FC931606

Overview
NameFC931606
Unique NameFC931606
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12983 contig Ccv1_Contig12983:44..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931606 vs. ExPASy Swiss-Prot
Match: CSN5A_ARATH (COP9 signalosome complex subunit 5a OS=Arabidopsis thaliana GN=CSN5A PE=1 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 1.760e-96
Identity = 170/206 (82.52%), Postives = 186/206 (90.29%), Query Frame = 3
Query:   93 SSIAQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYXPPDEPI 710
            S+IA+KTWELEN+I+++++P        S SD IF+YD+ +QT+FQQEKPW NDPHYFKRVKISALALLKMVVHARSGGTIE+MGLMQGKTDGD IIVMDAFALPVEGTETRVNAQ DAYEYMV+YSQTNK AGRLEN VGWYHSHPGYGCWLSGIDVSTQ LNQQ QEPFLAVVIDPTRTVSAGKVEIGAFRTY +GY PPDEP+
Sbjct:    6 STIARKTWELENSILTVDSPD-------STSDNIFYYDDTSQTRFQQEKPWENDPHYFKRVKISALALLKMVVHARSGGTIEIMGLMQGKTDGDTIIVMDAFALPVEGTETRVNAQDDAYEYMVEYSQTNKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQRLNQQHQEPFLAVVIDPTRTVSAGKVEIGAFRTYSKGYKPPDEPV 204          
BLAST of FC931606 vs. ExPASy Swiss-Prot
Match: CSN5B_ARATH (COP9 signalosome complex subunit 5b OS=Arabidopsis thaliana GN=CSN5B PE=1 SV=2)

HSP 1 Score: 337.806 bits (865), Expect = 3.434e-92
Identity = 166/206 (80.58%), Postives = 185/206 (89.81%), Query Frame = 3
Query:   93 SSIAQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYXPPDEPI 710
            S+IA+KTWELENNI+ +E  PT+S     ASD+IF YD+ +Q K QQEKPW +DP+YFKRV ISALALLKMVVHARSGGTIE+MGLMQGKT+GD IIVMDAFALPVEGTETRVNAQ+DAYEYMV+YSQT+K AGRLEN VGWYHSHPGYGCWLSGIDVSTQMLNQQ+QEPFLAVVIDPTRTVSAGKVEIGAFRTYPEG+   D+ +
Sbjct:    6 SAIARKTWELENNILPVE--PTDS-----ASDSIFHYDDASQAKIQQEKPWASDPNYFKRVHISALALLKMVVHARSGGTIEIMGLMQGKTEGDTIIVMDAFALPVEGTETRVNAQSDAYEYMVEYSQTSKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGHKISDDHV 204          
BLAST of FC931606 vs. ExPASy Swiss-Prot
Match: CSN5_XENTR (COP9 signalosome complex subunit 5 OS=Xenopus tropicalis GN=cops5 PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.553e-79
Identity = 141/204 (69.12%), Postives = 162/204 (79.41%), Query Frame = 3
Query:   93 SSIAQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYXPPDE 704
            SS+AQKTWEL NN+  +++            D I+ YD+  Q +    KPW  D HYFK  K+SALALLKMV+HARSGG +EVMGLM GK DG+ +I+MD+FALPVEGTETRVNAQA AYEYM  Y +  KQ GRLENA+GWYHSHPGYGCWLSGIDVSTQMLNQQFQEPF+AVVIDPTRT+SAGKV +GAFRTYP+GY PPDE
Sbjct:    6 SSVAQKTWELSNNMQEVQS-----------IDEIYKYDKKQQQEILAAKPWTKDHHYFKYCKVSALALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPDE 198          
BLAST of FC931606 vs. ExPASy Swiss-Prot
Match: CSN5_XENLA (COP9 signalosome complex subunit 5 OS=Xenopus laevis GN=cops5 PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.553e-79
Identity = 141/204 (69.12%), Postives = 162/204 (79.41%), Query Frame = 3
Query:   93 SSIAQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYXPPDE 704
            SS+AQKTWEL NN+  +++            D I+ YD+  Q +    KPW  D HYFK  K+SALALLKMV+HARSGG +EVMGLM GK DG+ +I+MD+FALPVEGTETRVNAQA AYEYM  Y +  KQ GRLENA+GWYHSHPGYGCWLSGIDVSTQMLNQQFQEPF+AVVIDPTRT+SAGKV +GAFRTYP+GY PPDE
Sbjct:    4 SSVAQKTWELSNNMQEVQS-----------IDEIYKYDKKQQQEILAAKPWTKDHHYFKYCKVSALALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPDE 196          
BLAST of FC931606 vs. ExPASy Swiss-Prot
Match: CSN5_MOUSE (COP9 signalosome complex subunit 5 OS=Mus musculus GN=Cops5 PE=1 SV=3)

