FC931576

Overview
NameFC931576
Unique NameFC931576
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931576_ssr123 microsatellite FC931576_ssr123:123..140. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15356 contig Ccv1_Contig15356:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931576 vs. ExPASy Swiss-Prot
Match: 6PGD_SYNE7 (6-phosphogluconate dehydrogenase, decarboxylating OS=Synechococcus elongatus (strain PCC 7942) GN=gnd PE=1 SV=4)

HSP 1 Score: 172.555 bits (436), Expect = 1.895e-42
Identity = 90/173 (52.02%), Postives = 122/173 (70.52%), Query Frame = 3
Query:  177 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETV-ERAKKEGDLPLFGFLDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVT 692
            L + GL GLAVMG+NLALNI   GF ++VYNRT  K +  + +RA+ +  +P +     E FV S+++PR I+++VKAG PVD  ++ L   ++ GD IIDGGN  + +TERR K +  LGL ++GMGVSGGEEGA +GPSLMPGG+  AY+ +E I+  +AAQV D GPCVT
Sbjct:    3 LQQFGLIGLAVMGENLALNIERNGFSLTVYNRTAEKTEAFMADRAQGKNIVPAYSL---EDFVASLERPRRILVMVKAGGPVDAVVEQLKPLLDPGDLIIDGGNSLFTDTERRVKDLEALGLGFMGMGVSGGEEGALNGPSLMPGGTQAAYEAVEPIVRSIAAQV-DDGPCVT 171          
BLAST of FC931576 vs. ExPASy Swiss-Prot
Match: 6PGD_CHLMU (6-phosphogluconate dehydrogenase, decarboxylating OS=Chlamydia muridarum GN=gnd PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.515e-42
Identity = 88/168 (52.38%), Postives = 122/168 (72.62%), Query Frame = 3
Query:  186 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGD-LPLFGFLDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPC 686
            IGL GLAVMG+NL LN+ + GF +SVYNR+  K +E +   K+ G+ + L GF   E FV S+++PR I++++KAGAPVDE I +L  ++E+GD +IDGGN +Y ++ERR   + + G+L++GMGVSGGEEGAR GPS+MPGG+ EA+  I  I   +AAQV D  PC
Sbjct:    6 IGLIGLAVMGKNLVLNMIDHGFAVSVYNRSPEKTEEFL---KEHGENISLQGFTAIEEFVQSLKRPRKIMIMIKAGAPVDEMISSLLPFLEEGDILIDGGNSYYLDSERRYIDLKKKGILFVGMGVSGGEEGARKGPSIMPGGNIEAWPVIAPIFQSIAAQV-DGQPC 169          
BLAST of FC931576 vs. ExPASy Swiss-Prot
Match: 6PGD_CHLPN (6-phosphogluconate dehydrogenase, decarboxylating OS=Chlamydia pneumoniae GN=gnd PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.202e-42
Identity = 84/169 (49.70%), Postives = 120/169 (71.01%), Query Frame = 3
Query:  180 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFLDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPC 686
            T IGL GLAVMG+NL LN+ + GF +SVYNRT  K  + ++      +L   GF   E FVNS+++PR I+++++AG PVD++I  L  ++E GD IIDGGN +++++ERR K + E G+L+LG+G+SGGEEGARHGPS+MPGG+ EA+  +  I   +AA+V    PC
Sbjct:    3 TNIGLIGLAVMGKNLVLNMIDHGFSVSVYNRTPEKTRDFLKEYPNHREL--VGFESLEDFVNSLERPRKIMLMIQAGKPVDQSIHALLPFLEPGDVIIDGGNSYFKDSERRCKELQEKGILFLGVGISGGEEGARHGPSIMPGGNPEAWPLVAPIFQSIAAKV-QGRPC 168          
BLAST of FC931576 vs. ExPASy Swiss-Prot
Match: 6PGD2_BACSU (6-phosphogluconate dehydrogenase, decarboxylating 2 OS=Bacillus subtilis GN=yqjI PE=1 SV=4)

HSP 1 Score: 170.244 bits (430), Expect = 9.407e-42
Identity = 85/170 (50.00%), Postives = 123/170 (72.35%), Query Frame = 3
Query:  183 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFLDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVT 692
            +IG+ GLAVMG+NLALNI  +GF +SVYNR++SK +E ++ AK +    + G    E FV S++ PR I+++VKAG   D TI++L  ++EK D +IDGGN +Y++T+RR K +AE G+ ++G GVSGGEEGA  GPS+MPGG  EA++ ++ IL  ++A+V D  PC T
Sbjct:    5 QIGVIGLAVMGKNLALNIESRGFSVSVYNRSSSKTEEFLQEAKGKN---VVGTYSIEEFVQSLETPRKILLMVKAGTATDATIQSLLPHLEKDDILIDGGNTYYKDTQRRNKELAESGIHFIGTGVSGGEEGALKGPSIMPGGQKEAHELVKPILEAISAKV-DGEPCTT 170          
