FC931555

Overview
NameFC931555
Unique NameFC931555
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931555_ssr205 microsatellite FC931555_ssr205:205..216. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12229 contig Ccv1_Contig12229:46..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931555 vs. ExPASy Swiss-Prot
Match: SERA_ARATH (D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 5.347e-41
Identity = 88/144 (61.11%), Postives = 104/144 (72.22%), Query Frame = 3
Query:  231 KPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASX*AGKWQRKQYVGVSLVG*TLA 662
            KP +L+ EKLG+AG++LL EF +VDC+Y+LSPE+L  K++  DALIVRSGTKV R+VFE++ GRLKVVGRAGVGIDNVDL AATE GCL                        RNVAQADAS  AGKW+R +YVGVSLVG TLA
Sbjct:   82 KPRILVTEKLGEAGVNLLREFGDVDCSYDLSPEDLKKKVAESDALIVRSGTKVTREVFEAAKGRLKVVGRAGVGIDNVDLQAATEHGCLVVNAPTANTVAAAEHGIALLASMARNVAQADASIKAGKWERSKYVGVSLVGKTLA 225          
BLAST of FC931555 vs. ExPASy Swiss-Prot
Match: SERA_METJA (D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii GN=serA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.618e-21
Identity = 58/140 (41.43%), Postives = 78/140 (55.71%), Query Frame = 3
Query:  240 VLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASX*AGKWQRKQYVGVSLVG*TL 659
            +L+ + L +  + +L E   V+ A  L+ EEL  KI   D L+VRSGTKV RDV E  A +LKV+GRAGVG+DN+D+ AATE G +                        RN+ QA AS   G+W RK++ G+ L G TL
Sbjct:    4 ILVTDPLHEDAIKILEEVGEVEVATGLTKEELLEKIKDADVLVVRSGTKVTRDVIE-KAEKLKVIGRAGVGVDNIDVEAATEKGIIVVNAPDASSISVAELTMGLMLAAARNIPQATASLKRGEWDRKRFKGIELYGKTL 142          
BLAST of FC931555 vs. ExPASy Swiss-Prot
Match: SERA_METTH (D-3-phosphoglycerate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=serA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.753e-19
Identity = 55/140 (39.29%), Postives = 78/140 (55.71%), Query Frame = 3
Query:  240 VLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASX*AGKWQRKQYVGVSLVG*TL 659
            VLIA+ + + G+  L E A V     ++PEEL   I   DA++VRS TKV R+V E +A RLK++ RAGVG+DNVD+ AAT+ G +                        R +A AD S   GKW++ +++G+ L G TL
Sbjct:    6 VLIADSINEKGISELEEVAEVVVNTTITPEELLDAIKDFDAIVVRSRTKVTREVIE-AAPRLKIIARAGVGVDNVDVKAATDRGIMVINAPESTSITVAEHSIGLMLALARKIAIADRSVKEGKWEKNRFMGIELNGKTL 144          
BLAST of FC931555 vs. ExPASy Swiss-Prot
Match: SERA_PONAB (D-3-phosphoglycerate dehydrogenase OS=Pongo abelii GN=PHGDH PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 2.672e-16
Identity = 51/115 (44.35%), Postives = 64/115 (55.65%), Query Frame = 3
Query:  315 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASX*AGKWQRKQYVGVSLVG*TL 659
            NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS   GKW+RK+++G  L G TL
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTL 148          
BLAST of FC931555 vs. ExPASy Swiss-Prot
Match: SERA_PANTR (D-3-phosphoglycerate dehydrogenase OS=Pan troglodytes GN=PHGDH PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.672e-16
Identity = 51/115 (44.35%), Postives = 64/115 (55.65%), Query Frame = 3
Query:  315 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASX*AGKWQRKQYVGVSLVG*TL 659
            NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS   GKW+RK+++G  L G TL
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTL 148          
BLAST of FC931555 vs. ExPASy Swiss-Prot
Match: SERA_MACFA (D-3-phosphoglycerate dehydrogenase OS=Macaca fascicularis GN=PHGDH PE=2 SV=4)

HSP 1 Score: 85.5001 bits (210), Expect = 2.672e-16
Identity = 51/115 (44.35%), Postives = 64/115 (55.65%), Query Frame = 3
Query:  315 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASX*AGKWQRKQYVGVSLVG*TL 659
            NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS   GKW+RK+++G  L G TL
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTL 148          
BLAST of FC931555 vs. ExPASy Swiss-Prot
Match: SERA_HUMAN (D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4)

