FC931612

Overview
NameFC931612
Unique NameFC931612
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length254
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15300 contig Ccv1_Contig15300:1..254. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931612 vs. ExPASy Swiss-Prot
Match: HSP71_ARATH (Heat shock cognate 70 kDa protein 1 OS=Arabidopsis thaliana GN=HSC70-1 PE=1 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 5.612e-35
Identity = 73/84 (86.90%), Postives = 76/84 (90.48%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAENYKAEDEEHKKKVEAKNALENYAYXMRKHCQDEKIGSKLDPADKKKIEDAIDQA 253
            TTGQKNKITITNDKGRLSKDEIEKMVQEAE YK+EDEEHKKKVEAKNALENYAY MR   QDEKIG KL  ADKKKIED+I+QA
Sbjct:  500 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIQDEKIGEKLPAADKKKIEDSIEQA 583          
BLAST of FC931612 vs. ExPASy Swiss-Prot
Match: HSP71_SOLLC (Heat shock cognate 70 kDa protein 1 OS=Solanum lycopersicum GN=HSC-I PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.358e-33
Identity = 71/84 (84.52%), Postives = 75/84 (89.29%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAENYKAEDEEHKKKVEAKNALENYAYXMRKHCQDEKIGSKLDPADKKKIEDAIDQA 253
            TTGQKNKITITNDKGRLSK+EIEKMVQEAE YKAEDEE KKKVEAKN+LENYAY MR   +DEKIGSKL   DKKKIEDA+DQA
Sbjct:  502 TTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEELKKKVEAKNSLENYAYNMRNTVKDEKIGSKLSSDDKKKIEDAVDQA 585          
BLAST of FC931612 vs. ExPASy Swiss-Prot
Match: HSP72_ARATH (Heat shock cognate 70 kDa protein 2 OS=Arabidopsis thaliana GN=HSC70-2 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 8.960e-33
Identity = 67/84 (79.76%), Postives = 76/84 (90.48%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAENYKAEDEEHKKKVEAKNALENYAYXMRKHCQDEKIGSKLDPADKKKIEDAIDQA 253
            TTG+KNKITITNDKGRLSK++IEKMVQEAE YK+EDEEHKKKVEAKNALENYAY MR   +DEKIG KL  ADKKK+ED+I++A
Sbjct:  500 TTGKKNKITITNDKGRLSKEDIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIRDEKIGEKLPAADKKKVEDSIEEA 583          
BLAST of FC931612 vs. ExPASy Swiss-Prot
Match: HSP73_ARATH (Heat shock cognate 70 kDa protein 3 OS=Arabidopsis thaliana GN=HSC70-3 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.528e-32
Identity = 69/84 (82.14%), Postives = 74/84 (88.10%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAENYKAEDEEHKKKVEAKNALENYAYXMRKHCQDEKIGSKLDPADKKKIEDAIDQA 253
            TTGQKNKITITNDKGRLSKDEIEKMVQEAE YK+EDEEHKKKV+AKNALENYAY MR   +DEKIG KL   DKKKIED+I+ A
Sbjct:  500 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHKKKVDAKNALENYAYNMRNTIRDEKIGEKLAGDDKKKIEDSIEAA 583          
BLAST of FC931612 vs. ExPASy Swiss-Prot
Match: HSP72_SOLLC (Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.528e-32
Identity = 69/84 (82.14%), Postives = 74/84 (88.10%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAENYKAEDEEHKKKVEAKNALENYAYXMRKHCQDEKIGSKLDPADKKKIEDAIDQA 253
            TTGQKNKITITNDKGRLSK+EIEKMVQEAE YK+EDEEHKKKVEAKNALENYAY MR   +DEKI SKL   D+ KIEDAI+QA
Sbjct:  500 TTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDEKIASKLSADDRTKIEDAIEQA 583          
BLAST of FC931612 vs. ExPASy Swiss-Prot
Match: HSP7E_SPIOL (Chloroplast envelope membrane 70 kDa heat shock-related protein OS=Spinacia oleracea GN=SCE70 PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 1.996e-32
Identity = 68/82 (82.93%), Postives = 74/82 (90.24%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAENYKAEDEEHKKKVEAKNALENYAYXMRKHCQDEKIGSKLDPADKKKIEDAID 247
            TTGQKNKI ITNDKGRLSK+EIEKMVQEAE YK+EDEEHKKKVE+KNALENYAY MR   +DEKIG+KL  ADKKKIE+AID
Sbjct:  500 TTGQKNKIRITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVESKNALENYAYNMRNIVKDEKIGAKLSEADKKKIEEAID 581          
BLAST of FC931612 vs. ExPASy Swiss-Prot
