FC931619

Overview
NameFC931619
Unique NameFC931619
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3400 contig Ccv1_Contig3400:363..1083. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931619 vs. ExPASy Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.151e-21
Identity = 65/95 (68.42%), Postives = 70/95 (73.68%), Query Frame = 3 
Query:  462 LRRRWRDVLPLRIRDFATRSRSGRNRILDWAEIL----NNSIEFRLEAPESDRYIGNPADYMD-AAGYEALLQNLAESD----GGRRGAPRAAKS 719
            LRRR R   PL      T+SR+GRNRILDWAEIL    +NSIEFR+E   SDRY GNPADY+D AAGYEALLQNLAE D    GGRRGAP AAKS
Sbjct:  151 LRRRNR--FPLT----TTQSRTGRNRILDWAEILMGIEDNSIEFRME---SDRYAGNPADYIDDAAGYEALLQNLAEGDGGGGGGRRGAPPAAKS 236
The following BLAST results are available for this feature:
BLAST of FC931619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CIP8_ARATH7.151e-2168.42E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionC34107B08EF PostHarvP1 Citrus clementina cDNA clone C34107B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931619 ID=FC931619; Name=FC931619; organism=Citrus clementina; type=EST; length=721bp
ACTGTGAGAAACGTGTGTCAATCGAAACCCTTGCCAATCTCCCCGATGTT
ATTTGTCATGAATGTAAGAACGGCTTTGTCGAATCAATCCCCGTAACGTT
AACCCCACCCTTTTCCCCACCTTCACTGACCCCTGATCACGTCGATGACC
CCTCCTTCGGATCCCAGTTCCTTCAGGTCCTGCGTTTAATAGCGCAAGCC
GCGCGTGATGAGGACGCGCCCCAGCAGCTTACCCAGGATCCTCAGTATGG
ACATGATTTTCTTCGAATTGAGCTCGATGGATGGGAGAACGATGCGCGTG
AGGATGAAAATGATGAAAACGAAGAGAACCGAAACGTTGACGAAGAAGGG
GACGAAAATGAAAACGAAAACGAAAACGAAGACGACGAAGAGAATGAAGG
AGGAGAAGATCGATCTGATAACGAGAACGAAGAGAATATAGAAAATGAAG
ACGAAGAAGATCTGAGACGGAGGTGGCGGGATGTGCTCCCCCTACGGATC
CGAGACTTCGCGACCCGATCGAGATCCGGTCGTAATCGGATCCTGGACTG
GGCCGAGATTCTGAACAACTCGATAGAATTTCGACTTGAAGCTCCGGAAT
CCGACCGGTACATAGGCAATCCTGCGGATTACATGGACGCAGCTGGATAC
GAGGCGTTGTTGCAGAACTTAGCTGAAAGTGACGGTGGTAGGAGAGGGGC
CCCGCGCGCGGCGAAATCTGC
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