HSP 1 Score: 85.5001 bits (210), Expect = 2.672e-16
Identity = 51/115 (44.35%), Postives = 64/115 (55.65%), Query Frame = 3
Query:  315 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASX*AGKWQRKQYVGVSLVG*TL 659
            NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS   GKW+RK+++G  L G TL
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTL 148          
BLAST of FC931555 vs. ExPASy Swiss-Prot
Match: SERA_SYNY3 (D-3-phosphoglycerate dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=serA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.559e-16
Identity = 45/140 (32.14%), Postives = 75/140 (53.57%), Query Frame = 3
Query:  240 VLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASX*AGKWQRKQYVGVSLVG*TL 659
            VL+++ + Q G+D+L + A VD    LS  E+   +   DA+++RS TKV   + ++ + +LK++GRAGVG+DN+D+ AAT  G +                        R++  A+ S    KW+RKQ++G  +   TL
Sbjct:   32 VLVSDSIDQVGIDILKQVAQVDVKTGLSEAEIIDIVPEYDAIMLRSATKVTEKIIQAGS-QLKIIGRAGVGVDNIDVPAATRQGIVVVNSPEGNTIAAAEHALAMMMALARHIPDANKSVKESKWERKQFIGTEVYKKTL 170          
BLAST of FC931555 vs. ExPASy Swiss-Prot
Match: SERA_RAT (D-3-phosphoglycerate dehydrogenase OS=Rattus norvegicus GN=Phgdh PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 4.559e-16
Identity = 51/115 (44.35%), Postives = 63/115 (54.78%), Query Frame = 3
Query:  315 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASX*AGKWQRKQYVGVSLVG*TL 659
            NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS   GKW RK+++G  L G TL
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAELTCGMLMCLARQIPQATASMKDGKWDRKKFMGTELNGKTL 148          
BLAST of FC931555 vs. ExPASy Swiss-Prot
Match: SERA_MOUSE (D-3-phosphoglycerate dehydrogenase OS=Mus musculus GN=Phgdh PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 4.559e-16
Identity = 51/115 (44.35%), Postives = 63/115 (54.78%), Query Frame = 3
Query:  315 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASX*AGKWQRKQYVGVSLVG*TL 659
            NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS   GKW RK+++G  L G TL
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWDRKKFMGTELNGKTL 148          
The following BLAST results are available for this feature:
BLAST of FC931555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
SERA_ARATH5.347e-4161.11D-3-phosphoglycerate dehydrogenase, chloroplastic ... [more]
SERA_METJA1.618e-2141.43D-3-phosphoglycerate dehydrogenase OS=Methanocaldo... [more]
SERA_METTH5.753e-1939.29D-3-phosphoglycerate dehydrogenase OS=Methanobacte... [more]
SERA_PONAB2.672e-1644.35D-3-phosphoglycerate dehydrogenase OS=Pongo abelii... [more]
SERA_PANTR2.672e-1644.35D-3-phosphoglycerate dehydrogenase OS=Pan troglody... [more]
SERA_MACFA2.672e-1644.35D-3-phosphoglycerate dehydrogenase OS=Macaca fasci... [more]
SERA_HUMAN2.672e-1644.35D-3-phosphoglycerate dehydrogenase OS=Homo sapiens... [more]
SERA_SYNY34.559e-1632.14D-3-phosphoglycerate dehydrogenase OS=Synechocysti... [more]
SERA_RAT4.559e-1644.35D-3-phosphoglycerate dehydrogenase OS=Rattus norve... [more]
SERA_MOUSE4.559e-1644.35D-3-phosphoglycerate dehydrogenase OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionC34106D08EF PostHarvP1 Citrus clementina cDNA clone C34106D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931555 ID=FC931555; Name=FC931555; organism=Citrus clementina; type=EST; length=664bp
GGCTCTCGCTCCACTGCACTCCCTCTCCCCATACGACGCCGCTTTAACCA
CCCCGAAAAATGGCCACGTCAGCAGCCTCCTGCGCTGCCTCCCTCCGTCA
GCCTTCCCTCAAGCTATCACTGTCTTCCAAACACTCTCTTTCCCCTCTAT
TCTCCGTCTCCTTCAACCACAAGCGGGCCCCGCCGCGGCTCGTAATAATC
GCATCCGCCGCCGCCGACGGCATCTCCTCAAAACCGACCGTTTTGATCGC
CGAGAAGCTCGGACAGGCCGGCTTGGATCTTCTCAACGAGTTCGCCAACG
TGGACTGCGCATACAACTTGTCGCCAGAGGAGCTCTGCACGAAGATCTCG
CTCTGCGACGCGCTGATCGTGCGCAGCGGCACGAAGGTCAATCGCGACGT
GTTCGAGTCGTCAGCTGGAAGGTTGAAGGTCGTTGGGAGAGCCGGTGTTG
GTATTGATAATGTGGATCTGGCTGCGGCTACTGAGTTTGGTTGCTTGGTT
GTGAACGCGCCGACGGCGAATACCGTTGCGGCTGCTGAGCATGGGATCGC
GCTTTTGGCTGCCATGGCTAGAAATGTCGCCCAGGCTGATGCCTCTNGTT
AGGCTGGAAAGTGGCAAAGGAAACAATATGTGGGTGTCTCCCTTGTGGGN
TAAACACTTGCTGT
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