FC931571

Overview
NameFC931571
Unique NameFC931571
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15354 contig Ccv1_Contig15354:1..511. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931571 vs. ExPASy Swiss-Prot
Match: RL44_GOSHI (60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3)

HSP 1 Score: 224.942 bits (572), Expect = 1.609e-58
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 3
Query:   63 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 377
            MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct:    1 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105          
BLAST of FC931571 vs. ExPASy Swiss-Prot
Match: RL36A_ARATH (60S ribosomal protein L36a OS=Arabidopsis thaliana GN=RPL36AA PE=2 SV=3)

HSP 1 Score: 213.001 bits (541), Expect = 6.328e-55
Identity = 98/105 (93.33%), Postives = 101/105 (96.19%), Query Frame = 3
Query:   63 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 377
            MVN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKGTSLF
Sbjct:    1 MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105          
BLAST of FC931571 vs. ExPASy Swiss-Prot
Match: RL44_PHARH (60S ribosomal protein L44 OS=Phaffia rhodozyma GN=RPL44 PE=3 SV=3)

HSP 1 Score: 180.644 bits (457), Expect = 3.480e-45
Identity = 81/104 (77.88%), Postives = 92/104 (88.46%), Query Frame = 3
Query:   63 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 374
            MVNVPKT++TYCK K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK KG ++
Sbjct:    1 MVNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECSVCKYKMQMTLKRCKHFELGGDKKTKGAAI 104          
BLAST of FC931571 vs. ExPASy Swiss-Prot
Match: RL44_CRYNE (60S ribosomal protein L44 OS=Cryptococcus neoformans GN=RPL44 PE=3 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 5.936e-45
Identity = 81/104 (77.88%), Postives = 92/104 (88.46%), Query Frame = 3
Query:   63 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 374
            MVN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +G ++
Sbjct:    1 MVNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECTVCKTKHQLALKRCKHFELGGDKKQRGAAI 104          
BLAST of FC931571 vs. ExPASy Swiss-Prot
Match: RL44_COPCI (60S ribosomal protein L44 OS=Coprinopsis cinerea GN=RPL44 PE=3 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 1.322e-44
Identity = 80/104 (76.92%), Postives = 92/104 (88.46%), Query Frame = 3
Query:   63 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 374
            MVN+PKT++TYCK K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GG+KK KG +L
Sbjct:    1 MVNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKGAAL 104          
BLAST of FC931571 vs. ExPASy Swiss-Prot
Match: RL44_COPC7 (60S ribosomal protein L44 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=RPL44 PE=3 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 1.322e-44
Identity = 80/104 (76.92%), Postives = 92/104 (88.46%), Query Frame = 3
Query:   63 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 374
            MVN+PKT++TYCK K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GG+KK KG +L
Sbjct:    1 MVNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKGAAL 104          
BLAST of FC931571 vs. ExPASy Swiss-Prot
Match: RL44_PICJA (60S ribosomal protein L44 OS=Pichia jadinii GN=RPL44 PE=3 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 1.727e-44
Identity = 83/104 (79.81%), Postives = 91/104 (87.50%), Query Frame = 3
Query:   63 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 374
            MVNVPKT++TYCK KECRKHT HKVTQYK GK SL AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GGDKK KG +L
Sbjct:    1 MVNVPKTRRTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLALKRCKHFELGGDKKQKGQAL 104          
BLAST of FC931571 vs. ExPASy Swiss-Prot
Match: RL44_PICCI (60S ribosomal protein L44 OS=Pichia ciferrii GN=RPL44 PE=3 SV=3)

