FC931622

Overview
NameFC931622
Unique NameFC931622
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12308 contig Ccv1_Contig12308:451..1136. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931622 vs. ExPASy Swiss-Prot
Match: NMD3_DICDI (60S ribosomal export protein NMD3 OS=Dictyostelium discoideum GN=nmd3 PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.651e-62
Identity = 109/227 (48.02%), Postives = 156/227 (68.72%), Query Frame = 1
Query:    1 IWTEPHSQRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWXXXXXXXXXXXXXVEYIVLDVEVVSS 681
            +WTEPHS+R+KVKL +QKEV   AIL+Q +++E++ Q   CD C + +A  D W + VQLRQ V H+RTF Y+EQLILKH+A ++ + I +   G+DFFF NR+HA+KFVEF+  + PV+++  +QL+S D ++N  NYKYTFSVEI P+ ++D++CLPPK+A  LGN+GPLV+  KV+N I  +DP TL    + A  +W             VE+ VLDV +  +
Sbjct:   97 VWTEPHSKRLKVKLTIQKEVFTSAILQQIFIIEFIVQGQQCDKCQKFEAK-DTWNSVVQLRQKVDHKRTFLYIEQLILKHNAHSQTLNIKEKPDGLDFFFSNRNHAMKFVEFISAITPVKTKKSEQLISSDEQNNAANYKYTFSVEIVPLSKDDIVCLPPKIAHQLGNMGPLVVVTKVSNLIHFIDPNTLHTGEISALTFWNSPFRALSSYKQLVEFTVLDVNLTGA 322          
BLAST of FC931622 vs. ExPASy Swiss-Prot
Match: NMD3_DANRE (60S ribosomal export protein NMD3 OS=Danio rerio GN=nmd3 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.714e-62
Identity = 105/228 (46.05%), Postives = 159/228 (69.74%), Query Frame = 1
Query:    1 IWTEPHSQRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWXXXXXXXXXXXXXVEYIVLDVEVVSSE 684
            +WTEPHS+RIK+KL +QKEV+NGAIL+Q + VE+V Q  MC+ C RV+A  D W A VQ+RQ   H++TF+YLEQLILKH      +RI ++ +GIDF++  + HA K V+F+    P RS+  ++L+SHD  SN +NYK TFSVEI P+C+++++CL P++A SLGN+G + +C++VT+SI L+DP TL+   +D   +W              E+I++D++++  +
Sbjct:  101 LWTEPHSKRIKIKLTIQKEVMNGAILQQVFTVEFVVQGQMCEDCHRVEAK-DFWKAVVQVRQKTVHKKTFYYLEQLILKHKLHQNTVRIKEIHEGIDFYYATKQHAQKMVDFLQCTVPCRSKASQRLISHDVHSNTYNYKSTFSVEIVPVCKDNVVCLSPRLAQSLGNMGQVCVCVRVTSSIHLIDPNTLQIAEVDGSTFWRHPFNSLCSPRQLEEFIIMDIDIIRDQ 327          
BLAST of FC931622 vs. ExPASy Swiss-Prot
Match: NMD3_XENTR (60S ribosomal export protein NMD3 OS=Xenopus tropicalis GN=nmd3 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.244e-61
Identity = 108/225 (48.00%), Postives = 157/225 (69.78%), Query Frame = 1
Query:    1 IWTEPHSQRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWXXXXXXXXXXXXXVEYIVLDVEVV 675
            IWTEPHS+R+KVKL +QKEV+NGAIL+Q +VV+Y+ Q  MCD C RV+A  D W A VQ+RQ V H++TF+YLEQ ILKH      +R+ ++  G+DF++ ++ HA K VEF+    P R +  ++L+SHD  +N +NYK TFSVEI P+C+++L+CL PK+A SLGN+  + IC++VT++I L+DP TL+   +D + YW              E+IV+D ++V
Sbjct:  101 IWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYIVQSQMCDDCHRVEAK-DFWKAVVQVRQKVLHKKTFYYLEQTILKHRLHQNTLRVKEIHDGLDFYYASKQHAQKMVEFLQCTVPCRFKASQRLISHDIHTNAYNYKSTFSVEIVPVCKDNLVCLSPKLAQSLGNMNQICICVRVTSTIHLIDPSTLQIAEVDGNTYWRSPFNSLFHPKQLEEFIVMDTDIV 324          
