FC931593

Overview
NameFC931593
Unique NameFC931593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931593_ssr81 microsatellite FC931593_ssr81:81..90. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10204 contig Ccv1_Contig10204:1..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931593 vs. ExPASy Swiss-Prot
Match: THOC4_TAEGU (THO complex subunit 4 OS=Taeniopygia guttata GN=THOC4 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.149e-30
Identity = 70/136 (51.47%), Postives = 94/136 (69.12%), Query Frame = 3
Query:  264 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIXTRTAAPAANVN 671
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+   PA +VN
Sbjct:   67 GRNRPAPYSRPKQLPEKWQHDLFD---SGF-----GAGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSVN 193          
BLAST of FC931593 vs. ExPASy Swiss-Prot
Match: THOC4_BOVIN (THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.501e-30
Identity = 70/136 (51.47%), Postives = 94/136 (69.12%), Query Frame = 3
Query:  264 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIXTRTAAPAANVN 671
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+   PA +VN
Sbjct:   70 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSVN 196          
BLAST of FC931593 vs. ExPASy Swiss-Prot
Match: THOC4_MOUSE (THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=1 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 1.960e-30
Identity = 69/136 (50.74%), Postives = 94/136 (69.12%), Query Frame = 3
Query:  264 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIXTRTAAPAANVN 671
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+   PA ++N
Sbjct:   69 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSIN 195          
BLAST of FC931593 vs. ExPASy Swiss-Prot
Match: REFP2_MOUSE (RNA and export factor-binding protein 2 OS=Mus musculus GN=Refbp2 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.560e-30
Identity = 73/166 (43.98%), Postives = 96/166 (57.83%), Query Frame = 3
Query:  138 MSSALDMSLDDIIKNNKKXXXXXXXXXXXXXXXXXXXXXXNRGANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNI 635
            M+  +DMSLDDIIK N+                         G NR APY+  K     WQHD+F            G    +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++ YDRSGRS GTA+V + RRADA+ A+K+Y  V LDG+PM I++V + I
Sbjct:    1 MADKMDMSLDDIIKLNRNQRRVNRGGGPRRNRPAIARG----GRNRPAPYSRPKPLPDKWQHDLFDSG--------CGGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQI 154          
BLAST of FC931593 vs. ExPASy Swiss-Prot
Match: THOC4_HUMAN (THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=1 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 5.702e-30
Identity = 69/136 (50.74%), Postives = 93/136 (68.38%), Query Frame = 3
Query:  264 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIXTRTAAPAANVN 671
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I  +   PA +VN
Sbjct:   70 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDAQ-RRPAQSVN 196          
BLAST of FC931593 vs. ExPASy Swiss-Prot
Match: THOC4_XENTR (THO complex subunit 4 OS=Xenopus tropicalis GN=thoc4 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.827e-29
Identity = 65/124 (52.42%), Postives = 87/124 (70.16%), Query Frame = 3
Query:  264 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNI 635
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I
Sbjct:   73 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 188          
BLAST of FC931593 vs. ExPASy Swiss-Prot
Match: THO4A_XENLA (THO complex subunit 4-A OS=Xenopus laevis GN=thoc4-A PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.404e-28
Identity = 64/124 (51.61%), Postives = 86/124 (69.35%), Query Frame = 3
Query:  264 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNI 635
            G NR  PY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I
Sbjct:   70 GRNRPTPYSRPKQLPDKWQHDLFD---SGF-----GAGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 185          
BLAST of FC931593 vs. ExPASy Swiss-Prot
Match: THO4B_XENLA (THO complex subunit 4-B OS=Xenopus laevis GN=thoc4-B PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.104e-28
Identity = 63/124 (50.81%), Postives = 85/124 (68.55%), Query Frame = 3
Query:  264 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNI 635
            G NR  PY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+ M I++V + I
Sbjct:   69 GRNRPTPYSRPKQLPDKWQHDLFD---SGF-----GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGSLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRSMNIQLVTSQI 184          
The following BLAST results are available for this feature:
BLAST of FC931593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
THOC4_TAEGU1.149e-3051.47THO complex subunit 4 OS=Taeniopygia guttata GN=TH... [more]
THOC4_BOVIN1.501e-3051.47THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 ... [more]
THOC4_MOUSE1.960e-3050.74THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=... [more]
REFP2_MOUSE2.560e-3043.98RNA and export factor-binding protein 2 OS=Mus mus... [more]
THOC4_HUMAN5.702e-3050.74THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=... [more]
THOC4_XENTR4.827e-2952.42THO complex subunit 4 OS=Xenopus tropicalis GN=tho... [more]
THO4A_XENLA1.404e-2851.61THO complex subunit 4-A OS=Xenopus laevis GN=thoc4... [more]
THO4B_XENLA9.104e-2850.81THO complex subunit 4-B OS=Xenopus laevis GN=thoc4... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34106H03EF PostHarvP1 Citrus clementina cDNA clone C34106H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931593 ID=FC931593; Name=FC931593; organism=Citrus clementina; type=EST; length=673bp
GATCTCAAAACTTTCCTTTGTTCGAGGAAACCCTAAATTTCCTCCTCAGC
CTTCCTCTCTTTCTACTTTTCCTCTTAATTTCTCTCTCTCTTATTACGAT
TTTATCTTTGATTTTCTATTTTCTGTTATAGTAAAAAATGTCAAGCGCTT
TAGATATGTCTCTTGACGATATCATCAAGAACAACAAAAAGTCTGGATCT
GGCAACTTCCGGGGCCGGGGTCGAGGATCCGGACCCGGCCCTGCTCGTCG
CATCCCCAATCGTGGTGCAAACCGTGTGGCGCCGTATACCACCGCCAAAG
CGCCGGAGACGACGTGGCAGCACGATATGTTTGCAGATCAGGTGAGTGCT
TTCCCGGTACAGCAGGCGGGGCGGGCTTCAGCTATAGAGACTGGAACGAA
GCTGTACATATCAAATCTGGATTACGGTGTCTCTAATGAAGACATCAAGG
AACTGTTTTCTGAAGTTGGTGACTTGAAGCGGTACTCAATCCATTATGAT
AGAAGTGGGAGATCAAAGGGAACGGCAGAGGTTGTCTATTCACGACGAGC
AGATGCTGTGGCTGCAGTCAAGAGATACAACAATGTGCAGCTTGATGGGA
AGCCGATGAAAATTGAGATTGTGGGAACAAACATTGNCACCCGTACTGCA
GCTCCAGCTGCTAATGTCAACTT
back to top