FC931519

Overview
NameFC931519
Unique NameFC931519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15344 contig Ccv1_Contig15344:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_MICAN (Elongation factor P OS=Microcystis aeruginosa (strain NIES-843) GN=efp PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.221e-33
Identity = 67/113 (59.29%), Postives = 85/113 (75.22%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGNGLHLLF 694
            SSND + G+ IE+DG+ WRV+EFLHVKPGKG+AFVRTKL+N  +G  VERTFRAG T+  A + K T Q TYK+G  FVFMD+ TFEE  L    +GD+ K+LKEG  +++LF
Sbjct:    3 SSNDFRSGTTIEIDGSVWRVVEFLHVKPGKGSAFVRTKLKNVQTGNVVERTFRAGETLPSATIEKRTMQHTYKEGDQFVFMDMETFEEATLTPVQMGDRAKYLKEGMEVNILF 115          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_SYNP2 (Elongation factor P OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=efp PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.083e-33
Identity = 67/113 (59.29%), Postives = 89/113 (78.76%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGNGLHLLF 694
            SSND + G++IE+DG+ WRV+EFLHVKPGKG+AFVRTKL+N  +G+ VE+TFRAG TV +A + K T Q TYK+G  FVFMD+ T+EEVRL E  +GD+ K+L E   +++LF
Sbjct:    3 SSNDFRTGTSIELDGSVWRVVEFLHVKPGKGSAFVRTKLKNAQTGSVVEKTFRAGETVPQAILDKRTMQHTYKEGEQFVFMDMETYEEVRLTEAQIGDRVKYLMEEMEVNVLF 115          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_SYNP6 (Elongation factor P OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=efp PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.553e-33
Identity = 68/116 (58.62%), Postives = 87/116 (75.00%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGNGLHLLFLEG 703
            SSND + G+ IE+DGA WRV+EFLHVKPGKG+AFVRTKL+N  +G  VE+TFRAG TV +A + K T Q+TYKDG  FVFMD+ T+EE RL    +GD+ K+LKEG   +++   G
Sbjct:    3 SSNDFRTGTTIEIDGAVWRVVEFLHVKPGKGSAFVRTKLKNAKTGNVVEKTFRAGETVPQAVLEKSTLQYTYKDGDDFVFMDMETYEEGRLTAATIGDRVKYLKEGMEANVITWNG 118          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_SYNE7 (Elongation factor P OS=Synechococcus elongatus (strain PCC 7942) GN=efp PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.553e-33
Identity = 68/116 (58.62%), Postives = 87/116 (75.00%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGNGLHLLFLEG 703
            SSND + G+ IE+DGA WRV+EFLHVKPGKG+AFVRTKL+N  +G  VE+TFRAG TV +A + K T Q+TYKDG  FVFMD+ T+EE RL    +GD+ K+LKEG   +++   G
Sbjct:    3 SSNDFRTGTTIEIDGAVWRVVEFLHVKPGKGSAFVRTKLKNAKTGNVVEKTFRAGETVPQAVLEKSTLQYTYKDGDDFVFMDMETYEEGRLTAATIGDRVKYLKEGMEANVITWNG 118          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_THEEB (Elongation factor P OS=Thermosynechococcus elongatus (strain BP-1) GN=efp PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.034e-32
Identity = 66/112 (58.93%), Postives = 86/112 (76.79%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGNGLHLL 691
            SSND + G +IE+DGA WRV+EFLHVKPGKG+AFVRTKL+N  +G  +ERTFRAG TV +A + K T Q TYKDG  +VFMD+ ++EE RL    VGD+ K+LKEG  ++++
Sbjct:    3 SSNDFRPGVSIELDGAVWRVVEFLHVKPGKGSAFVRTKLKNVQTGNVIERTFRAGETVPQATLEKRTMQHTYKDGEDYVFMDMESYEEARLTPAQVGDRAKYLKEGMEVNIV 114          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_NOSP7 (Elongation factor P OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=efp PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.008e-32
Identity = 66/106 (62.26%), Postives = 83/106 (78.30%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEG 673
            SSND + G +I +DG+ WRVLEFLHVKPGKG+AFVRTKL+N  SG+ +E+TFRAG TV +A + K T Q TYK+G  FVFMD+ T+EE RL  T +GD+ K+LKEG
Sbjct:    3 SSNDFRPGVSIVLDGSVWRVLEFLHVKPGKGSAFVRTKLKNVQSGSVMEKTFRAGETVPQATLEKSTMQHTYKEGDEFVFMDMETYEEGRLTRTQIGDRVKYLKEG 108          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_ACAM1 (Elongation factor P OS=Acaryochloris marina (strain MBIC 11017) GN=efp PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.929e-32
Identity = 64/112 (57.14%), Postives = 87/112 (77.68%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGNGLHLL 691
