FC931535

Overview
NameFC931535
Unique NameFC931535
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 4.567e-83
Identity = 156/195 (80.00%), Postives = 180/195 (92.31%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMERFQQAN--MVTGQELNAIHA 679
            MGRGKIEIKRIEN+TNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFS+RGRLYEY+N+NIRSTI+RYKKACSD++N+ TV EINA YYQQESAKLRQQIQ +QNSNR+LMGDSLSSL+VKELKQ+ENRLE+ I+RIRSKKHE+LL EIE  QKREIEL+NE++ LR K+AE+ER+QQ +  MV+G E+NAI A
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNNIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTKVAEVERYQQHHHQMVSGSEINAIEA 195          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.246e-72
Identity = 135/197 (68.53%), Postives = 167/197 (84.77%), Query Frame = 2
Query:   86 KNSGPMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMERFQQANMVTGQELNAIH 676
            ++S  +GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL++FS+RGRLYEY+N+++R TI+RYKKACSD  N  T+TE N QYYQQE++KLR+QI+ +QN NRH++G+SL SL  KELK LE+RLE+GI+R+RSKKHEML+AEIE++QKREIEL+N+++ LR KI E    QQ      QE + IH
Sbjct:   11 ESSKKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPTITEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQNDNMYLRSKITERTGLQQ------QESSVIH 201          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 271.937 bits (694), Expect = 2.126e-72
Identity = 139/193 (72.02%), Postives = 167/193 (86.53%), Query Frame = 2
Query:   59 KAELAGLWPKNSGPM---GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMER 628
            ++EL G    +S P+   GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN++++ TI+RYKKA SDNSN+G+V EINAQYYQQESAKLRQQI  +QNSNR LMG+++ S++ KEL+ LE RLER ITRIRSKK+E+L +EI+++QKRE++L N++  LR KIAE ER
Sbjct:    4 QSELGG----DSSPLRKSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQKREVDLHNDNQILRAKIAENER 192          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.800e-71
Identity = 128/185 (69.19%), Postives = 165/185 (89.19%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMERFQQANMVTG 655
            +GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY+N+++++TI+RYKKACSD+SN+G++ E NAQYYQQE++KLR QI  LQN NR+ +G+SL++L +++L+ LE ++E+GI++IR+KK+E+L AEIE++QKREI+L N +  LR KIAE ER QQ N++ G
Sbjct:   17 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERSQQMNLMPG 201          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.800e-71
Identity = 132/175 (75.43%), Postives = 157/175 (89.71%), Query Frame = 2
Query:  104 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMER 628
            GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN++++ TI+RYKKA SDNSN+G+V EINAQYYQQESAKLRQQI  +QNSNR LMG+++ S++ KEL+ LE RL+R + RIRSKK+E+L AEI+++QKRE++L N++  LR KIAE ER
Sbjct:   18 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLDRSVNRIRSKKNELLFAEIDYMQKREVDLHNDNQLLRAKIAENER 192          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 4.010e-71
Identity = 129/180 (71.67%), Postives = 166/180 (92.22%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSN-RHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMERFQQ 637
            MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY+N++++ST++RYKKA SD SNSGTV E+NAQ+YQQES+KLRQQI  LQN+N R ++GDS++++++++LKQ+ENRLE+GI +IR++K+E+L AE+E++QKRE+EL+N+++ LR K+ E ER QQ
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKSTVERYKKANSDTSNSGTVAEVNAQHYQQESSKLRQQISSLQNANSRTIVGDSINTMSLRDLKQVENRLEKGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRSKVVENERGQQ 180          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 4.010e-71
Identity = 128/179 (71.51%), Postives = 164/179 (91.62%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMERFQQ 637
            +GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY+N+++++TI+RYKKACSD+SN+G+++E NAQYYQQE++KLR QI  LQN NR+++G+SL++L++++LK LE ++E+GI++IRSKK+E+L AEIE++QKREI+L N +  LR KIAE ER QQ
