FC931539

Overview
NameFC931539
Unique NameFC931539
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931539 vs. ExPASy Swiss-Prot
Match: SVOP_XENLA (Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.267e-16
Identity = 71/229 (31.00%), Postives = 101/229 (44.10%), Query Frame = 1
Query:    1 ESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKXXXXXXXNEDDTTPTEMERDEDSISEAKEMKSEDSTSTLANSNMGGITALLMLLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKC-VSNELQSGKSRDI---------NYGDVFITSFAEFPGLLLAAAVVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICIT 657
            ES RY  L G   +A   L++IA  NG  +P G L+                          + R ED        K  D                  L SP+   +TLLLW ++F NAFSYYGLVLLTTEL    + C +SN+ ++ K +           +Y D+  T+ +EFPGLL+   ++DR+GRK +M+  F       + L     + + T  LF AR  I+
Sbjct:  260 ESARYEVLSGNQEKALATLKRIATENGAPMPLGKLI--------------------------VSRQED------RGKIRD------------------LFSPQFRCTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISNQRKAVKPKCSLACEYLTVEDYTDLLWTTLSEFPGLLVTLWIIDRVGRKKTMAICFIIFSFSALLLFLCVGRNVLTVFLFIARAFIS 438          
BLAST of FC931539 vs. ExPASy Swiss-Prot
Match: YOU1_CAEEL (Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5)

HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16
Identity = 66/226 (29.20%), Postives = 97/226 (42.92%), Query Frame = 1
Query:    1 ESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKXXXXXXXNEDDTTPTEMERDEDSISEAKEMKSEDSTSTLANSNMGGITALLMLLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDI-------NYGDVFITSFAEFPGLLLAAAVVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICIT 657
            ES R+    G    A   L+  A++N  +LP+G LVS                                             ST A S   G  A   LLSP+L K+T+LLW ++   AFSYYG+VL TT L    ++C      +G   ++       +Y D+  T+ AEFPGL++   +++  GRK +M+  +    IF   L F   +   T L+F AR  I+
Sbjct:  259 ESARFDMASGHPERALETLQAAARMNRVQLPTGRLVS---------------------------------------------STKAGSESRGDIA--NLLSPDLRKTTILLWCIWAITAFSYYGMVLFTTVLFQSHDECHGGLFSNGTQMEVCQPLTRSDYFDLLSTTLAEFPGLIITVLIIEWFGRKKTMALEYAVFAIFTFLLYFCLDRFTVTVLIFVARAFIS 437          
BLAST of FC931539 vs. ExPASy Swiss-Prot
Match: SVOP_BOVIN (Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.829e-15
Identity = 69/229 (30.13%), Postives = 102/229 (44.54%), Query Frame = 1
Query:    1 ESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKXXXXXXXNEDDTTPTEMERDEDSISEAKEMKSEDSTSTLANSNMGGITALLMLLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKC-VSNELQSGKSR---------DINYGDVFITSFAEFPGLLLAAAVVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICIT 657
            ES RY  L G   +A   L++IA  NG  +P G L+                          + R ED        K  D                  L +P    +TLLLW ++F NAFSYYGLVLLTTEL    + C +S+  ++ +++         + +Y D+  T+ +EFPG+L+   ++DRLGRK +M+  F       + L     + + T LLF AR  I+
Sbjct:  260 ESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI--------------------------ISRQED------RGKMRD------------------LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRNMLTLLLFIARAFIS 438          
BLAST of FC931539 vs. ExPASy Swiss-Prot
Match: SVOP_PONAB (Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.389e-15
Identity = 69/229 (30.13%), Postives = 102/229 (44.54%), Query Frame = 1
Query:    1 ESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKXXXXXXXNEDDTTPTEMERDEDSISEAKEMKSEDSTSTLANSNMGGITALLMLLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKC-VSNELQSGKSR---------DINYGDVFITSFAEFPGLLLAAAVVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICIT 657
            ES RY  L G   +A   L++IA  NG  +P G L+                          + R ED        K  D                  L +P    +TLLLW ++F NAFSYYGLVLLTTEL    + C +S+  ++ +++         + +Y D+  T+ +EFPG+L+   ++DRLGRK +M+  F       + L     + + T LLF AR  I+
Sbjct:  260 ESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI--------------------------ISRQED------RGKMRD------------------LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTLLLFIARAFIS 438          
BLAST of FC931539 vs. ExPASy Swiss-Prot
Match: SVOP_MOUSE (Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.389e-15
Identity = 70/229 (30.57%), Postives = 102/229 (44.54%), Query Frame = 1
