FC931613

Overview
NameFC931613
Unique NameFC931613
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length573
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig789 contig Ccv1_Contig789:455..1027. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 349.747 bits (896), Expect = 1.730e-96
Identity = 167/179 (93.30%), Postives = 173/179 (96.65%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            TTKYYC   DAP H+DF+KNMITGTSQA+CAVLIIDSTTG FEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNP+K+PFVPISGFEGDNMIERSTNLDWYKGPTLL+ALD INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL
Sbjct:   82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 260          

HSP 2 Score: 24.2534 bits (51), Expect = 1.730e-96
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:  538 QPGMVVTFGP 567
            +PGMVVTFGP
Sbjct:  261 KPGMVVTFGP 270          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 348.977 bits (894), Expect = 2.945e-96
Identity = 166/179 (92.74%), Postives = 173/179 (96.65%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            TTKYYC   DAP H+DF+KNMITGTSQA+CAVLIIDSTTG FEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNP+K+PFVPISGFEGDNMIERSTNLDWYKGPTLL+ALD INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGV+
Sbjct:   82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVI 260          

HSP 2 Score: 24.2534 bits (51), Expect = 2.945e-96
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:  538 QPGMVVTFGP 567
            +PGMVVTFGP
Sbjct:  261 KPGMVVTFGP 270          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 347.821 bits (891), Expect = 6.538e-96
Identity = 166/179 (92.74%), Postives = 173/179 (96.65%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            TTKYYC   DAP H+DF+KNMITGTSQA+CAVLIIDSTTG FEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARY+EIVKEVSSYLKKVGYNP+KVPFVPISGFEGDNMIERSTNLDWYKGPTLL+ALD INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGV+
Sbjct:   82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYEEIVKEVSSYLKKVGYNPDKVPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVI 260          

HSP 2 Score: 24.2534 bits (51), Expect = 6.538e-96
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:  538 QPGMVVTFGP 567
            +PGMVVTFGP
Sbjct:  261 KPGMVVTFGP 270          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 1.113e-95
Identity = 165/179 (92.18%), Postives = 172/179 (96.09%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            TTKYYC   DAP H+DF+KNMITGTSQA+CAVLIIDSTTG FEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNP+K+PFVPISGFEGDNMIERSTNLDWYKGPTLL+ALD I EPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETG+L
Sbjct:   82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGIL 260          

HSP 2 Score: 24.2534 bits (51), Expect = 1.113e-95
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:  538 QPGMVVTFGP 567
            +PGMVVTFGP
Sbjct:  261 KPGMVVTFGP 270          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 348.206 bits (892), Expect = 1.673e-95
Identity = 166/179 (92.74%), Postives = 173/179 (96.65%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            TTKYYC   DAP H+DF+KNMITGTSQA+CAVLIIDSTTG FEAGISKDGQTREHALL+FTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNP+K+PFVPISGFEGDNMIERSTNLDWYKGPTLLDALD I+EPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL
Sbjct:   82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLSFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDQISEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 260          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 2.855e-95
Identity = 164/179 (91.62%), Postives = 173/179 (96.65%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            TTKYYC   DAP H+DF+KNMITGTSQA+CAVLIIDSTTG FEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEI+KEVSSYLKKVGYNP+K+PFVPISGFEGDNMIERSTNLDWYKGPTLL+ALD INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETG++
Sbjct:   82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMI 260          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 3.223e-95
Identity = 165/179 (92.18%), Postives = 172/179 (96.09%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            TTKYYC   DAP H+DF+KNMITGTSQA+CAVLIIDSTTG FEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNP+K+PFVPISGFEGDNMIERSTNLDWYKGPTLL+ALD IN+ KRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL
Sbjct:   82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINDAKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 260          

HSP 2 Score: 24.2534 bits (51), Expect = 3.223e-95
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:  538 QPGMVVTFGP 567
            +PGMVVTFGP
Sbjct:  261 KPGMVVTFGP 270          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 7.156e-95
Identity = 165/179 (92.18%), Postives = 172/179 (96.09%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            TTKYYC   DAP H+DF+KNMITGTSQA+CAVLIIDSTTG FEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNP+K+ FVPISGFEGDNMIERSTNLDWYKGPTLL+ALD INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGV+
Sbjct:   82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIHFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVI 260          

HSP 2 Score: 24.2534 bits (51), Expect = 7.156e-95
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:  538 QPGMVVTFGP 567
            +PGMVVTFGP
Sbjct:  261 KPGMVVTFGP 270          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 1.085e-94
Identity = 164/179 (91.62%), Postives = 172/179 (96.09%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T+KYYC   DAP H+DF+KNMITGTSQA+CAVLIIDSTTG FEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK RY+EIVKEVSSYLKKVGYNP+K+PFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIG VPVGRVETGV+
Sbjct:   82 TSKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKGRYEEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGIVPVGRVETGVV 260          
BLAST of FC931613 vs. ExPASy Swiss-Prot
Match: EF1A1_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 1.589e-94
Identity = 164/179 (91.62%), Postives = 169/179 (94.41%), Query Frame = 2
Query:    2 TTKYYCAGFDAPEHQDFVKNMITGTSQAECAVLIIDSTTGSFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 538
            T KYYC   DAP H+DF+KNMITGTSQA+CAVLIID TTG FEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEK+ FVPISGFEGDNMIERSTNLDWYKGPTLLDALD INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETG +
Sbjct:   82 TNKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDPTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKIAFVPISGFEGDNMIERSTNLDWYKGPTLLDALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGTI 260          

HSP 2 Score: 24.2534 bits (51), Expect = 1.589e-94
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:  538 QPGMVVTFGP 567
            +PGMVVTFGP
Sbjct:  261 KPGMVVTFGP 270          
The following BLAST results are available for this feature:
BLAST of FC931613 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_ORYSJ1.730e-9693.30Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_SOLLC2.945e-9692.74Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A_WHEAT6.538e-9692.74Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]
EF1A_MANES1.113e-9592.18Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A_SOYBN1.673e-9592.74Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_ARATH2.855e-9591.62Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A_TOBAC3.223e-9592.18Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_MAIZE7.156e-9592.18Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_VICFA1.085e-9491.62Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A1_DAUCA1.589e-9491.62Elongation factor 1-alpha OS=Daucus carota PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionC34107B01EF PostHarvP1 Citrus clementina cDNA clone C34107B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931613 ID=FC931613; Name=FC931613; organism=Citrus clementina; type=EST; length=573bp
GACCACCAAGTACTACTGCGCCGGCTTTGATGCTCCCGAACATCAGGACT
TTGTCAAGAACATGATTACCGGTACCTCACAGGCTGAGTGTGCCGTCCTC
ATCATTGACTCCACCACCGGCAGTTTTGAAGCTGGTATCTCCAAGGATGG
TCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGA
TGATTTGCTGCTGTAACAAGATGGACGCCACCACCCCCAAGTATTCAAAG
GCTAGGTACGATGAAATTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGT
TGGATACAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGG
GTGACAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGTCCA
ACCCTGCTGGACGCTCTTGACAATATCAATGAGCCGAAGAGGCCCTCAGA
CAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGGCATTG
GAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAGCCTGGTATGG
TGGTGACGTTTGGCCCTCTGGAT
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