HSP 1 Score: 178.333 bits (451), Expect = 1.727e-44
Identity = 83/104 (79.81%), Postives = 91/104 (87.50%), Query Frame = 3
Query:   63 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 374
            MVNVPKT+KTYCK KECRKHT HKVTQYK GK SL AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GGD+K KG +L
Sbjct:    1 MVNVPKTRKTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLSLKRCKHFELGGDRKQKGQAL 104          
BLAST of FC931571 vs. ExPASy Swiss-Prot
Match: RL44_DEBHA (60S ribosomal protein L44 OS=Debaryomyces hansenii GN=RPL44 PE=3 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 5.025e-44
Identity = 82/104 (78.85%), Postives = 90/104 (86.54%), Query Frame = 3
Query:   63 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 374
            MVNVPKT++TYCK KECRKHT HKVTQYK GK SL AQGKRRYDRKQ GYGGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GGDKK KG +L
Sbjct:    1 MVNVPKTRRTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQKGYGGQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLSLKRCKHFELGGDKKQKGQAL 104          
BLAST of FC931571 vs. ExPASy Swiss-Prot
Match: RL44_CANGY (60S ribosomal protein L44 OS=Candida glycerinogenes GN=RPL44 PE=3 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 6.563e-44
Identity = 81/104 (77.88%), Postives = 90/104 (86.54%), Query Frame = 3
Query:   63 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 374
            MVNVPKT+KTYCK K+C+KHT HKVTQYK GK SL +QGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK KG +L
Sbjct:    1 MVNVPKTRKTYCKGKQCKKHTQHKVTQYKAGKASLYSQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECVACKTKLQLSLKRCKHFELGGDKKQKGAAL 104          
The following BLAST results are available for this feature:
BLAST of FC931571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL44_GOSHI1.609e-58100.0060S ribosomal protein L44 OS=Gossypium hirsutum GN... [more]
RL36A_ARATH6.328e-5593.3360S ribosomal protein L36a OS=Arabidopsis thaliana... [more]
RL44_PHARH3.480e-4577.8860S ribosomal protein L44 OS=Phaffia rhodozyma GN=... [more]
RL44_CRYNE5.936e-4577.8860S ribosomal protein L44 OS=Cryptococcus neoforma... [more]
RL44_COPCI1.322e-4476.9260S ribosomal protein L44 OS=Coprinopsis cinerea G... [more]
RL44_COPC71.322e-4476.9260S ribosomal protein L44 OS=Coprinopsis cinerea (... [more]
RL44_PICJA1.727e-4479.8160S ribosomal protein L44 OS=Pichia jadinii GN=RPL... [more]
RL44_PICCI1.727e-4479.8160S ribosomal protein L44 OS=Pichia ciferrii GN=RP... [more]
RL44_DEBHA5.025e-4478.8560S ribosomal protein L44 OS=Debaryomyces hansenii... [more]
RL44_CANGY6.563e-4477.8860S ribosomal protein L44 OS=Candida glycerinogene... [more]

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Properties
Property NameValue
Genbank descriptionC34106F03EF PostHarvP1 Citrus clementina cDNA clone C34106F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931571 ID=FC931571; Name=FC931571; organism=Citrus clementina; type=EST; length=511bp
GACCCTTCGGCAGCAGTTGGAAGTTACGAAGAGCTCTCTCGTCGTCGCCG
CAGCCGGCCATCATGGTGAATGTTCCCAAGACTAAGAAGACTTACTGCAA
GAGCAAGGAGTGCAGAAAGCACACCTTGCACAAGGTGACACAGTACAAGA
AGGGCAAGGACAGTCTTGCTGCTCAAGGGAAGAGACGGTATGATCGCAAG
CAGTCTGGCTATGGCGGTCAGACCAAGCCTGTCTTCCACAAGAAGGCTAA
GACCACCAAGAAGATTGTGCTGAGGCTCCAATGCCAGGGTTGCAAGCATG
TGTCTCAACATCCCATCAAGAGGTGCAAGCACTTTGAAATTGGTGGAGAC
AAGAAGGGAAAGGGAACATCTCTTTTCTAAATGCCTTTATTTTTGTTTTT
ATGCTTTTTACTTTGCTGCACTTGATGGAACATTACCCAGTATGAGAATA
TTTGTTTTAGTTTTGTTGGGTTAGTTTGATGCTGTTAATTTAAAACTTGA
AGCGGTTGTTT
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