BLAST of FC931622 vs. ExPASy Swiss-Prot
Match: NMD3_XENLA (60S ribosomal export protein NMD3 OS=Xenopus laevis GN=nmd3 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 8.529e-61
Identity = 108/225 (48.00%), Postives = 155/225 (68.89%), Query Frame = 1
Query:    1 IWTEPHSQRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWXXXXXXXXXXXXXVEYIVLDVEVV 675
            IWTEPHS+R+KVKL +QKEV+NGAIL+Q +VV+YV Q  MCD C RV+A  D W A VQ+RQ V H++TF+YLEQ ILKH      +R+ ++  G+DF++ ++ H  K VEF+    P R +  ++L+SHD  +N +NYK TFSVEI P+C+++L+CL PK+A SLGN+  + IC +VT++I L+DP TL+   +D + YW              E+IV+D E++
Sbjct:  101 IWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYVVQAQMCDDCHRVEAK-DFWKAVVQVRQKVLHKKTFYYLEQTILKHRLHQNTLRVKEIHDGLDFYYASKQHGQKMVEFLQCTVPCRFKASQRLISHDIHTNAYNYKSTFSVEIVPVCKDNLVCLSPKLAQSLGNMNQICICARVTSTIHLIDPSTLQIAEVDGNTYWRYPFNSLFHPKQMEEFIVMDTEII 324          
BLAST of FC931622 vs. ExPASy Swiss-Prot
Match: NMD3_MOUSE (60S ribosomal export protein NMD3 OS=Mus musculus GN=Nmd3 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.323e-58
Identity = 104/225 (46.22%), Postives = 154/225 (68.44%), Query Frame = 1
Query:    1 IWTEPHSQRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWXXXXXXXXXXXXXVEYIVLDVEVV 675
            +WTEPHS+R+KVKL +QKEV+NGAIL+Q +VV+YV Q  MC  C RV+A  D W A +Q+RQ   H++TF+YLEQLILK+      +RI ++  G+DF++ ++ HA K VEF+  + P R +  ++L+S D  SN +NYK TFSVEI PIC+++++CL PK+A SLGN+  + IC++VT++I L+DP TL+   +D + +W              E+IV++   V
Sbjct:  101 VWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQGIVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICKDNVVCLSPKLAQSLGNMSQICICIRVTSAIHLIDPNTLQVADIDGNTFWSHPFNSLCHPKQLEEFIVIECSTV 324          
BLAST of FC931622 vs. ExPASy Swiss-Prot
Match: NMD3_HUMAN (60S ribosomal export protein NMD3 OS=Homo sapiens GN=NMD3 PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.174e-58
Identity = 103/225 (45.78%), Postives = 153/225 (68.00%), Query Frame = 1
Query:    1 IWTEPHSQRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWXXXXXXXXXXXXXVEYIVLDVEVV 675
            +WTEPHS+R+KVKL +QKEV+NGAIL+Q +VV+YV Q  MC  C RV+A  D W A +Q+RQ   H++TF+YLEQLILK+      +RI ++  G+DF++ ++ HA K VEF+    P R +  ++L+S D  SN +NYK TFSVEI PIC+++++CL PK+A SLGN+  + +C++VT++I L+DP TL+   +D   +W              E+IV++  +V
Sbjct:  101 VWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICKDNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPKQLEEFIVMECSIV 324          
BLAST of FC931622 vs. ExPASy Swiss-Prot
Match: NMD3_BOVIN (60S ribosomal export protein NMD3 OS=Bos taurus GN=NMD3 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 6.758e-58
