FC931622
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931622 vs. ExPASy Swiss-Prot
Match: NMD3_DICDI (60S ribosomal export protein NMD3 OS=Dictyostelium discoideum GN=nmd3 PE=3 SV=1) HSP 1 Score: 238.424 bits (607), Expect = 2.651e-62 Identity = 109/227 (48.02%), Postives = 156/227 (68.72%), Query Frame = 1 Query: 1 IWTEPHSQRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWXXXXXXXXXXXXXVEYIVLDVEVVSS 681 +WTEPHS+R+KVKL +QKEV AIL+Q +++E++ Q CD C + +A D W + VQLRQ V H+RTF Y+EQLILKH+A ++ + I + G+DFFF NR+HA+KFVEF+ + PV+++ +QL+S D ++N NYKYTFSVEI P+ ++D++CLPPK+A LGN+GPLV+ KV+N I +DP TL + A +W VE+ VLDV + + Sbjct: 97 VWTEPHSKRLKVKLTIQKEVFTSAILQQIFIIEFIVQGQQCDKCQKFEAK-DTWNSVVQLRQKVDHKRTFLYIEQLILKHNAHSQTLNIKEKPDGLDFFFSNRNHAMKFVEFISAITPVKTKKSEQLISSDEQNNAANYKYTFSVEIVPLSKDDIVCLPPKIAHQLGNMGPLVVVTKVSNLIHFIDPNTLHTGEISALTFWNSPFRALSSYKQLVEFTVLDVNLTGA 322
BLAST of FC931622 vs. ExPASy Swiss-Prot
Match: NMD3_DANRE (60S ribosomal export protein NMD3 OS=Danio rerio GN=nmd3 PE=2 SV=1) HSP 1 Score: 236.884 bits (603), Expect = 7.714e-62 Identity = 105/228 (46.05%), Postives = 159/228 (69.74%), Query Frame = 1 Query: 1 IWTEPHSQRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWXXXXXXXXXXXXXVEYIVLDVEVVSSE 684 +WTEPHS+RIK+KL +QKEV+NGAIL+Q + VE+V Q MC+ C RV+A D W A VQ+RQ H++TF+YLEQLILKH +RI ++ +GIDF++ + HA K V+F+ P RS+ ++L+SHD SN +NYK TFSVEI P+C+++++CL P++A SLGN+G + +C++VT+SI L+DP TL+ +D +W E+I++D++++ + Sbjct: 101 LWTEPHSKRIKIKLTIQKEVMNGAILQQVFTVEFVVQGQMCEDCHRVEAK-DFWKAVVQVRQKTVHKKTFYYLEQLILKHKLHQNTVRIKEIHEGIDFYYATKQHAQKMVDFLQCTVPCRSKASQRLISHDVHSNTYNYKSTFSVEIVPVCKDNVVCLSPRLAQSLGNMGQVCVCVRVTSSIHLIDPNTLQIAEVDGSTFWRHPFNSLCSPRQLEEFIIMDIDIIRDQ 327
BLAST of FC931622 vs. ExPASy Swiss-Prot
Match: NMD3_XENTR (60S ribosomal export protein NMD3 OS=Xenopus tropicalis GN=nmd3 PE=2 SV=1) HSP 1 Score: 235.343 bits (599), Expect = 2.244e-61 Identity = 108/225 (48.00%), Postives = 157/225 (69.78%), Query Frame = 1 Query: 1 IWTEPHSQRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWXXXXXXXXXXXXXVEYIVLDVEVV 675 IWTEPHS+R+KVKL +QKEV+NGAIL+Q +VV+Y+ Q MCD C RV+A D W A VQ+RQ V H++TF+YLEQ ILKH +R+ ++ G+DF++ ++ HA K VEF+ P R + ++L+SHD +N +NYK TFSVEI P+C+++L+CL PK+A SLGN+ + IC++VT++I L+DP TL+ +D + YW E+IV+D ++V Sbjct: 101 IWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYIVQSQMCDDCHRVEAK-DFWKAVVQVRQKVLHKKTFYYLEQTILKHRLHQNTLRVKEIHDGLDFYYASKQHAQKMVEFLQCTVPCRFKASQRLISHDIHTNAYNYKSTFSVEIVPVCKDNLVCLSPKLAQSLGNMNQICICVRVTSTIHLIDPSTLQIAEVDGNTYWRSPFNSLFHPKQLEEFIVMDTDIV 324
BLAST of FC931622 vs. ExPASy Swiss-Prot
