FC931575

Overview
NameFC931575
Unique NameFC931575
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931575_ssr35 microsatellite FC931575_ssr35:35..52. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15355 contig Ccv1_Contig15355:1..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1788_METFK (UPF0061 protein Mfla_1788 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=Mfla_1788 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.085e-30
Identity = 63/125 (50.40%), Postives = 89/125 (71.20%), Query Frame = 2
Query:  293 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            L +D+ F+RELPGDP T +  R+V  AC+++V P++ V +P+L+A+S  + ++LEL  +E   P +    +G   + G  PYA CYGGHQFG WAGQLGDGRAI+LGE++N + +RWELQLK  G
Sbjct:    2 LTFDNRFLRELPGDPETSNQLRQVYGACWSRVMPTS-VSSPKLLAYSHEMLEALELSEEEIRSPAWVDALAGNGLMPGMEPYAACYGGHQFGHWAGQLGDGRAISLGEVVNRQGQRWELQLKGAG 125          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1574_AZOSB (UPF0061 protein azo1574 OS=Azoarcus sp. (strain BH72) GN=azo1574 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.305e-29
Identity = 69/128 (53.91%), Postives = 81/128 (63.28%), Query Frame = 2
Query:  284 LEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            +  L +D+ FVRELP DP T    R+V  A Y++V+P+  V  P LVA S  VA  L  D  +   P+F   F G   L G  PYA CYGGHQFG WAGQLGDGRAITLGE+LN +  RWELQLK  G
Sbjct:    1 MRPLVFDNRFVRELPADPETGPHTRQVAGASYSRVNPTP-VAAPHLVAHSAEVAALLGWDESDIASPEFAEVFGGNRLLDGMEPYAACYGGHQFGNWAGQLGDGRAITLGEVLNGQGGRWELQLKGAG 127          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y3800_AZOSE (UPF0061 protein AZOSEA38000 OS=Azoarcus sp. (strain EbN1) GN=AZOSEA38000 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.010e-29
Identity = 66/132 (50.00%), Postives = 82/132 (62.12%), Query Frame = 2
Query:  284 LEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSE----RWELQLKELG 667
            +++L  D+ FV ELPGDP      R+V  ACY++V P+  V  P L+AWS  VA  L  D  +   P+F   F+G   + G  PYA CYGGHQFG WAGQLGDGRAITLGE +  + +    RWELQLK  G
Sbjct:    1 MKNLVLDNRFVHELPGDPNPSPDVRQVHGACYSRVMPTP-VSAPHLIAWSPEVAALLGFDESDVRSPEFAAVFAGNALMPGMEPYAACYGGHQFGNWAGQLGDGRAITLGEAVTTRGDGHTGRWELQLKGAG 131          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y3822_GEMAT (UPF0061 protein GAU_3822 OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=GAU_3822 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.683e-28
Identity = 63/128 (49.22%), Postives = 82/128 (64.06%), Query Frame = 2
Query:  284 LEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            ++ L +D+ FV ELPGDP   +  R+VL A ++ V P+  V  PQL+A +  VA  L   P++   P+F   F G   L G  P+A CYGGHQFG WAGQLGDGRAI+LGE++    +RWELQLK  G
Sbjct:    1 MQTLRFDNRFVDELPGDPDPRNQRRQVLGAAWSAVQPTP-VTAPQLLAVAPDVAAMLGFSPEQTASPEFAAVFGGNALLEGMRPWAACYGGHQFGQWAGQLGDGRAISLGELVTTAGDRWELQLKGAG 127          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1510_NITMU (UPF0061 protein Nmul_A1510 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=Nmul_A1510 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.817e-27
Identity = 66/137 (48.18%), Postives = 90/137 (65.69%), Query Frame = 2
Query:  275 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPL-----FFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELGR 670
            L  L D  +D+ FVR+LPGDP T ++PR+V +A YT+VSP+  V +P+L+AW++ V + L +      RP  P+       +G   L    PYA  YGGHQFG WAGQLGDGRAITLGE+++   +R+ELQLK  G+
Sbjct:   15 LPDLFDARFDNRFVRQLPGDPETRNVPRQVRNAGYTQVSPTP-VRSPRLLAWADEVGEMLGI-----ARPASPVSPAVEVLAGNRILPSMQPYAARYGGHQFGHWAGQLGDGRAITLGELISPNDKRYELQLKGAGK 145          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y683_TOLAT (UPF0061 protein Tola_0683 OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=Tola_0683 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.826e-26
Identity = 65/125 (52.00%), Postives = 84/125 (67.20%), Query Frame = 2
Query:  293 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            L++D+ F+RELPGDP T + PR+V  A ++ V+P A V  PQL+A S  VA  L +   E ++P +    SG   L G  P+A CYGGHQFG WAGQLGDGRAI+LGE+++    RWELQLK  G
Sbjct:    4 LHFDNRFIRELPGDPLTLNQPRQVHAAFWSAVTP-APVPQPQLIASSAEVAALLGISLAELQQPAWVAALSGNGLLDGMSPFATCYGGHQFGNWAGQLGDGRAISLGELIH-NDLRWELQLKGAG 126          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y9953_RHOBA (UPF0061 protein RB9953 OS=Rhodopirellula baltica GN=RB9953 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.890e-23
