FC931543

Overview
NameFC931543
Unique NameFC931543
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11439 contig Ccv1_Contig11439:138..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931543 vs. ExPASy Swiss-Prot
Match: ATX3H_ARATH (Ataxin-3 homolog OS=Arabidopsis thaliana GN=At3g54130 PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 2.662e-78
Identity = 142/163 (87.12%), Postives = 148/163 (90.80%), Query Frame = 1
Query:  193 MEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGR-VPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLK 678
            ME  SNGGMLYHEVQES LCAVHCVNTVLQGPFFSEFDLAA+A+DLD  ERQVMLEG  V   + GDFL EESHNVSL GDFSIQVLQKALEVWDLQVIPLNCP AEPAQIDPELE+AFICHLHDHWFCIRKVNGEWYNFDSL AAP+HLSKFYLSA+LDSLK
Sbjct:    1 MERTSNGGMLYHEVQESNLCAVHCVNTVLQGPFFSEFDLAAVAADLDGKERQVMLEGAAVGGFAPGDFLAEESHNVSLGGDFSIQVLQKALEVWDLQVIPLNCPDAEPAQIDPELESAFICHLHDHWFCIRKVNGEWYNFDSLLAAPQHLSKFYLSAFLDSLK 163          
BLAST of FC931543 vs. ExPASy Swiss-Prot
Match: ATX3_ORYSJ (Putative ataxin-3 homolog OS=Oryza sativa subsp. japonica GN=Os01g0851400 PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.239e-67
Identity = 127/163 (77.91%), Postives = 137/163 (84.05%), Query Frame = 1
Query:  202 ASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASS--GDFLTEE--SHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLK 678
            ASNGG+LYHEVQE KLCAVHCVNT LQGPFFSEFDL+ALA DLD+ ERQVM EG   AA++  GDFL E   SHNVSL GDFSIQVLQKALEVWDLQVIPL+ P       DPELE AFICHL DHWFCIRKVNGEWYNF+SLY APEHLSKFYLSA++D+LK
Sbjct:    7 ASNGGLLYHEVQEGKLCAVHCVNTTLQGPFFSEFDLSALAVDLDQRERQVMSEGAAGAATTAAGDFLAEGEGSHNVSLGGDFSIQVLQKALEVWDLQVIPLDSPDVGSCLFDPELETAFICHLQDHWFCIRKVNGEWYNFNSLYPAPEHLSKFYLSAFIDTLK 169          
BLAST of FC931543 vs. ExPASy Swiss-Prot
Match: ATX3_HUMAN (Ataxin-3 OS=Homo sapiens GN=ATXN3 PE=1 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 2.208e-32
Identity = 66/153 (43.14%), Postives = 96/153 (62.75%), Query Frame = 1
Query:  220 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLK 678
            ++HE QE  LCA HC+N +LQG +FS  +L+++A  LD  ER  M EG V +     FL + S N+   G FSIQV+  AL+VW L++I  N P  +  +IDP  E +FIC+  +HWF +RK+  +W+N +SL   PE +S  YL+ +L  L+
Sbjct:    4 IFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRTFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQ 156          
BLAST of FC931543 vs. ExPASy Swiss-Prot
Match: ATX3_RAT (Ataxin-3 OS=Rattus norvegicus GN=Atxn3 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.766e-32
Identity = 66/153 (43.14%), Postives = 96/153 (62.75%), Query Frame = 1
Query:  220 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLK 678
            ++HE QE  LCA HC+N +LQG +FS  +L+++A  LD  ER  M EG V +     FL + S N+   G FSIQV+  AL+VW L++I  N P  +  +IDP  E +FIC+  +HWF +RK+  +W+N +SL   PE +S  YL+ +L  L+
Sbjct:    4 IFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERLRMAEGGVTSEDYRTFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQ 156          
BLAST of FC931543 vs. ExPASy Swiss-Prot
Match: ATX3_MOUSE (Ataxin-3 OS=Mus musculus GN=Atxn3 PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.766e-32
Identity = 66/153 (43.14%), Postives = 96/153 (62.75%), Query Frame = 1
Query:  220 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLK 678
            ++HE QE  LCA HC+N +LQG +FS  +L+++A  LD  ER  M EG V +     FL + S N+   G FSIQV+  AL+VW L++I  N P  +  +IDP  E +FIC+  +HWF +RK+  +W+N +SL   PE +S  YL+ +L  L+
Sbjct:    4 IFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERLRMAEGGVTSEDYRTFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQ 156          
BLAST of FC931543 vs. ExPASy Swiss-Prot
Match: ATX3_CHICK (Ataxin-3 OS=Gallus gallus GN=ATXN3 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.391e-32
Identity = 66/153 (43.14%), Postives = 95/153 (62.09%), Query Frame = 1
Query:  220 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLK 678
            ++HE QE  LCA HC+N +LQG +FS  +L+++A  LD  ER  M EG V +     FL + S N+   G FSIQV+  AL+VW L++I  N P  +   IDP  E +FIC+  +HWF +RK+  +W+N +SL   PE +S  YL+ +L  L+