            SSND + G +IE+DG+ WRV+EFLHVKPGKG+AFVRTKL+N  SG+ VERTFRAG TV +A++ K   Q TYKDG  FVFMD+ ++EE  L++  +G + K+LKEG  ++++
Sbjct:    3 SSNDFRTGVSIELDGSVWRVVEFLHVKPGKGSAFVRTKLKNVQSGSVVERTFRAGETVPQANLEKRVMQHTYKDGDQFVFMDMESYEEASLSQEQIGTRVKYLKEGMEVNVI 114          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_CYAP8 (Elongation factor P OS=Cyanothece sp. (strain PCC 8801) GN=efp PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.326e-31
Identity = 64/113 (56.64%), Postives = 83/113 (73.45%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGNGLHLLF 694
            SSND + G+ IE+DG+ WRV+EFLHVKPGKG+AFVRTKL+N  +G+ VE+TFRAG TV +A + K T Q TYKDG  +VFMD+ T+EE RLN   +G    +LKE     ++F
Sbjct:    3 SSNDFRTGTTIELDGSVWRVVEFLHVKPGKGSAFVRTKLKNAQTGSVVEKTFRAGETVPQATLEKRTMQHTYKDGDQYVFMDMETYEEARLNPEQMGTSVNYLKEEMEADIVF 115          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_SYNS3 (Elongation factor P OS=Synechococcus sp. (strain CC9311) GN=efp PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.673e-31
Identity = 63/106 (59.43%), Postives = 82/106 (77.36%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEG 673
            SSND + G+ IE+DGA WRV+EFLHVKPGKG+AFVRTKL+   SG+ VE+TFRAG  +++A + K T Q TY +G  FVFMD++T+EE RL    +GD +K+LKEG
Sbjct:    3 SSNDFRTGTTIELDGAVWRVVEFLHVKPGKGSAFVRTKLKAVQSGSVVEKTFRAGEMLQQALLEKSTLQHTYMEGEDFVFMDMSTYEETRLTAKQIGDSRKYLKEG 108          
BLAST of FC931519 vs. ExPASy Swiss-Prot
Match: EFP_CYAA5 (Elongation factor P OS=Cyanothece sp. (strain ATCC 51142) GN=efp PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.673e-31
Identity = 64/113 (56.64%), Postives = 85/113 (75.22%), Query Frame = 2
Query:  356 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGNGLHLLF 694
            SSND + G++IE+DG+ WRV+EFLHVKPGKG+AFVRTKL+N  +G+ VERTFRAG TV +A + K T Q TYK+G  +VFMD+ T+EEVRL+   +G    ++KE     +LF
Sbjct:    3 SSNDFRTGTSIELDGSVWRVVEFLHVKPGKGSAFVRTKLKNAQTGSVVERTFRAGETVPQATLEKRTMQHTYKEGEQYVFMDMETYEEVRLSPEQMGTTVNYIKEEMEADVLF 115          
The following BLAST results are available for this feature:
BLAST of FC931519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 495
Match NameE-valueIdentityDescription
EFP_MICAN1.221e-3359.29Elongation factor P OS=Microcystis aeruginosa (str... [more]
EFP_SYNP22.083e-3359.29Elongation factor P OS=Synechococcus sp. (strain A... [more]
EFP_SYNP63.553e-3358.62Elongation factor P OS=Synechococcus sp. (strain A... [more]
EFP_SYNE73.553e-3358.62Elongation factor P OS=Synechococcus elongatus (st... [more]
EFP_THEEB1.034e-3258.93Elongation factor P OS=Thermosynechococcus elongat... [more]
EFP_NOSP73.008e-3262.26Elongation factor P OS=Nostoc punctiforme (strain ... [more]
EFP_ACAM13.929e-3257.14Elongation factor P OS=Acaryochloris marina (strai... [more]
EFP_CYAP83.326e-3156.64Elongation factor P OS=Cyanothece sp. (strain PCC ... [more]
EFP_SYNS35.673e-3159.43Elongation factor P OS=Synechococcus sp. (strain C... [more]
EFP_CYAA55.673e-3156.64Elongation factor P OS=Cyanothece sp. (strain ATCC... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34106A03EF PostHarvP1 Citrus clementina cDNA clone C34106A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931519 ID=FC931519; Name=FC931519; organism=Citrus clementina; type=EST; length=704bp
GGCGTTCATTCTACTACTGTTTTATTCTCATTTTTTTCAAAAAAAAAATA
ATAATAGGGGAAGAAGGTATTGGCTGCTCTCAAGTCTCGATATGCTTTAG
GCGGTAGTACCCAGACTCTCATTCCGGGACACACTCCTTATCTAAGAGAG
CGTGTCGCGGCCTTCTGTATTTTGTTTGATAAAACCAAATATCATTTCTC
ACAGATAACCAACCACCATGGCGGGAACCGCCGCCACCGTTAATCTCTCA
TCAGCGCCCTATCTCCTCCGCCGTTCGTCATTTACTACACTCTCGTCAAA
GCCGTCCGTACTCCCAATGCGACCACGTTCCAAATTTCCCAGGATCTACG
CGTTTAGTAGCAACGATATCAAAGTGGGTTCCAACATTGAAGTTGACGGA
GCTCCGTGGCGTGTTTTGGAGTTTCTTCATGTGAAACCTGGGAAAGGAGC
AGCATTTGTGAGGACCAAGCTTCGCAATTATATGTCTGGAACCACTGTTG
AGAGAACTTTTCGTGCAGGGATTACGGTTGAAGAGGCAGATGTATTCAAG
GAAACCAAGCAATTCACGTACAAAGATGGCTCCATGTTTGTGTTTATGGA
TCTGACCACATTTGAAGAAGTTCGTCTTAATGAGACAGATGTCGGAGATA
AGAAAAAGTGGCTGAAAGAGGGAAATGGACTGCATTTGCTATTTCTGGAA
GGAA
back to top