Query:    1 ESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKXXXXXXXNEDDTTPTEMERDEDSISEAKEMKSEDSTSTLANSNMGGITALLMLLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKC-VSNELQSGKSR---------DINYGDVFITSFAEFPGLLLAAAVVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICIT 657
            ES RY  L G   +A   L++IA  NG  +P G L+                          + R ED        K  D                  L +P    +TLLLW ++F NAFSYYGLVLLTTEL    + C +S+  ++ +++           +Y D+  T+ +EFPG+L+   V+DRLGRK +M+  F    +  + L     + + T LLF AR  I+
Sbjct:  260 ESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI--------------------------ISRQED------RGKMRD------------------LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFIIFSLCSLLLFICIGRNVLTLLLFIARAFIS 438          
BLAST of FC931539 vs. ExPASy Swiss-Prot
Match: SVOP_HUMAN (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.389e-15
Identity = 69/229 (30.13%), Postives = 102/229 (44.54%), Query Frame = 1
Query:    1 ESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKXXXXXXXNEDDTTPTEMERDEDSISEAKEMKSEDSTSTLANSNMGGITALLMLLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKC-VSNELQSGKSR---------DINYGDVFITSFAEFPGLLLAAAVVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICIT 657
            ES RY  L G   +A   L++IA  NG  +P G L+                          + R ED        K  D                  L +P    +TLLLW ++F NAFSYYGLVLLTTEL    + C +S+  ++ +++         + +Y D+  T+ +EFPG+L+   ++DRLGRK +M+  F       + L     + + T LLF AR  I+
Sbjct:  260 ESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI--------------------------ISRQED------RGKMRD------------------LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTLLLFIARAFIS 438          
BLAST of FC931539 vs. ExPASy Swiss-Prot
Match: SVOP_RAT (Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.120e-15
Identity = 70/229 (30.57%), Postives = 102/229 (44.54%), Query Frame = 1
Query:    1 ESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKXXXXXXXNEDDTTPTEMERDEDSISEAKEMKSEDSTSTLANSNMGGITALLMLLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKC-VSNELQSGKSR---------DINYGDVFITSFAEFPGLLLAAAVVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICIT 657
            ES RY  L G   +A   L++IA  NG  +P G L+                          + R ED        K  D                  L +P    +TLLLW ++F NAFSYYGLVLLTTEL    + C +S+  ++ +++           +Y D+  T+ +EFPG+L+   V+DRLGRK +M+  F    +  + L     + + T LLF AR  I+
Sbjct:  260 ESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI--------------------------ISRQED------RGKMRD------------------LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVLTLLLFIARAFIS 438          
The following BLAST results are available for this feature:
BLAST of FC931539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SVOP_XENLA1.267e-1631.00Synaptic vesicle 2-related protein OS=Xenopus laev... [more]
YOU1_CAEEL3.686e-1629.20Putative transporter ZK637.1 OS=Caenorhabditis ele... [more]
SVOP_BOVIN1.829e-1530.13Synaptic vesicle 2-related protein OS=Bos taurus G... [more]
SVOP_PONAB2.389e-1530.13Synaptic vesicle 2-related protein OS=Pongo abelii... [more]
SVOP_MOUSE2.389e-1530.57Synaptic vesicle 2-related protein OS=Mus musculus... [more]
SVOP_HUMAN2.389e-1530.13Synaptic vesicle 2-related protein OS=Homo sapiens... [more]
SVOP_RAT3.120e-1530.57Synaptic vesicle 2-related protein OS=Rattus norve... [more]
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Properties
Property NameValue
Genbank descriptionC34106C01EF PostHarvP1 Citrus clementina cDNA clone C34106C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931539 ID=FC931539; Name=FC931539; organism=Citrus clementina; type=EST; length=680bp
GAATCACCAAGGTATTTATGCTTGAAAGGTCGAACAGCTGAAGCACGTCA
TGTCTTGGAGAAAATAGCAAAAATTAATGGCACAAAACTGCCTTCTGGAA
ATCTTGTTTCTGATTGGGAACATGAGTTACAAAATAAAAGTCTTCTATCG
TCAAGTAGTAATGAGGATGATACCACTCCCACGGAAATGGAGAGAGATGA
AGATTCAATTTCTGAGGCAAAAGAAATGAAAAGTGAAGATTCAACTTCCA
CATTGGCAAATTCTAACATGGGTGGCATTACTGCACTGTTAATGCTTCTT
TCGCCAGAATTAATCAAATCAACCTTGCTCTTATGGTTGGTATTCTTTGG
CAATGCATTTTCTTATTATGGGCTTGTATTGCTGACCACTGAGTTGAACA
ATGGACAAAATAAGTGTGTATCAAATGAATTGCAGTCTGGAAAATCTCGG
GATATTAACTATGGAGATGTTTTCATTACTAGTTTTGCTGAGTTTCCTGG
GCTCCTCTTAGCAGCTGCCGTGGTTGATAGACTTGGTCGTAAGCTTTCAA
TGTCATCAATGTTCTTCTGCTGCTGCATATTCCTTGTTCCTTTGCTCTTC
CAACAGCCCAAGGGTTTAACAACTGGTCTTCTCTTTGGAGCTCGAATATG
CATCACTGTAACCTCCACAGTTGTTTATGT
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