BLAST of FC931576 vs. ExPASy Swiss-Prot
Match: 6PGD_SCHPO (6-phosphogluconate dehydrogenase, decarboxylating OS=Schizosaccharomyces pombe GN=SPBC660.16 PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.096e-41
Identity = 89/172 (51.74%), Postives = 119/172 (69.19%), Query Frame = 3
Query:  171 KQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFLDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPC 686
            K++   GL GLAVMGQNL LN A+KGF +  YNRTTS+VDE +    K   +   G    E FV+ ++KPRV I+LVKAG PVD  I+ L+  +EKGD I+DGGN  Y +T RR + +A+ G+L++G GVSGGEEGAR+GPSLMPGG+  A+  I+ I   +AA+  ++ PC
Sbjct:    4 KEVADFGLIGLAVMGQNLILNGADKGFTVCCYNRTTSRVDEFLANEAKGKSI--VGAHSLEEFVSKLKKPRVCILLVKAGKPVDYLIEGLAPLLEKGDIIVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYGPSLMPGGNPAAWPRIKPIFQTLAAKAGNNEPC 173          
BLAST of FC931576 vs. ExPASy Swiss-Prot
Match: 6PGD_SYNY3 (6-phosphogluconate dehydrogenase, decarboxylating OS=Synechocystis sp. (strain PCC 6803) GN=gnd PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.737e-41
Identity = 89/170 (52.35%), Postives = 117/170 (68.82%), Query Frame = 3
Query:  189 GLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFLDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQV--PDSGPCVT 692
            G+ GLAVMG+NLALN+  +GFPI+V+NR+ +K ++ +       D+        E FV  +++PR I+++VKAG PVD  I  L   +E+GD IIDGGN  YE+TERR K +   GL ++GMGVSGGEEGA  GPSLMPGG+  AYK +E IL K+AAQV  PD+  CVT
Sbjct:   14 GVIGLAVMGENLALNVESRGFPIAVFNRSPNKTEKFMAERAVGKDIK--AAYTVEEFVQLLERPRKILVMVKAGGPVDAVINELKPLLEEGDMIIDGGNSLYEDTERRTKDLEATGLGFVGMGVSGGEEGALLGPSLMPGGTPAAYKELEPILTKIAAQVEDPDNPACVT 181          
BLAST of FC931576 vs. ExPASy Swiss-Prot
Match: 6PGD_HAEIN (6-phosphogluconate dehydrogenase, decarboxylating OS=Haemophilus influenzae GN=gnd PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.737e-41
Identity = 83/167 (49.70%), Postives = 117/167 (70.06%), Query Frame = 3
Query:  186 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFLDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPC 686
            IG+ GLAVMGQNL LN+ + GF +  YNRTTSKVDE ++ A K  ++   G    E     ++KPR ++++V+AG  VD+ I+ L  ++E+GD IIDGGN  Y +T RR KA+AE G+ ++G GVSGGEEGARHGPS+MPGG+ EA++Y++ I   ++A+     PC
Sbjct:    7 IGVIGLAVMGQNLILNMNDHGFKVVAYNRTTSKVDEFLQGAAKGTNI--IGAYSLEDLAAKLEKPRKVMLMVRAGDVVDQFIEALLPHLEEGDIIIDGGNSNYPDTNRRVKALAEKGIRFIGSGVSGGEEGARHGPSIMPGGNQEAWQYVKPIFQAISAKTEQGEPC 171          
BLAST of FC931576 vs. ExPASy Swiss-Prot
Match: 6PGD_CHLTR (6-phosphogluconate dehydrogenase, decarboxylating OS=Chlamydia trachomatis GN=gnd PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.737e-41
Identity = 85/169 (50.30%), Postives = 122/169 (72.19%), Query Frame = 3
Query:  180 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFLDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPC 686
            T IGL GLAVMG+NL LN+ + GF +SVYNR+ +K +E ++   + G L   GF   + FV S+++PR I++++KAGAPVDE I +L  ++E+GD +IDGGN +Y ++E+R   + + G+L++GMGVSGGEEGAR GPS+MPGG+ +A+  I  I   +AAQV D  PC
Sbjct:    5 TDIGLIGLAVMGKNLVLNMVDHGFSVSVYNRSPAKTEEFLKDHGESGALQ--GFTTIQEFVQSLKRPRKIMIMIKAGAPVDEMIASLLPFLEEGDILIDGGNSYYLDSEQRYVDLKKEGILFVGMGVSGGEEGARKGPSIMPGGNIDAWPAIAPIFQSIAAQV-DGRPC 170          
BLAST of FC931576 vs. ExPASy Swiss-Prot
Match: 6PGD_AGGAC (6-phosphogluconate dehydrogenase, decarboxylating OS=Aggregatibacter actinomycetemcomitans GN=gnd PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.358e-40
