FC931561 | Citrus Genome Database

Overview


Name	FC931561
Unique Name	FC931561
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	706

Libraries


Library Name	Type
PostHarvP1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig14336	contig	Ccv1_Contig14336:640..1345.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPA_ARATH (T-complex protein 1 subunit alpha OS=Arabidopsis thaliana GN=CCT1 PE=2 SV=1)

HSP 1 Score: 387.882 bits (995), Expect = 2.870e-107
Identity = 200/235 (85.11%), Postives = 213/235 (90.64%), Query Frame = 1

Query:    1 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            ANLVVEAV +VKMTNQRGE+KYPIKGINILKAHG+SARDSY LNGYALN  RAAQGMPLRV+PAKIACLDFNLQKTKMQLGVQV+V DPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRH+AKATGAT+V+TFADMEGEETFD + LGS              I+IKGTKT+SAVSLILRG+NDYMLDEMERALHDA+C VKRTL
Sbjct:  172 ANLVVEAVLSVKMTNQRGEIKYPIKGINILKAHGQSARDSYLLNGYALNTGRAAQGMPLRVSPAKIACLDFNLQKTKMQLGVQVVVNDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHVAKATGATLVTTFADMEGEETFDPAHLGSADEVVEERIADDDVILIKGTKTSSAVSLILRGANDYMLDEMERALHDALCIVKRTL 406

[Close]

BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPA_BOVIN (T-complex protein 1 subunit alpha OS=Bos taurus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.484e-79
Identity = 145/235 (61.70%), Postives = 187/235 (79.57%), Query Frame = 1

Query:    1 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            ANLVV+AV A+K T+ RG+ +YP+  IN+LKAHG+S  +S  +NGYALN    +QGMP R+  AKIACLDF+LQKTKM+LGVQV++TDP +L++IRQRE+D+TKERI+K+L  GANVILTT GIDDM LKYFVEAGA+AVRRV K D++ IAKA+GAT++ST A++EGEETF++S+LG               I+IK TK  ++ S+ILRG+ND+M DEMER+LHDA+C VKR L
Sbjct:  169 ANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKARTSASVILRGANDFMCDEMERSLHDALCVVKRVL 403

[Close]

BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPA_CRIGR (T-complex protein 1 subunit alpha OS=Cricetulus griseus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 5.641e-79
Identity = 144/235 (61.28%), Postives = 187/235 (79.57%), Query Frame = 1

Query:    1 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            AN+VV+AV AVK T+ RG+ +YP+  +NILKAHG+S  +S  +NGYALN    +QGMP R+  AKIACLDF+LQKTKM+LGVQV++TDP +L++IRQRE+D+TKERIEK+L  GANVILTT GIDDM LKYFVEAGA+AVRRV K D++ IAKA+GA+++ST A++EGEETF++++LG               I+IK TK  ++ S+ILRG+ND+M DEMER+LHDA+C VKR L
Sbjct:  169 ANMVVDAVLAVKYTDLRGQPRYPVNSVNILKAHGRSQVESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIEKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGASILSTLANLEGEETFEATMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVL 403

[Close]

BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPA2_MOUSE (T-complex protein 1 subunit alpha B OS=Mus musculus GN=Tcp1 PE=1 SV=3)

HSP 1 Score: 293.893 bits (751), Expect = 5.641e-79
Identity = 143/235 (60.85%), Postives = 187/235 (79.57%), Query Frame = 1

Query:    1 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            AN+VV+AV AVK T+ RG+ +YP+  +NILKAHG+S  +S  +NGYALN    +QGMP R+  AKIACLDF+LQKTKM+LGVQV++TDP +L++IRQRE+D+TKERI+K+L  GANVILTT GIDDM LKYFVEAGA+AVRRV K D++H+AKA+GA+++ST A++EGEETF+ ++LG               I+IK TK  ++ S+ILRG+ND+M DEMER+LHDA+C VKR L
Sbjct:  169 ANMVVDAVLAVKYTDARGQPRYPVNSVNILKAHGRSQIESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMYLKYFVEAGAMAVRRVLKRDLKHVAKASGASILSTLANLEGEETFEVTMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVL 403

[Close]

BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPA_MACFA (T-complex protein 1 subunit alpha OS=Macaca fascicularis GN=TCP1 PE=2 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.257e-78
Identity = 142/235 (60.43%), Postives = 187/235 (79.57%), Query Frame = 1