HSP 1 Score: 292.738 bits (748), Expect = 1.267e-78
Identity = 141/204 (69.12%), Postives = 160/204 (78.43%), Query Frame = 3
Query:   93 SSIAQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYXPPDE 704
            S +AQKTWEL NN+            +  + D I+ YD+  Q +    KPW  D HYFK  KISALALLKMV+HARSGG +EVMGLM GK DG+ +I+MD+FALPVEGTETRVNAQA AYEYM  Y +  KQ GRLENA+GWYHSHPGYGCWLSGIDVSTQMLNQQFQEPF+AVVIDPTRT+SAGKV +GAFRTYP+GY PPDE
Sbjct:    6 SGMAQKTWELANNM-----------QEAQSIDEIYKYDKKQQQEILAAKPWTKDHHYFKYCKISALALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPDE 198          
BLAST of FC931606 vs. ExPASy Swiss-Prot
Match: CSN5_HUMAN (COP9 signalosome complex subunit 5 OS=Homo sapiens GN=COPS5 PE=1 SV=4)

HSP 1 Score: 292.738 bits (748), Expect = 1.267e-78
Identity = 141/204 (69.12%), Postives = 160/204 (78.43%), Query Frame = 3
Query:   93 SSIAQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYXPPDE 704
            S +AQKTWEL NN+            +  + D I+ YD+  Q +    KPW  D HYFK  KISALALLKMV+HARSGG +EVMGLM GK DG+ +I+MD+FALPVEGTETRVNAQA AYEYM  Y +  KQ GRLENA+GWYHSHPGYGCWLSGIDVSTQMLNQQFQEPF+AVVIDPTRT+SAGKV +GAFRTYP+GY PPDE
Sbjct:    6 SGMAQKTWELANNM-----------QEAQSIDEIYKYDKKQQQEILAAKPWTKDHHYFKYCKISALALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPDE 198          
BLAST of FC931606 vs. ExPASy Swiss-Prot
Match: CSN5_DANRE (COP9 signalosome complex subunit 5 OS=Danio rerio GN=cops5 PE=2 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 2.161e-78
Identity = 141/204 (69.12%), Postives = 160/204 (78.43%), Query Frame = 3
Query:   93 SSIAQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYXPPDE 704
            SSIA KTWEL           +NS  +  + D I+ YD+  Q +    KPW  D HYFK  K+SALALLKMV+HARSGG +EVMGLM GK DG+ +I+MD+FALPVEGTETRVNAQA AYEYM  Y +  KQ GRLENA+GWYHSHPGYGCWLSGIDVSTQMLNQQFQEPF+AVVIDPTRT+SAGKV +GAFRTYP+GY PPDE
Sbjct:    4 SSIAMKTWEL-----------SNSMQEVQSIDEIYKYDKKQQQEILAAKPWTKDHHYFKYCKLSALALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPDE 196          
BLAST of FC931606 vs. ExPASy Swiss-Prot
Match: CSN5_DROME (COP9 signalosome complex subunit 5 OS=Drosophila melanogaster GN=CSN5 PE=1 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 8.212e-78
Identity = 140/206 (67.96%), Postives = 162/206 (78.64%), Query Frame = 3
Query:   87 MDSSIAQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYXPPDE 704
            MDS  AQKTWELENNI ++ +            D IF YD   Q +    KPW  DPH+FK +KISALALLKMV+HARSGGT+EVMGLM GK + + +IVMDAFALPVEGTETRVNAQA AYEYM  Y +  K+ GR+E+AVGWYHSHPGYGCWLSGIDVSTQMLNQ +QEPF+A+V+DP RTVSAGKV +GAFRTYP+GY PP+E
Sbjct:    1 MDSDAAQKTWELENNIQTLPS-----------CDEIFRYDAEQQRQIIDAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLMLGKVEDNTMIVMDAFALPVEGTETRVNAQAQAYEYMTAYMEAAKEVGRMEHAVGWYHSHPGYGCWLSGIDVSTQMLNQTYQEPFVAIVVDPVRTVSAGKVCLGAFRTYPKGYKPPNE 195          
BLAST of FC931606 vs. ExPASy Swiss-Prot
Match: CSN5_DICDI (COP9 signalosome complex subunit 5 OS=Dictyostelium discoideum GN=csn5 PE=1 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 3.815e-75
Identity = 133/201 (66.17%), Postives = 159/201 (79.10%), Query Frame = 3
Query:  102 AQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYXPPDE 704
            A KT+ELENNI +++             D +F YD     +F Q KPW  DPHYFK VKISA+ALLKMV+HARSGG +EVMG++ GK + + +I+MD+FALPVEGTETRVNAQ +AYEYMV+Y +  KQ GRLENA+GWYHSHPGYGCWLSGIDV TQ +NQQ+ EP+L +VIDPTRTVSAGKVEIGAFRTYP+GY PP+E
Sbjct:    9 ALKTFELENNIQTID------------HDQLFKYDPQQYQQFLQSKPWSKDPHYFKHVKISAIALLKMVMHARSGGKLEVMGMLMGKVENNTMIIMDSFALPVEGTETRVNAQVEAYEYMVEYLELIKQTGRLENALGWYHSHPGYGCWLSGIDVGTQSVNQQYSEPWLGIVIDPTRTVSAGKVEIGAFRTYPQGYKPPNE 197          
BLAST of FC931606 vs. ExPASy Swiss-Prot
Match: CSN5_CAEEL (COP9 signalosome complex subunit 5 OS=Caenorhabditis elegans GN=csn-5 PE=1 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 5.156e-72
Identity = 126/208 (60.58%), Postives = 156/208 (75.00%), Query Frame = 3
Query:   81 VSMDSSIAQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYXPPDE 704
            V   SS+ Q+ WE ENN+ ++              D+IF Y+   Q + +  KPW  DPHYFK++KISA+ALLKM +HA+ GG +E+MGL+QG+ D ++ I++D FALPVEGTETRVNAQA AYEYM  YS+     GR E  VGWYHSHPGYGCWLSGIDVSTQ LNQ+FQEP++A+VIDP RT+SAGKV+IGAFRTYPEGY PPD+
Sbjct:    6 VKPSSSVPQRNWEKENNVQNV--------------DSIFEYNNKQQVEIRNAKPWDKDPHYFKQIKISAIALLKMTMHAKRGGNLEIMGLLQGRIDANSFIILDVFALPVEGTETRVNAQAQAYEYMTVYSEMCDTEGRKEKVVGWYHSHPGYGCWLSGIDVSTQTLNQKFQEPWVAIVIDPLRTMSAGKVDIGAFRTYPEGYRPPDD 199          
The following BLAST results are available for this feature:
BLAST of FC931606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
CSN5A_ARATH1.760e-9682.52COP9 signalosome complex subunit 5a OS=Arabidopsis... [more]
CSN5B_ARATH3.434e-9280.58COP9 signalosome complex subunit 5b OS=Arabidopsis... [more]
CSN5_XENTR2.553e-7969.12COP9 signalosome complex subunit 5 OS=Xenopus trop... [more]
CSN5_XENLA2.553e-7969.12COP9 signalosome complex subunit 5 OS=Xenopus laev... [more]
CSN5_MOUSE1.267e-7869.12COP9 signalosome complex subunit 5 OS=Mus musculus... [more]
CSN5_HUMAN1.267e-7869.12COP9 signalosome complex subunit 5 OS=Homo sapiens... [more]
CSN5_DANRE2.161e-7869.12COP9 signalosome complex subunit 5 OS=Danio rerio ... [more]
CSN5_DROME8.212e-7867.96COP9 signalosome complex subunit 5 OS=Drosophila m... [more]
CSN5_DICDI3.815e-7566.17COP9 signalosome complex subunit 5 OS=Dictyosteliu... [more]
CSN5_CAEEL5.156e-7260.58COP9 signalosome complex subunit 5 OS=Caenorhabdit... [more]