Sbjct:    4 IFHERQEGSLCAQHCLNNLLQGEYFSPVELSSIAQQLDEEERMRMAEGGVSSEEYRTFLQQPSVNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLGIDPINEKSFICNYKEHWFTVRKLGKQWFNLNSLLMGPELISDTYLALFLAQLQ 156          
BLAST of FC931543 vs. ExPASy Swiss-Prot
Match: ATX3L_HUMAN (Putative ataxin-3-like protein OS=Homo sapiens GN=ATXN3L PE=5 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.525e-30
Identity = 68/156 (43.59%), Postives = 92/156 (58.97%), Query Frame = 1
Query:  220 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKALA 687
            ++HE QE  LCA HC+N +LQG +FS  +LA++A  LD  ER  M EG V +     FL + S N+   G FSIQV+  AL+ W L++I  N P  +   IDP  E +FIC+   HWF IRK    W+N +SL A PE +S   L+ +L  L+  A
Sbjct:    4 IFHEKQEGFLCAQHCLNNLLQGEYFSPVELASIAHQLDEEERMRMAEGGVTSEEYLAFLQQPSENMDDTGFFSIQVISNALKFWGLEIIHFNNPEYQKLGIDPINERSFICNYKQHWFTIRKFGKHWFNLNSLLAGPELISDTCLANFLARLQQQA 159          
BLAST of FC931543 vs. ExPASy Swiss-Prot
Match: ATX3_CAEEL (Ataxin-3 homolog OS=Caenorhabditis elegans GN=atx-3 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.800e-19
Identity = 50/154 (32.47%), Postives = 85/154 (55.19%), Query Frame = 1
Query:  220 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKA 681
            ++ E QE+ LCA H +N +LQ   +   DL  LA  +D+ E+Q++         + +     S N++  G FSIQVL+KALE + L++  +  P     + +P    A+IC+L +HWF +RK   +W+  +S+   P+ LS  Y+S +L  + +
Sbjct:   10 IFFEHQEAALCAQHALNMLLQDALYKWQDLRDLAIQMDKMEQQIL--------GNANPTPGRSENMNESGYFSIQVLEKALETFSLKLTNIENPAMVDYKNNPLTARAYICNLREHWFVLRKFGNQWFELNSVNRGPKLLSDTYVSMFLHQVSS 155          
BLAST of FC931543 vs. ExPASy Swiss-Prot
Match: ATX3_CAEBR (Ataxin-3 homolog OS=Caenorhabditis briggsae GN=atx-3 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.006e-18
Identity = 47/154 (30.52%), Postives = 82/154 (53.25%), Query Frame = 1
Query:  220 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKA 681
            ++ E Q++ LCA H +N +LQ   F+  +L  LA  +D+ E  ++         +       S N++  G FSIQV++KALE +DL++I +  P     + +P    A++ +L +HWF +RK   +W+  +S+   P+ L+  Y+  YL    A
Sbjct:   11 IFFERQQAALCAQHALNMLLQDSLFTYENLRDLARQMDQMEHDIL--------GNNANAVGRSENMNDSGFFSIQVIEKALETFDLKLINMENPAMAEFKANPLTARAYVLNLREHWFVLRKFGNQWFELNSVKNGPKLLTDTYVKEYLHQFAA 156          
The following BLAST results are available for this feature:
BLAST of FC931543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
ATX3H_ARATH2.662e-7887.12Ataxin-3 homolog OS=Arabidopsis thaliana GN=At3g54... [more]
ATX3_ORYSJ1.239e-6777.91Putative ataxin-3 homolog OS=Oryza sativa subsp. j... [more]
ATX3_HUMAN2.208e-3243.14Ataxin-3 OS=Homo sapiens GN=ATXN3 PE=1 SV=3[more]
ATX3_RAT3.766e-3243.14Ataxin-3 OS=Rattus norvegicus GN=Atxn3 PE=2 SV=1[more]
ATX3_MOUSE3.766e-3243.14Ataxin-3 OS=Mus musculus GN=Atxn3 PE=1 SV=2[more]
ATX3_CHICK8.391e-3243.14Ataxin-3 OS=Gallus gallus GN=ATXN3 PE=2 SV=1[more]
ATX3L_HUMAN3.525e-3043.59Putative ataxin-3-like protein OS=Homo sapiens GN=... [more]
ATX3_CAEEL2.800e-1932.47Ataxin-3 homolog OS=Caenorhabditis elegans GN=atx-... [more]
ATX3_CAEBR9.006e-1830.52Ataxin-3 homolog OS=Caenorhabditis briggsae GN=atx... [more]
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Properties
Property NameValue
Genbank descriptionC34106C06EF PostHarvP1 Citrus clementina cDNA clone C34106C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931543 ID=FC931543; Name=FC931543; organism=Citrus clementina; type=EST; length=688bp
GATTATATATTTATATTTATTTAATGAATAAAATTATAAATTCTTTTCCC
TCATCTTCCTCTTCTCTCCATCGAACATTCGAAACTGAAAAACCTTTCCT
AAGAAACCCGCTGTTACAATAATATCGCAAATAGAAAAAAAAAAATCTAG
GTTTTGTTACCTGGTGCACATAAGAGTTTGTTTTTTTTATTAATGGAAGG
GGCGAGCAACGGAGGGATGTTGTACCACGAGGTACAAGAGTCGAAGCTAT
GCGCGGTGCATTGCGTGAACACGGTGTTACAAGGTCCGTTTTTCTCGGAG
TTCGATTTGGCGGCGCTGGCTTCGGATCTCGATCGTAGTGAGCGCCAGGT
GATGCTCGAAGGTCGCGTCCCCGCTGCTTCCTCCGGCGATTTCCTCACCG
AGGAGTCTCATAACGTCTCTCTCGACGGCGATTTCAGTATCCAGGTTCTG
CAAAAGGCTTTAGAGGTGTGGGATCTGCAAGTCATTCCCCTTAACTGCCC
AATTGCTGAACCTGCCCAGATTGACCCTGAGCTAGAAAATGCGTTTATCT
GTCATTTGCACGACCACTGGTTCTGTATCAGGAAAGTGAATGGAGAATGG
TATAATTTTGACAGTCTTTATGCAGCCCCAGAGCACCTCTCAAAGTTTTA
CCTGTCAGCCTATCTGGATTCGCTAAAGGCTTTGGCTG
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