Match: HSP7C_PETHY (Heat shock cognate 70 kDa protein OS=Petunia hybrida GN=HSP70 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.294e-31
Identity = 67/84 (79.76%), Postives = 75/84 (89.29%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAENYKAEDEEHKKKVEAKNALENYAYXMRKHCQDEKIGSKLDPADKKKIEDAIDQA 253
            TTGQKNKITITNDKGRLSK+EIE+MVQEAE YK+EDEE KKKVEAKNALENYAY MR   +D+KI S+L  ADKK+IEDAID+A
Sbjct:  500 TTGQKNKITITNDKGRLSKEEIERMVQEAEKYKSEDEELKKKVEAKNALENYAYNMRNTIKDDKINSQLSAADKKRIEDAIDEA 583          
BLAST of FC931612 vs. ExPASy Swiss-Prot
Match: HSP70_MAIZE (Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 1.690e-31
Identity = 68/84 (80.95%), Postives = 73/84 (86.90%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAENYKAEDEEHKKKVEAKNALENYAYXMRKHCQDEKIGSKLDPADKKKIEDAIDQA 253
            TTGQKNKITITNDKGRLSK+EIEKMVQEAE YKAEDEE KKKV+AKNALENYAY MR   +D+KI SKL   DKKKIEDA+D A
Sbjct:  496 TTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEVKKKVDAKNALENYAYNMRNTIKDDKIASKLPAEDKKKIEDAVDGA 579          
BLAST of FC931612 vs. ExPASy Swiss-Prot
Match: HSP70_LUPPO (Heat shock 70 kDa protein (Fragment) OS=Lupinus polyphyllus PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 2.698e-29
Identity = 64/84 (76.19%), Postives = 69/84 (82.14%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAENYKAEDEEHKKKVEAKNALENYAYXMRKHCQDEKIGSKLDPADKKKIEDAIDQA 253
            TTGQKNKITITNDKGRLSK++IEKMVQE E YKAEDEE KKKV+ KNALENYAY MR    D+KI SKL   DKKKIED +D A
Sbjct:  108 TTGQKNKITITNDKGRLSKEDIEKMVQEVEKYKAEDEEVKKKVDTKNALENYAYSMRNTITDDKITSKLPTEDKKKIEDTVDGA 191          
BLAST of FC931612 vs. ExPASy Swiss-Prot
Match: HSP70_SOYBN (Heat shock 70 kDa protein OS=Glycine max GN=HSP70 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.849e-29
Identity = 62/84 (73.81%), Postives = 71/84 (84.52%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAENYKAEDEEHKKKVEAKNALENYAYXMRKHCQDEKIGSKLDPADKKKIEDAIDQA 253
            T G KNKITITNDKGRLSK+EIEKMV++AE YKAEDEE KKKVEAKN+LENYAY MR   +DEKIG KL P +K+KIE A++ A
Sbjct:  499 TAGVKNKITITNDKGRLSKEEIEKMVKDAERYKAEDEEVKKKVEAKNSLENYAYNMRNTIKDEKIGGKLSPDEKQKIEKAVEDA 582          
The following BLAST results are available for this feature:
BLAST of FC931612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
HSP71_ARATH5.612e-3586.90Heat shock cognate 70 kDa protein 1 OS=Arabidopsis... [more]
HSP71_SOLLC2.358e-3384.52Heat shock cognate 70 kDa protein 1 OS=Solanum lyc... [more]
HSP72_ARATH8.960e-3379.76Heat shock cognate 70 kDa protein 2 OS=Arabidopsis... [more]
HSP73_ARATH1.528e-3282.14Heat shock cognate 70 kDa protein 3 OS=Arabidopsis... [more]
HSP72_SOLLC1.528e-3282.14Heat shock cognate 70 kDa protein 2 OS=Solanum lyc... [more]
HSP7E_SPIOL1.996e-3282.93Chloroplast envelope membrane 70 kDa heat shock-re... [more]
HSP7C_PETHY1.294e-3179.76Heat shock cognate 70 kDa protein OS=Petunia hybri... [more]
HSP70_MAIZE1.690e-3180.95Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=... [more]
HSP70_LUPPO2.698e-2976.19Heat shock 70 kDa protein (Fragment) OS=Lupinus po... [more]
HSP70_SOYBN7.849e-2973.81Heat shock 70 kDa protein OS=Glycine max GN=HSP70 ... [more]

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Properties
Property NameValue
Genbank descriptionC34107A12EF PostHarvP1 Citrus clementina cDNA clone C34107A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931612 ID=FC931612; Name=FC931612; organism=Citrus clementina; type=EST; length=254bp
GACAACGGGCCAAAAGAACAAGATCACAATCACCAACGATAAGGGTAGAT
TGTCAAAGGATGAAATTGAGAAGATGGTTCAAGAGGCCGAGAACTACAAG
GCTGAAGACGAGGAGCACAAGAAGAAGGTCGAGGCCAAGAATGCCTTGGA
AAACTATGCCTACNATATGAGGAAACACTGTCAGGACGAGAAGATCGGCT
CCAAACTTGATCCAGCTGACAAGAAGAAGATTGAGGATGCCATTGATCAG
GCAA
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