Sbjct:   17 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSISEANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERAQQ 195          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 6.840e-71
Identity = 130/193 (67.36%), Postives = 166/193 (86.01%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMER----FQQANMVTGQELN 667
            +GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL+VFS+RGRLYEY+N+++++TI+RYKKACSD+SN+G+V+E NAQYYQQE++KLR QI  L N NR++MG++L+ + +KELK LE R+E+GI++IRSKK+E+L AEIE++QKRE++L N +  LR KIAE ER     QQ N++ G   N
Sbjct:   17 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANNSVKATIERYKKACSDSSNTGSVSEANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKREVDLHNNNQYLRAKIAETERAQHQHQQMNLMPGSSSN 209          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 1.990e-70
Identity = 130/194 (67.01%), Postives = 168/194 (86.60%), Query Frame = 2
Query:   86 KNSGPMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMERF----QQANMVTG 655
            ++S  +GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL++FS+RGRLYEY+N+++R TI+RYKKACSD  N  +VTE N QYYQQE++KLR+QI+ +QNSNRH++G+SL SL  KELK LE RLE+GI+R+RSKK+E+L+AEIE++QKRE+EL++ ++ LR KIAE  R     Q+++++ G
Sbjct:   11 ESSKKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREMELQHNNMYLRAKIAEGARLNPDQQESSVIQG 204          
BLAST of FC931535 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 5.790e-70
Identity = 129/186 (69.35%), Postives = 165/186 (88.71%), Query Frame = 2
Query:  101 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNSNIRSTIDRYKKACSDNSNSGTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRIKIAEMERFQQ-ANMVTG 655
            +GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFS+RGRLYEY+N++++ TI+RYKKAC+D+ N+ +V+E NAQ+YQQE++KLRQ+I  +Q +NR++MG+SL SLTV++LK LE +LE+GI+RIRSKK+E+L AEIE++QK+EI+L N +  LR KIAE ER QQ  N++ G
Sbjct:   17 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKGTIERYKKACTDSPNTSSVSEANAQFYQQEASKLRQEISSIQKNNRNMMGESLGSLTVRDLKGLETKLEKGISRIRSKKNELLFAEIEYMQKKEIDLHNNNQYLRAKIAENERAQQHMNLMPG 202          
The following BLAST results are available for this feature:
BLAST of FC931535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
AGL11_ARATH4.567e-8380.00Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]
AGL5_ARATH1.246e-7268.53Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
AG_ARATH2.126e-7272.02Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
AG_PETHY1.800e-7169.19Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
AG_BRANA1.800e-7175.43Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]
MADS3_ORYSJ4.010e-7171.67MADS-box transcription factor 3 OS=Oryza sativa su... [more]
AG_TOBAC4.010e-7171.51Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AG_SOLLC6.840e-7167.36Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
AGL1_ARATH1.990e-7067.01Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
AG_PANGI5.790e-7069.35Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34106B08EF PostHarvP1 Citrus clementina cDNA clone C34106B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931535 ID=FC931535; Name=FC931535; organism=Citrus clementina; type=EST; length=680bp
GCTATAAAACACAATTGATTTTGGTTTTCTATTTTTCTTCGGGATTCTAA
ATTTTCCGAAAGCTGAATTGGCCGGACTGTGGCCAAAAAACTCAGGTCCA
ATGGGGAGAGGAAAGATTGAGATCAAAAGGATCGAAAACACAACGAATCG
TCAAGTGACCTTCTGCAAGAGGAGAAATGGACTCTTGAAGAAAGCTTATG
AACTTTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCCAGC
CGCGGCCGCCTCTACGAGTACTCCAACAGCAACATAAGGTCAACAATTGA
TAGGTACAAGAAGGCATGTTCAGATAATTCAAATTCCGGCACTGTTACTG
AGATCAATGCTCAGTACTATCAGCAGGAGTCAGCAAAGCTGCGGCAGCAA
ATTCAAATGTTACAGAATTCTAACAGGCATTTGATGGGTGATTCTCTGAG
TTCTTTAACTGTAAAAGAGCTTAAGCAACTGGAGAACAGGCTTGAGCGAG
GCATCACTAGGATCAGGTCCAAGAAGCATGAAATGCTGCTAGCTGAAATT
GAGTTCTTGCAGAAAAGGGAGATTGAGCTGGAAAATGAAAGTGTGTGTCT
CCGAATCAAGATAGCAGAAATGGAGAGGTTTCAGCAAGCAAACATGGTGA
CTGGGCAAGAGCTGAATGCAATCCACGCAT
back to top