Query:    1 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            AN+VV+AV A+K T+ RG+ +YP+  +NILKAHG+S  +S  ++GYALN    +QGMP R+  AKIACLDF+LQKTKM+LGVQV++TDP +L++IRQRE+D+TKERI+K+L  GANVILTT GIDDM LKYFVEAGA+AVRRV K D++ IAKA+GAT++ST A++EGEETF++++LG               I+IK TK  ++ S+ILRG+ND+M DEMER+LHDA+C VKR L
Sbjct:  169 ANMVVDAVLAIKYTDTRGQPRYPVNSVNILKAHGRSQMESKLISGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEAAMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVL 403

[Close]

BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPA_HUMAN (T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.641e-78
Identity = 142/235 (60.43%), Postives = 187/235 (79.57%), Query Frame = 1

Query:    1 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            AN+VV+AV A+K T+ RG+ +YP+  +NILKAHG+S  +S  ++GYALN    +QGMP R+  AKIACLDF+LQKTKM+LGVQV++TDP +L++IRQRE+D+TKERI+K+L  GANVILTT GIDDM LKYFVEAGA+AVRRV K D++ IAKA+GAT++ST A++EGEETF++++LG               I+IK TK  ++ S+ILRG+ND+M DEMER+LHDA+C VKR L
Sbjct:  169 ANMVVDAVLAIKYTDIRGQPRYPVNSVNILKAHGRSQMESMLISGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEAAMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVL 403

[Close]

BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPA1_MOUSE (T-complex protein 1 subunit alpha A OS=Mus musculus GN=Tcp1 PE=1 SV=2)

HSP 1 Score: 292.352 bits (747), Expect = 1.641e-78
Identity = 144/235 (61.28%), Postives = 186/235 (79.15%), Query Frame = 1

Query:    1 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            AN+VV+AV AVK T+ RG+ +YPI  +NILKAHG+S  +S  +NGYALN    +QGMP R+  AKIACLDF+LQKTKM+LGVQV++TDP +L++IRQRE+D+TKERI+K+L  GANVILTT GIDDM LKYFVEAGA+AVRRV K D++ +AKA+GAT++ST A++EGEETF+ ++LG               I+IK TK  ++ S+ILRG+ND+M DEMER+LHDA+C VKR L
Sbjct:  169 ANMVVDAVLAVKYTDARGQPRYPINSVNILKAHGRSQIESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKCVAKASGATILSTLANLEGEETFEVTMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVL 403

[Close]

BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPA_MONDO (T-complex protein 1 subunit alpha OS=Monodelphis domestica GN=TCP1 PE=2 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 6.237e-78
Identity = 142/235 (60.43%), Postives = 186/235 (79.15%), Query Frame = 1

Query:    1 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            AN+VV+AV AVK T+ +G+ +YP+  IN+LKAHG+S ++S  +NGYALN   A+QGMP R+  AKIACLDF+LQKTKM+LGVQV++TDP +L++IR+READ+TKERI+K+L  GANVILTT GIDDM LKYFVE+  IAVRRV K D++ IAKA+GAT++ST A +EGEE+F++S+LG               I+IK TK  ++ S+ILRG+ND+M DEMER+LHDA+C VKR L
Sbjct:  169 ANMVVDAVLAVKYTDVKGQPRYPVNSINVLKAHGRSQKESMLINGYALNCVVASQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRKREADITKERIQKILATGANVILTTGGIDDMCLKYFVESMTIAVRRVLKRDLKRIAKASGATILSTLASLEGEESFEASMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVL 403

[Close]

BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPA_PALPA (T-complex protein 1 subunit alpha OS=Paleosuchus palpebrosus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 8.146e-78
Identity = 140/235 (59.57%), Postives = 187/235 (79.57%), Query Frame = 1

Query:    1 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            A++VV+A  AVK T+Q+G+ +YPI  IN+LKAHG+S ++S  +NGYALN    +QGM  R+  AKIACLDF+LQKTKM+LGVQV++TDP +L++IRQRE+D+TKERI+K+L  GANVILTT GIDDM LKYFV+AGA+AVRRV K+D++ IAKA+GAT+ ST A++EGEE+F++S+LG               I+IK TK  ++ S+ILRG+ND+M DEMER++HDA+C VKR L
Sbjct:  172 ASMVVDAASAVKYTDQKGQARYPINSINVLKAHGRSQKESILVNGYALNCVVGSQGMTKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVDAGAMAVRRVLKKDLKRIAKASGATVCSTLANLEGEESFEASMLGQAEEVVQERVCDDELILIKNTKARTSASIILRGANDFMCDEMERSIHDALCVVKRVL 406