Identity = 82/167 (49.10%), Postives = 114/167 (68.26%), Query Frame = 3
Query:  186 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFLDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPC 686
            IG+ GLAVMGQNL LN+ + GF +  YNRTTSKVDE +E A K  ++   G    E   N ++KPR ++++V+AG  VD  I  L  ++E GD IIDGGN  Y +T RR  A+ E G+ ++G GVSGGEEGARHGPS+MPGG+ EA+++++ +L  ++A+     PC
Sbjct:    7 IGVIGLAVMGQNLILNMNDHGFKVVAYNRTTSKVDEFLEGAAKGTNI--IGAYSLEDLANKLEKPRKVMLMVRAGEVVDHFIDALLPHLEAGDIIIDGGNSNYPDTNRRVAALREKGIRFIGTGVSGGEEGARHGPSIMPGGNEEAWQFVKPVLQAISAKTEQGEPC 171          
BLAST of FC931576 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAW (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain MW2) GN=gnd PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.952e-40
Identity = 84/170 (49.41%), Postives = 116/170 (68.24%), Query Frame = 3
Query:  183 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFLDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVT 692
            +IG+ GLAVMG+NLA NI  +G+ +SV+NR++ K D  VE +K +   P +     E FVNS++KPR I+++V+AG   D TI +L   ++ GD +IDGGN  Y++T RR KA+A+  + ++GMGVSGGE GA  GPSLMPGG  EAY  + DIL  +AA+  D   CVT
Sbjct:    4 QIGVIGLAVMGKNLAWNIESRGYSVSVFNRSSEKTDLMVEESKGKNIHPTYSL---EEFVNSLEKPRKILLMVQAGKATDATIDSLLPLLDDGDILIDGGNTNYQDTIRRNKALAQSAINFIGMGVSGGEIGALTGPSLMPGGQEEAYNKVADILDAIAAKAKDGASCVT 170          
The following BLAST results are available for this feature:
BLAST of FC931576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
6PGD_SYNE71.895e-4252.026-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CHLMU5.515e-4252.386-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CHLPN7.202e-4249.706-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD2_BACSU9.407e-4250.006-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SCHPO2.096e-4151.746-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SYNY32.737e-4152.356-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_HAEIN2.737e-4149.706-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CHLTR2.737e-4150.306-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_AGGAC1.358e-4049.106-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAAW3.952e-4049.416-phosphogluconate dehydrogenase, decarboxylating ... [more]

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Properties
Property NameValue
Genbank descriptionC34106F08EF PostHarvP1 Citrus clementina cDNA clone C34106F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931576 ID=FC931576; Name=FC931576; organism=Citrus clementina; type=EST; length=709bp
GATTGACGTATTGTATTTTTAATCATTTATTATGTTTATAGAGTCTCTGC
TCTGCTAATCCCAGATCACATTTTGGGTTGATTTGTCTGAATTTTCCTTC
TCTTGTTTTTGCATCAGATTTTAGAAGAAGAAGAAGAAGAATTTTTTAAG
AGGAAGATATGGTTGAGGGCAAACAACTTACGAGAATAGGCCTTGCTGGT
CTGGCGGTCATGGGCCAAAATCTCGCCCTCAACATTGCTGAAAAAGGCTT
TCCCATTTCTGTTTATAACCGAACTACCTCCAAAGTTGATGAGACAGTTG
AAAGAGCTAAAAAGGAGGGAGATCTGCCTTTATTTGGTTTCCTTGATCCT
GAATCGTTTGTCAATTCAATCCAAAAACCTCGGGTGATAATCATGCTTGT
TAAAGCTGGTGCACCTGTTGACGAAACCATTAAGACCCTCTCCGCTTACA
TGGAGAAAGGTGATTGCATCATTGATGGGGGTAATGAGTGGTATGAGAAC
ACCGAGAGAAGAGAGAAAGCCATGGCTGAATTGGGTTTGCTCTACCTTGG
AATGGGAGTTTCAGGTGGTGAAGAGGGTGCAAGACATGGTCCTTCTTTGA
TGCCTGGAGGATCATTCGAGGCTTACAAGTATATTGAAGACATTCTTCTA
AAGGTCGCGGCTCAAGTTCCTGATAGCGGCCCCTGTGTGACTACATTAGC
AAGGTGGAT
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