Identity = 104/225 (46.22%), Postives = 153/225 (68.00%), Query Frame = 1
Query:    1 IWTEPHSQRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWXXXXXXXXXXXXXVEYIVLDVEVV 675
            +WTEPHS+R+KVKL +QKEV+NGAIL+Q +VV+YV Q  MC  C RV+A  D W A VQ+RQ   H++TF+YLEQLILK+      +RI ++  G+DF++ ++ HA K VEF+    P R +  ++L+S D  SN +NYK TFSVEI PIC+++++CL PK+A SLGN+  + +C++VT+ I L+DP TL+   +D + +W              E+IV++  +V
Sbjct:  101 VWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYVVQPQMCGDCHRVEAK-DFWKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPTRYKASQRLISQDIHSNTYNYKSTFSVEIVPICKDNVVCLSPKLAQSLGNMNQICVCIRVTSVIHLIDPNTLQVADIDGNTFWSHPFNSLCHPKQLEEFIVMECSIV 324          
BLAST of FC931622 vs. ExPASy Swiss-Prot
Match: NMD3_PONAB (60S ribosomal export protein NMD3 OS=Pongo abelii GN=NMD3 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.505e-57
Identity = 103/225 (45.78%), Postives = 153/225 (68.00%), Query Frame = 1
Query:    1 IWTEPHSQRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWXXXXXXXXXXXXXVEYIVLDVEVV 675
            +WTEPHS+R+KVKL VQKEV+NGAIL+Q +VV+YV Q  MC  C RV+A  D W A +Q+RQ   H++TF++LEQLILK+      +RI ++  G+DF++ ++ HA K VEF+    P R +  ++L+S D  SN +NYK TFSVEI PIC+++++CL PK+A SLGN+  + +C++VT++I L+DP TL+   +D   +W              E+IV++  +V
Sbjct:  101 VWTEPHSKRLKVKLTVQKEVMNGAILQQVFVVDYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYHLEQLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICKDNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPKQLEEFIVMECSIV 324          
BLAST of FC931622 vs. ExPASy Swiss-Prot
Match: NMD3_SCHPO (60S ribosomal export protein nmd3 OS=Schizosaccharomyces pombe GN=nmd3 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.354e-57
Identity = 107/225 (47.56%), Postives = 143/225 (63.56%), Query Frame = 1
Query:    1 IWTEPHSQRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWXXXXXXXXXXXXXVEYIVLDVEVV 675
            IWTEPHS+RIKVKL VQKE     IL+QS+ VE+   +  C  C+R    P  W A  Q+RQ V H+RTF YLEQ+ILKH A    + I +   GIDF+FG R+HA+K VEF+  V P+R +  ++L+S D KSN  NYK+T+S+EI PIC++DL+CLP  VA + GN+  LV+C KV  +I  LDP TL+ C +    YW              E+IV DV+++
Sbjct:  107 IWTEPHSRRIKVKLTVQKEAFTNTILQQSFQVEFYVNNTQCPDCARTYT-PHIWKAVCQVRQKVLHKRTFLYLEQIILKHKAHMNTVNIKETKDGIDFYFGQRAHAIKMVEFLSAVVPIRYKGSEELISEDFKSNTANYKFTYSIEIVPICKDDLVCLPKTVAKAHGNIAQLVVCTKVGPTIRFLDPLTLQTCDMLPSIYWRTPFPALADIPELTEFIVADVDLL 330          
BLAST of FC931622 vs. ExPASy Swiss-Prot
Match: NMD3_YEAST (60S ribosomal export protein NMD3 OS=Saccharomyces cerevisiae GN=NMD3 PE=1 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 3.248e-52
Identity = 94/223 (42.15%), Postives = 143/223 (64.13%), Query Frame = 1
