FC931610

Overview
NameFC931610
Unique NameFC931610
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3764 contig Ccv1_Contig3764:158..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931610 vs. ExPASy Swiss-Prot
Match: CCT15_ARATH (Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 58/120 (48.33%), Postives = 73/120 (60.83%), Query Frame = 3
Query:  345 EVSTSMSCKRDRSKLEDDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRXXXXXXXXXXXXKSEETPRPLNDVLRASSE 704
            E   S   +    K E+    +  R EIE  SPSR DGID  +ET+LR SYC F+Q+LG+RL++PQ TI TA++ CHRFF R+SHA +DR            K EETPRPL DV+  S E
Sbjct:   13 ESGVSSHSRNSHEKQEEVSRWYFGRKEIEENSPSRLDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFFRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIFVSYE 132          
BLAST of FC931610 vs. ExPASy Swiss-Prot
Match: CCT14_ORYSJ (Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.833e-24
Identity = 54/99 (54.55%), Postives = 70/99 (70.71%), Query Frame = 3
Query:  408 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRXXXXXXXXXXXXKSEETPRPLNDVLRASSE 704
            + SR EIE  SPSR+DGID  +E++LR SYC F+Q+LG+RL++PQ TI TA+V CHRF++R+SHA +DR            K EETPRPL DV+  S E
Sbjct:   37 YFSRKEIEENSPSRRDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFYLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVILVSYE 135          
BLAST of FC931610 vs. ExPASy Swiss-Prot
Match: CCT12_ARATH (Cyclin-T1-2 OS=Arabidopsis thaliana GN=CYCT1-2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.127e-24
Identity = 61/110 (55.45%), Postives = 72/110 (65.45%), Query Frame = 3
Query:  381 SKLEDDE--PVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRXXXXXXXXXXXXKSEETPRPLNDVLRASSE 704
            S L DDE  P F SR+EIER SPSR+DGID   ET LR SYC F++ LG RL++PQ TI TA+  CHRFF+R+SHA +DR            K EETP  L DV+ AS E
Sbjct:   21 SNLHDDEIIPWFFSREEIERNSPSRRDGIDLKTETRLRDSYCTFLEILGERLKVPQVTIATAIFFCHRFFLRQSHAKNDRQTIATVCMLLAGKVEETPVTLEDVIIASYE 130          
BLAST of FC931610 vs. ExPASy Swiss-Prot
Match: CCT14_ARATH (Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.333e-24
Identity = 56/120 (46.67%), Postives = 73/120 (60.83%), Query Frame = 3
Query:  345 EVSTSMSCKRDRSKLEDDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRXXXXXXXXXXXXKSEETPRPLNDVLRASSE 704
            E   S   +    K ++    +  R EIE  SPSR D ID  +ET+LR SYC F+Q+LG+RL++PQ TI TA++ CHRFF+R+SHA +DR            K EETPRPL DV+  S E
Sbjct:   13 ESGVSSYSRNSNEKQDEVARWYFGRKEIEENSPSRLDSIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHARNDRRTIATVCMFLAGKVEETPRPLKDVIVVSYE 132          
BLAST of FC931610 vs. ExPASy Swiss-Prot
Match: CCT13_ORYSJ (Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.552e-23
Identity = 54/99 (54.55%), Postives = 69/99 (69.70%), Query Frame = 3
Query:  408 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRXXXXXXXXXXXXKSEETPRPLNDVLRASSE 704
            + SR EIE  S SR+DGID  +E++LR SYC F+Q+LG+RL++PQ TI TA+V CHRFF+R+SHA +DR            K EETPRPL DV+  S E
Sbjct:   38 YFSRKEIEENSLSRRDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFFLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVILISYE 136          
BLAST of FC931610 vs. ExPASy Swiss-Prot
Match: CCT13_ARATH (Cyclin-T1-3 OS=Arabidopsis thaliana GN=CYCT1-3 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21
Identity = 50/99 (50.51%), Postives = 68/99 (68.69%), Query Frame = 3
Query:  408 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRXXXXXXXXXXXXKSEETPRPLNDVLRASSE 704
            + SR+EIERFSPSRKDGID ++E+ LR SYC F+Q LG++L + Q TI  AMV+CHRF++R+SHA +D             K+E+ P  L+ V+ AS E
Sbjct:   35 YFSREEIERFSPSRKDGIDLVKESFLRSSYCTFLQRLGMKLHVSQVTISCAMVMCHRFYMRQSHAKNDWQTIATSSLFLACKAEDEPCQLSSVVVASYE 133          
