAAGT
ACCGATAGGGAGGCGATGCAGGTCAATACTGGTCTGAGGAAACCCCGTAT
TTTACTTGCTGCAAGTGGAAGTGTAGCTGCAATAAAATTTGGGAATCTCT
GTCATTGTTTTTCTGAGTGGGCGGAAGTAAGAGCGGTGGCCACAAAGTCC
TCTCTACACTTCATTGATAGAGCAGCGCTTCCTAAGGATGTGATCTTTTA
CACAGACGAGGATGAATGGGCCACCTGGAACAAAATAGGTGATAGCGTTC
TTCACATCGAGCTCCGCAGATGGGCTGATATTATGGTTATTGCTCCGCTG
TCAGCAAACACACTTGGCAAGATTGCAGGTGGATTGTGTGACAATCTGCT
GACATGCATTGTGCGGGCATGGGACTACAATAAGCCACTGTTTGTTGCAC
CTGCTATGAACACTTTCATGTGGAATAATCCATTCACAGAGCGGCATCTT
ATGTCAATTGATGAGCTTGGAATTTCTCTCATTCACCTGTCTCCAAAA
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