Query:    1 IWTEPHSQRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKSNNFNYKYTFSVEISPICREDLICLPPKVAVSLGNLGPLVICMKVTNSIALLDPFTLRHCFLDADQYWXXXXXXXXXXXXXVEYIVLDVE 669
            IWTEPHS+RI++KL VQ E +   I++Q++ VEY+     C  C+R     + W A VQ+RQ V H+RTF +LEQLILKH+A    I I++   G+DFF+  ++HAVK ++F+  V P++ +  ++L+S D  +    YK+++SVEI PIC++DL+ LP K+A S+GN+   V+C K++N++  +DP TL+   L    YW             VE+IVLDV+
Sbjct:  103 IWTEPHSRRIRIKLTVQGEAMTNTIIQQTFEVEYIVIAMQCPDCARSYTT-NTWRATVQIRQKVPHKRTFLFLEQLILKHNAHVDTISISEAKDGLDFFYAQKNHAVKMIDFLNAVVPIKHKKSEELISQDTHTGASTYKFSYSVEIVPICKDDLVVLPKKLAKSMGNISQFVLCSKISNTVQFMDPTTLQTADLSPSVYWRAPFNALADVTQLVEFIVLDVD 324          
The following BLAST results are available for this feature:
BLAST of FC931622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
NMD3_DICDI2.651e-6248.0260S ribosomal export protein NMD3 OS=Dictyostelium... [more]
NMD3_DANRE7.714e-6246.0560S ribosomal export protein NMD3 OS=Danio rerio G... [more]
NMD3_XENTR2.244e-6148.0060S ribosomal export protein NMD3 OS=Xenopus tropi... [more]
NMD3_XENLA8.529e-6148.0060S ribosomal export protein NMD3 OS=Xenopus laevi... [more]
NMD3_MOUSE2.323e-5846.2260S ribosomal export protein NMD3 OS=Mus musculus ... [more]
NMD3_HUMAN5.174e-5845.7860S ribosomal export protein NMD3 OS=Homo sapiens ... [more]
NMD3_BOVIN6.758e-5846.2260S ribosomal export protein NMD3 OS=Bos taurus GN... [more]
NMD3_PONAB1.505e-5745.7860S ribosomal export protein NMD3 OS=Pongo abelii ... [more]
NMD3_SCHPO3.354e-5747.5660S ribosomal export protein nmd3 OS=Schizosacchar... [more]
NMD3_YEAST3.248e-5242.1560S ribosomal export protein NMD3 OS=Saccharomyces... [more]
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Properties
Property NameValue
Genbank descriptionC34107B11EF PostHarvP1 Citrus clementina cDNA clone C34107B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931622 ID=FC931622; Name=FC931622; organism=Citrus clementina; type=EST; length=686bp
ATTTGGACTGAGCCTCACTCACAGAGGATCAAGGTCAAGCTGAAAGTGCA
GAAGGAGGTTCTTAATGGGGCGATTCTTGAGCAGTCATATGTTGTTGAGT
ATGTCCAGCAAGATCATATGTGTGATTCTTGTTCGAGAGTTCAAGCCAAC
CCTGACCAGTGGGTTGCTGCCGTGCAGCTGCGGCAGCATGTTACTCACAG
GCGAACCTTCTTTTATTTAGAGCAACTGATTCTAAAGCATGATGCTGCTG
CTCGGGCTATTAGAATCACGCAAATGGATCAAGGAATTGATTTCTTCTTT
GGTAATAGAAGCCATGCTGTGAAATTTGTTGAATTTGTGGGTAAGGTTGC
TCCAGTAAGAAGCCGCCATGACAAACAGCTTGTCTCTCATGATCCTAAGA
GCAACAATTTCAATTATAAGTATACATTTTCAGTAGAGATCAGCCCCATT
TGTCGTGAGGATTTAATATGTCTGCCTCCAAAAGTTGCAGTTAGTCTGGG
AAATCTTGGTCCACTTGTTATCTGTATGAAAGTAACAAATAGCATTGCGT
TGCTGGATCCATTTACTTTAAGACACTGTTTCTTGGATGCTGATCAATAT
TGGAGATCATCCTTNCAATCTTTGCTCACTAGCAGACAGCTTGTTGAGTA
TATTGTGTTAGATGTGGAGGTTGTTTCTTCTGAAGT
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