Identity = 56/126 (44.44%), Postives = 75/126 (59.52%), Query Frame = 2
Query:  290 DLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            DL +D+ F R+LP D    +  R+V  A +++V P+  V  P+ VA S+ VA+ + LDPK     +     +G     G  P+A CYGGHQFG WAGQLGDGRAI LGE++    + W LQLK  G
Sbjct:    4 DLTFDNRFTRDLPADTEPRNFTRQVHQAGFSRVKPTP-VSAPKWVAGSKEVAELIGLDPKWLGSAELTEVLAGNALADGMDPFAMCYGGHQFGNWAGQLGDGRAINLGEVVTADEKHWTLQLKGAG 128          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y2284_XANCP (UPF0061 protein XCC2284 OS=Xanthomonas campestris pv. campestris GN=XCC2284 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.721e-21
Identity = 59/125 (47.20%), Postives = 73/125 (58.40%), Query Frame = 2
Query:  293 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            L +D+    ELPGDP      REVL A ++ V P+  V  P L+A+S  VA  L L  ++   P F   F G     G  P+A  YGGHQFG WAGQLGDGRAI+LGE + +   R+ELQLK  G
Sbjct:    4 LQFDNRLRAELPGDPEEGPRRREVL-AAWSAVQPTP-VAAPTLLAYSADVAQRLGLRAEDLASPRFAEVFGGNALYPGMQPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGVDGGRYELQLKGAG 126          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1992_XYLFT (UPF0061 protein PD_1992 OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=PD_1992 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.721e-21
Identity = 58/125 (46.40%), Postives = 73/125 (58.40%), Query Frame = 2
Query:  293 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            L +++ F+  LP DP      R+VL A +++V+P+  V  P L+A+S  VA  L  D +E   P F   FSG     G  PYA  YGGHQFG W GQLGDGR ITLGE+L      +ELQLK  G
Sbjct:    4 LRFNNRFIDVLPCDPEVSLRSRQVLEA-WSRVAPTP-VPMPCLLAYSSEVAAILNFDAEELVTPRFVEVFSGNALYTGMQPYAVNYGGHQFGQWVGQLGDGRVITLGELLGADGVYYELQLKGAG 126          
BLAST of FC931575 vs. ExPASy Swiss-Prot
Match: Y1831_XANC8 (UPF0061 protein XC_1831 OS=Xanthomonas campestris pv. campestris (strain 8004) GN=XC_1831 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.721e-21
Identity = 59/125 (47.20%), Postives = 73/125 (58.40%), Query Frame = 2
Query:  293 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKELG 667
            L +D+    ELPGDP      REVL A ++ V P+  V  P L+A+S  VA  L L  ++   P F   F G     G  P+A  YGGHQFG WAGQLGDGRAI+LGE + +   R+ELQLK  G
Sbjct:    4 LQFDNRLRAELPGDPEEGPRRREVL-AAWSAVQPTP-VAAPTLLAYSADVAQRLGLRAEDLASPRFAEVFGGNALYPGMQPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGVDGGRYELQLKGAG 126          
The following BLAST results are available for this feature:
BLAST of FC931575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
Y1788_METFK2.085e-3050.40UPF0061 protein Mfla_1788 OS=Methylobacillus flage... [more]
Y1574_AZOSB2.305e-2953.91UPF0061 protein azo1574 OS=Azoarcus sp. (strain BH... [more]
Y3800_AZOSE3.010e-2950.00UPF0061 protein AZOSEA38000 OS=Azoarcus sp. (strai... [more]
Y3822_GEMAT9.683e-2849.22UPF0061 protein GAU_3822 OS=Gemmatimonas aurantiac... [more]
Y1510_NITMU2.817e-2748.18UPF0061 protein Nmul_A1510 OS=Nitrosospira multifo... [more]
Y683_TOLAT1.826e-2652.00UPF0061 protein Tola_0683 OS=Tolumonas auensis (st... [more]
Y9953_RHOBA1.890e-2344.44UPF0061 protein RB9953 OS=Rhodopirellula baltica G... [more]
Y2284_XANCP6.721e-2147.20UPF0061 protein XCC2284 OS=Xanthomonas campestris ... [more]
Y1992_XYLFT6.721e-2146.40UPF0061 protein PD_1992 OS=Xylella fastidiosa (str... [more]
Y1831_XANC86.721e-2147.20UPF0061 protein XC_1831 OS=Xanthomonas campestris ... [more]

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Properties
Property NameValue
Genbank descriptionC34106F07EF PostHarvP1 Citrus clementina cDNA clone C34106F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931575 ID=FC931575; Name=FC931575; organism=Citrus clementina; type=EST; length=691bp
CTCAACTAAACCACACCTCCTCTTCTCTTCACTCTCTTCTTCTTCTTCTT
CTCTCCGCCCTCGCCTCCCCAAATTCCCGTTCTACCCCGCCTACTTTACA
AAGTCTCCATCCTGTCCTTCCATCGCATGCCACGTCAGCACGACAGGCGG
CGGCGGTGCTGCGCAGATGGAGTCGAGTGCGTCTGTCGATTCGGTGACGC
ATGATTTGAAGAATCAGAGATTGGATACGGAAACGGAAACGGACGGCGGA
GATGAGAGCAAGATGACGAAGAAGCTGAAAGCTCTTGAGGATCTGAATTG
GGACCACTCGTTTGTTCGAGAGTTGCCTGGTGATCCCAGGACTGATTCTA
TCCCTCGTGAGGTATTGCATGCCTGTTATACTAAAGTTTCTCCGTCAGCT
GAAGTAGAAAATCCTCAGCTTGTTGCGTGGTCAGAATCAGTGGCCGATTC
TCTTGAGTTGGATCCTAAAGAATTTGAAAGACCAGATTTTCCCCTCTTTT
TTTCTGGGGCTACTCCTTTGGCGGGAGCGGTGCCATATGCTCAATGCTAC
GGTGGACATCAATTTGGCATGTGGGCTGGTCAGCTGGGTGATGGTCGGGC
AATAACTCTTGGCGAGATCCTGAATTTGAAGTCGGAAAGGTGGGAATTGC
AGCTTAAGGAGCTGGGAAGACTCCATATAGCCGCTTTGCTG
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