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Properties
Property NameValue
Genbank descriptionC34107A06EF PostHarvP1 Citrus clementina cDNA clone C34107A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931606 ID=FC931606; Name=FC931606; organism=Citrus clementina; type=EST; length=712bp
GGTTGGTGTTGTTGGTGTTCGTCTTGTTTGTTGTTCCAGACAGTGTAGGG
TGTAGGCAGAGAGGGAGAGAAAACAACATAGTATCGATGGACTCGTCAAT
AGCGCAAAAGACATGGGAACTGGAAAACAACATAGTATCGATGGAGACAC
CGCCGACAAACTCAACAGCCGACACGTCAGCATCGGACGCGATTTTCTTC
TACGACGAAGGGGCGCAGACCAAGTTCCAGCAAGAGAAGCCCTGGGTCAA
TGACCCTCACTACTTCAAGCGCGTGAAGATCTCCGCACTCGCCCTCCTCA
AGATGGTCGTCCATGCGCGATCCGGTGGGACCATCGAGGTCATGGGCCTT
ATGCAAGGCAAAACCGACGGCGACGCCATCATTGTCATGGACGCCTTTGC
TTTGCCCGTTGAAGGTACCGAAACCAGGGTTAATGCTCAGGCCGATGCTT
ATGAATATATGGTCGATTATTCCCAAACCAACAAACAGGCCGGACGTCTG
GAGAATGCTGTTGGGTGGTACCATTCACATCCTGGCTATGGATGCTGGCT
TTCGGGTATTGATGTTTCAACTCAAATGCTTAATCAGCAGTTTCAGGAGC
CATTTTTGGCTGTTGTGATTGATCCTACTAGGACTGTTTCTGCTGGGAAA
GTTGAGATTGGAGCTTTCAGGACGTATCCTGAAGGATACNAGCCTCCGGA
TGAACCCATCTC
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