FC931533

Overview
NameFC931533
Unique NameFC931533
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length806
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931533_ssr27 microsatellite FC931533_ssr27:27..36. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC931533 vs. ExPASy Swiss-Prot
Match: EMF2_ARATH (Polycomb group protein EMBRYONIC FLOWER 2 OS=Arabidopsis thaliana GN=EMF2 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.125e-18
Identity = 40/68 (58.82%), Postives = 46/68 (67.65%), Query Frame = 3
Query:  345 SRSTDQMCREDARVHXXXXXXXXXXXXXXXYCKPVELYNILQRRAIRNPSFLQRCLSYQIHEKHNRRL 548
            SRST+QMC ED+R+                YCKPVELYNI+QRRAIRNP FLQRCL Y+I  KH RR+
Sbjct:   15 SRSTEQMCHEDSRLRISEEEEIAAEESLAAYCKPVELYNIIQRRAIRNPLFLQRCLHYKIEAKHKRRI 82          

HSP 2 Score: 28.1054 bits (61), Expect = 2.125e-18
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 1
Query:  211 MPGIPLVARETSS 249
            MPGIPLV+RETSS
Sbjct:    1 MPGIPLVSRETSS 13          
The following BLAST results are available for this feature:
BLAST of FC931533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
EMF2_ARATH2.125e-1858.82Polycomb group protein EMBRYONIC FLOWER 2 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionC34106B06EF PostHarvP1 Citrus clementina cDNA clone C34106B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931533 ID=FC931533; Name=FC931533; organism=Citrus clementina; type=EST; length=806bp
GGTCGTTAATCTAACTCTCACTCTTATCTCTCTCTCAAAACGCTGCGGAT
TCCTGAAGGAACTTCTCGTTAACCTAAAGCTTCCTCAAGTTTACTTCCAA
ATATCTAAATTAACTTTTCTTAATCTTAGGGTTTTTATTTCTATAAGGTA
TTTGAGTTGGCTTTGCTGAGGAGCTATGATGAATTCGAACTTCGGTGTTA
TCTAGGAAGAATGCCGGGCATCCCTCTAGTGGCACGTGAAACTTCCTCGA
CTATCGGTTCGTTGGTTGGAGGACGACAGTGATGGTTTTGCTGCTTGATT
AATATTGAGGTTTTCTGCGGAATTATTTGAGGCTCATTTGATACTCCAGA
AGCACAGATCAGATGTGCCGTGAAGATGCTCGTGTGCATTTATCTGCAGA
AGAGGAAATTGCTGCTGAAGAGAGTCTGTCAATTTATTGCAAGCCTGTAG
AACTTTACAACATTCTTCAACGGCGTGCTATAAGAAATCCGTCATTTCTT
CAAAGATGTTTGAGCTACCAAATTCATGAAAAGCACAATCGGAGGCTATG
GAATCATTTTCTATTATGTAATGCATGCAGAATGGAGCTCCATAATTTCA
GAGTCTCTTGGGAATTTCTGCATCTTAGGGTTACAACTTTGTAGCCTTAT
TGATTGTAATAAATTAGTCTTCTGAAGAAAGGTGTATCATCATTTATGGG
AACTGTTGGTAGCACCTTGGAAGTAAACTGAATAAACATATGCTGCTGTT
TTAAGTGTCAGATCATATCTGTGAAATTTCTATGCATGGTATGGCACATC
AGTTGT
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