Match: NMD3_XENLA (60S ribosomal export protein NMD3 OS=Xenopus laevis GN=nmd3 PE=2 SV=1) HSP 1 Score: 233.417 bits (594), Expect = 8.529e-61 Identity = 108/225 (48.00%), Postives = 155/225 (68.89%), Query Frame = 1 Query: 1 IWTEPHSQRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWXXXXXXXXXXXXXVEYIVLDVEVV 675 IWTEPHS+R+KVKL +QKEV+NGAIL+Q +VV+YV Q MCD C RV+A D W A VQ+RQ V H++TF+YLEQ ILKH +R+ ++ G+DF++ ++ H K VEF+ P R + ++L+SHD +N +NYK TFSVEI P+C+++L+CL PK+A SLGN+ + IC +VT++I L+DP TL+ +D + YW E+IV+D E++ Sbjct: 101 IWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYVVQAQMCDDCHRVEAK-DFWKAVVQVRQKVLHKKTFYYLEQTILKHRLHQNTLRVKEIHDGLDFYYASKQHGQKMVEFLQCTVPCRFKASQRLISHDIHTNAYNYKSTFSVEIVPVCKDNLVCLSPKLAQSLGNMNQICICARVTSTIHLIDPSTLQIAEVDGNTYWRYPFNSLFHPKQMEEFIVMDTEII 324
BLAST of FC931622 vs. ExPASy Swiss-Prot
Match: NMD3_MOUSE (60S ribosomal export protein NMD3 OS=Mus musculus GN=Nmd3 PE=2 SV=1) HSP 1 Score: 225.328 bits (573), Expect = 2.323e-58 Identity = 104/225 (46.22%), Postives = 154/225 (68.44%), Query Frame = 1 Query: 1 IWTEPHSQRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWXXXXXXXXXXXXXVEYIVLDVEVV 675 +WTEPHS+R+KVKL +QKEV+NGAIL+Q +VV+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+ +RI ++ G+DF++ ++ HA K VEF+ + P R + ++L+S D SN +NYK TFSVEI PIC+++++CL PK+A SLGN+ + IC++VT++I L+DP TL+ +D + +W E+IV++ V Sbjct: 101 VWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQGIVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICKDNVVCLSPKLAQSLGNMSQICICIRVTSAIHLIDPNTLQVADIDGNTFWSHPFNSLCHPKQLEEFIVIECSTV 324
BLAST of FC931622 vs. ExPASy Swiss-Prot
Match: NMD3_HUMAN (60S ribosomal export protein NMD3 OS=Homo sapiens GN=NMD3 PE=1 SV=1) HSP 1 Score: 224.172 bits (570), Expect = 5.174e-58 Identity = 103/225 (45.78%), Postives = 153/225 (68.00%), Query Frame = 1 Query: 1 IWTEPHSQRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWXXXXXXXXXXXXXVEYIVLDVEVV 675 +WTEPHS+R+KVKL +QKEV+NGAIL+Q +VV+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+ +RI ++ G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI PIC+++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D +W E+IV++ +V Sbjct: 101 VWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICKDNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPKQLEEFIVMECSIV 324
BLAST of FC931622 vs. ExPASy Swiss-Prot
Match: NMD3_BOVIN (60S ribosomal export protein NMD3 OS=Bos taurus GN=NMD3 PE=2 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 6.758e-58 Identity = 104/225 (46.22%), Postives = 153/225 (68.00%), Query Frame = 1 Query: 1 IWTEPHSQRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWXXXXXXXXXXXXXVEYIVLDVEVV 675 +WTEPHS+R+KVKL +QKEV+NGAIL+Q +VV+YV Q MC C RV+A D W A VQ+RQ H++TF+YLEQLILK+ +RI ++ G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI PIC+++++CL PK+A SLGN+ + +C++VT+ I L+DP TL+ +D + +W E+IV++ +V Sbjct: 101 VWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYVVQPQMCGDCHRVEAK-DFWKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPTRYKASQRLISQDIHSNTYNYKSTFSVEIVPICKDNVVCLSPKLAQSLGNMNQICVCIRVTSVIHLIDPNTLQVADIDGNTFWSHPFNSLCHPKQLEEFIVMECSIV 324