BLAST of FC931610 vs. ExPASy Swiss-Prot
Match: CCT11_ORYSJ (Cyclin-T1-1 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.236e-21
Identity = 48/100 (48.00%), Postives = 70/100 (70.00%), Query Frame = 3
Query:  408 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRXXXXXXXXXXXXKSEETPRPLNDVLRASSET 707
            +++RDE+ER SPSR+DG+ A +E  LR +YC+FI+++GLRL+LPQ TI TA +LCHRF++R+SHA ++             K E+TP PL  V+  + ET
Sbjct:   10 YVTRDEVERGSPSRRDGVGAAKEAELRATYCSFIRDVGLRLQLPQVTIATATLLCHRFYLRQSHAKNEWQTVATVCVFLASKIEDTPCPLQRVIIVAYET 109          
BLAST of FC931610 vs. ExPASy Swiss-Prot
Match: CCT12_ORYSJ (Cyclin-T1-2 OS=Oryza sativa subsp. japonica GN=CYCT1_2 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.373e-18
Identity = 43/100 (43.00%), Postives = 67/100 (67.00%), Query Frame = 3
Query:  408 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRXXXXXXXXXXXXKSEETPRPLNDVLRASSET 707
            + +R+E+E+FSPSRKDGI  + E+ +R  YC+FI+++G+RL+LPQ TI TA++ CHRF++ +S A +              K E+TP PL+ V+R +  T
Sbjct:   19 YFTREELEKFSPSRKDGITEIMESEIRQLYCSFIRDVGIRLKLPQMTIATAIMFCHRFYLYQSLAKNGWQTIATVCIFLASKVEDTPCPLDQVIRVAYGT 118          
BLAST of FC931610 vs. ExPASy Swiss-Prot
Match: CCT11_ARATH (Putative cyclin-T1-1 OS=Arabidopsis thaliana GN=CYCT1-1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.910e-15
Identity = 44/97 (45.36%), Postives = 57/97 (58.76%), Query Frame = 3
Query:  408 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRXXXXXXXXXXXXKSEETPRPLNDVLRAS 698
            + +R+ IE+ SPSR DGI+   ET  R+SY +F+Q LG RL  PQ TI TA+VLC RFF R+S   +D             K E +PRP  DV+  S
Sbjct:    8 YNTREAIEKTSPSRLDGINLKEETFQRWSYTSFLQELGQRLNNPQKTIATAIVLCQRFFTRQSLTKNDPKTVAIICMFIAGKVEGSPRPAGDVVFVS 104          
The following BLAST results are available for this feature:
BLAST of FC931610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
CCT15_ARATH8.228e-2548.33Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=... [more]
CCT14_ORYSJ1.833e-2454.55Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCT12_ARATH3.127e-2455.45Cyclin-T1-2 OS=Arabidopsis thaliana GN=CYCT1-2 PE=... [more]
CCT14_ARATH5.333e-2446.67Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=... [more]
CCT13_ORYSJ1.552e-2354.55Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCT13_ARATH1.897e-2150.51Cyclin-T1-3 OS=Arabidopsis thaliana GN=CYCT1-3 PE=... [more]
CCT11_ORYSJ3.236e-2148.00Cyclin-T1-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCT12_ORYSJ4.373e-1843.00Cyclin-T1-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCT11_ARATH5.910e-1545.36Putative cyclin-T1-1 OS=Arabidopsis thaliana GN=CY... [more]
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Properties
Property NameValue
Genbank descriptionC34107A10EF PostHarvP1 Citrus clementina cDNA clone C34107A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931610 ID=FC931610; Name=FC931610; organism=Citrus clementina; type=EST; length=723bp
ACCATGATAGACATTGGTCTTCTTTCAATAGAGACAACTGCAGCAGCAAT
AGCTACAATAACTACAACTACAACCGAAGCTGGAATGACAATCACGTTCG
AAATTATAACAATTTCCACAGCTATTCAGGGAAATTCAGGGAGCACTATC
AGTATGATAATCCTAGTTACATCACAGCTAGTTATGTTCAACCTAACAAT
GCGCCGTCTTTCAAAAGGAGGAAATTTTCAGCCTCTGCATGGGGAGACAG
TGCAAGGAACTATTTGCAAGTGCCTAATGAATATGAGACTGCCGTTTCAT
CATCCAACAAGACTTTGGTTCCACCTGTTTCCATTTCCAATATTGAGGTG
TCTACATCTATGAGCTGTAAACGTGACCGGTCAAAATTGGAGGATGATGA
GCCAGTGTTTATGTCGAGGGATGAGATTGAGAGATTCTCCCCTTCGAGAA
AAGATGGCATTGATGCACTACGTGAAACACATTTGCGATATTCATATTGT
GCATTCATTCAAAATCTTGGATTGCGGCTTGAGTTGCCACAAACCACTAT
TGGCACTGCCATGGTTCTGTGCCATCGTTTTTTTGTTCGGCGATCACATG
CTTGCCATGACAGATTTATAATTGCTACTGCTGCTCTCTTTCTCGCTGCG
AAGTCTGAGGAGACACCTCGCCCTCTGAACGATGTACTAAGAGCATCTTC
CGAAACTTATCANTAGCAGAATA
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