[Close]

BLAST of FC931561 vs. ExPASy Swiss-Prot
Match: TCPA_RAT (T-complex protein 1 subunit alpha OS=Rattus norvegicus GN=Tcp1 PE=1 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.370e-77
Identity = 142/235 (60.43%), Postives = 186/235 (79.15%), Query Frame = 1

Query:    1 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGSNDYMLDEMERALHDAICTVKRTL 705
            AN+VV+AV AVK T+ RG+ +YP+  +NILKAHG+S  +S  +NGYALN    +QGM  R+  AKIACLDF+LQKTKM+LGVQV++TDP +L++IRQRE+D+TKERI+K+L  GANVILTT GIDDM LKYFVEAGA+AVRRV K D++ IAKA+GA+++ST A++EGEETF++++LG               I+IK TK  ++ S+ILRG+ND+M DEMER+LHDA+C VKR L
Sbjct:  169 ANMVVDAVLAVKYTDIRGQPRYPVNSVNILKAHGRSQIESMLINGYALNCVVGSQGMLKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGASILSTLANLEGEETFEATMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVL 403

The following BLAST results are available for this feature:

BLAST of FC931561 vs. ExPASy Swiss-Prot

BLAST of FC931561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125


Match Name	E-value	Identity	Description
TCPA_ARATH	2.870e-107	85.11	T-complex protein 1 subunit alpha OS=Arabidopsis t...	[more]
TCPA_BOVIN	1.484e-79	61.70	T-complex protein 1 subunit alpha OS=Bos taurus GN...	[more]
TCPA_CRIGR	5.641e-79	61.28	T-complex protein 1 subunit alpha OS=Cricetulus gr...	[more]
TCPA2_MOUSE	5.641e-79	60.85	T-complex protein 1 subunit alpha B OS=Mus musculu...	[more]
TCPA_MACFA	1.257e-78	60.43	T-complex protein 1 subunit alpha OS=Macaca fascic...	[more]
TCPA_HUMAN	1.641e-78	60.43	T-complex protein 1 subunit alpha OS=Homo sapiens ...	[more]
TCPA1_MOUSE	1.641e-78	61.28	T-complex protein 1 subunit alpha A OS=Mus musculu...	[more]
TCPA_MONDO	6.237e-78	60.43	T-complex protein 1 subunit alpha OS=Monodelphis d...	[more]
TCPA_PALPA	8.146e-78	59.57	T-complex protein 1 subunit alpha OS=Paleosuchus p...	[more]
TCPA_RAT	2.370e-77	60.43	T-complex protein 1 subunit alpha OS=Rattus norveg...	[more]

Pages

Properties


Property Name	Value
Genbank description	C34106E04EF PostHarvP1 Citrus clementina cDNA clone C34106E04, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC931561 ID=FC931561; Name=FC931561; organism=Citrus clementina; type=EST; length=706bp
GCTAATTTGGTTGTAGAAGCAGTTCAAGCAGTAAAGATGACTAATCAACG
AGGTGAAGTCAAGTACCCAATCAAGGGGATCAATATTTTGAAAGCTCATG
GCAAAAGTGCCAGAGATAGCTACTTTCTAAATGGGTATGCTCTTAACGCT
TTTCGTGCTGCTCAAGGAATGCCTCTTAGAGTTGCCCCTGCAAAGATTGC
CTGTCTTGACTTTAATCTCCAGAAGACAAAAATGCAATTGGGTGTCCAAG
TCTTAGTCACCGATCCGAGAGAACTTGAGAAAATTCGTCAAAGAGAAGCT
GATATGACGAAGGAACGTATTGAGAAACTTCTGAAAGCTGGAGCCAATGT
TATTCTGACAACAAAAGGCATCGATGACATGGCACTGAAGTACTTTGTGG
AGGCTGGGGCTATTGCTGTTAGACGTGTTCGGAAGGAGGATATGCGACAC
ATTGCCAAGGCAACTGGTGCAACTATGGTTTCAACATTCGCTGACATGGA
AGGGGAGGAAACATTTGATTCGTCACTTCTTGGATCTGCTGATGAAGTGG
TAGAAGAGCGTGTTGCCGATGATGATGTGATTATGATAAAGGGGACTAAA
ACTACAAGTGCGGTTTCCTTGATACTTAGAGGAAGCAATGACTATATGCT
TGATGAGATGGAGAGAGCCCTGCATGATGCTATATGTACTGTCAAGAGGA
CCCTTG