BLAST of FC931622 vs. ExPASy Swiss-Prot
Match: NMD3_PONAB (60S ribosomal export protein NMD3 OS=Pongo abelii GN=NMD3 PE=2 SV=1) HSP 1 Score: 222.631 bits (566), Expect = 1.505e-57 Identity = 103/225 (45.78%), Postives = 153/225 (68.00%), Query Frame = 1 Query: 1 IWTEPHSQRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWXXXXXXXXXXXXXVEYIVLDVEVV 675 +WTEPHS+R+KVKL VQKEV+NGAIL+Q +VV+YV Q MC C RV+A D W A +Q+RQ H++TF++LEQLILK+ +RI ++ G+DF++ ++ HA K VEF+ P R + ++L+S D SN +NYK TFSVEI PIC+++++CL PK+A SLGN+ + +C++VT++I L+DP TL+ +D +W E+IV++ +V Sbjct: 101 VWTEPHSKRLKVKLTVQKEVMNGAILQQVFVVDYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYHLEQLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICKDNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPKQLEEFIVMECSIV 324
BLAST of FC931622 vs. ExPASy Swiss-Prot
Match: NMD3_SCHPO (60S ribosomal export protein nmd3 OS=Schizosaccharomyces pombe GN=nmd3 PE=2 SV=1) HSP 1 Score: 221.476 bits (563), Expect = 3.354e-57 Identity = 107/225 (47.56%), Postives = 143/225 (63.56%), Query Frame = 1 Query: 1 IWTEPHSQRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWXXXXXXXXXXXXXVEYIVLDVEVV 675 IWTEPHS+RIKVKL VQKE IL+QS+ VE+ + C C+R P W A Q+RQ V H+RTF YLEQ+ILKH A + I + GIDF+FG R+HA+K VEF+ V P+R + ++L+S D KSN NYK+T+S+EI PIC++DL+CLP VA + GN+ LV+C KV +I LDP TL+ C + YW E+IV DV+++ Sbjct: 107 IWTEPHSRRIKVKLTVQKEAFTNTILQQSFQVEFYVNNTQCPDCARTYT-PHIWKAVCQVRQKVLHKRTFLYLEQIILKHKAHMNTVNIKETKDGIDFYFGQRAHAIKMVEFLSAVVPIRYKGSEELISEDFKSNTANYKFTYSIEIVPICKDDLVCLPKTVAKAHGNIAQLVVCTKVGPTIRFLDPLTLQTCDMLPSIYWRTPFPALADIPELTEFIVADVDLL 330
BLAST of FC931622 vs. ExPASy Swiss-Prot
Match: NMD3_YEAST (60S ribosomal export protein NMD3 OS=Saccharomyces cerevisiae GN=NMD3 PE=1 SV=2) HSP 1 Score: 204.912 bits (520), Expect = 3.248e-52 Identity = 94/223 (42.15%), Postives = 143/223 (64.13%), Query Frame = 1 Query: 1 IWTEPHSQRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWXXXXXXXXXXXXXVEYIVLDVE 669 IWTEPHS+RI++KL VQ E + I++Q++ VEY+ C C+R + W A VQ+RQ V H+RTF +LEQLILKH+A I I++ G+DFF+ ++HAVK ++F+ V P++ + ++L+S D + YK+++SVEI PIC++DL+ LP K+A S+GN+ V+C K++N++ +DP TL+ L YW VE+IVLDV+ Sbjct: 103 IWTEPHSRRIRIKLTVQGEAMTNTIIQQTFEVEYIVIAMQCPDCARSYTT-NTWRATVQIRQKVPHKRTFLFLEQLILKHNAHVDTISISEAKDGLDFFYAQKNHAVKMIDFLNAVVPIKHKKSEELISQDTHTGASTYKFSYSVEIVPICKDDLVVLPKKLAKSMGNISQFVLCSKISNTVQFMDPTTLQTADLSPSVYWRAPFNALADVTQLVEFIVLDVD 324 The following BLAST results are available for this feature:
BLAST of FC931622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931622 ID=FC931622; Name=FC931622; organism=Citrus clementina; type=EST; length=686bpback to top |