FC931623

Overview
NameFC931623
Unique NameFC931623
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15361 contig Ccv1_Contig15361:1..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGL2_ARATH (Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic OS=Arabidopsis thaliana GN=APL2 PE=2 SV=2)

HSP 1 Score: 389.808 bits (1000), Expect = 7.892e-108
Identity = 187/238 (78.57%), Postives = 211/238 (88.66%), Query Frame = 2
Query:    2 ARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYTSARFCHP 715
            +R+YN GNGVNFGDGFVEVLAATQT G+AGKKWFQGTADAVRQFIWVFEDAK KNVE+VLILSGDHLYRMDY  F+QKHI++ ADITVSC+PMD+ RASD+GL+KID+SG+IIQF+EKPKG DLK MQ DT++LGL   +A + PYIASMGVY+FR +VLL LLRSSYP SNDFGSEIIP +V +HNVQAFLFNDYWEDIGTI SFF ANLALTEQP KF+FYD KTPF+TS RF  P
Sbjct:  150 SRTYNFGNGVNFGDGFVEVLAATQTSGDAGKKWFQGTADAVRQFIWVFEDAKTKNVEHVLILSGDHLYRMDYMNFVQKHIESNADITVSCLPMDESRASDFGLLKIDQSGKIIQFSEKPKGDDLKAMQVDTSILGLPPKEAAESPYIASMGVYVFRKEVLLKLLRSSYPTSNDFGSEIIPLAVGEHNVQAFLFNDYWEDIGTIGSFFDANLALTEQPPKFQFYDQKTPFFTSPRFLPP 387          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGL1_BETVU (Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Beta vulgaris GN=AGPS1 PE=2 SV=1)

HSP 1 Score: 388.267 bits (996), Expect = 2.296e-107
Identity = 184/238 (77.31%), Postives = 208/238 (87.39%), Query Frame = 2
Query:    2 ARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYTSARFCHP 715
            AR+YN G+GVNFGDGFVEV AATQTPGE+GKKWFQGTADAVRQF W FED+K+K+VE+++ILSGDHLYRMDY  F QKHIDT ADITVSC+PMDD RASDYGLMKID +G+I+ FAEKPKG DL  MQ DTT+LGLS  +A+  PYIASMGVY+FRTDVL+ LL   YP SNDFGSEIIP++V + NVQA+LFNDYWEDIGTIKSFF +NLALT+QP KFEFYDPKTPFYTSARF  P
Sbjct:  154 ARTYNFGDGVNFGDGFVEVFAATQTPGESGKKWFQGTADAVRQFFWAFEDSKSKDVEHIVILSGDHLYRMDYMSFWQKHIDTNADITVSCIPMDDSRASDYGLMKIDHTGRIVHFAEKPKGSDLTAMQVDTTVLGLSDLEAMSNPYIASMGVYVFRTDVLMELLNRKYPSSNDFGSEIIPSAVGESNVQAYLFNDYWEDIGTIKSFFDSNLALTQQPPKFEFYDPKTPFYTSARFLPP 391          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGL2_SOLTU (Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS2 PE=2 SV=1)

HSP 1 Score: 382.874 bits (982), Expect = 9.647e-106
Identity = 183/236 (77.54%), Postives = 208/236 (88.14%), Query Frame = 2
Query:    8 SYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYTSARFCHP 715
            +YN GNGV FGDGFVEVLA TQTPG+  K WFQ  ADAVR+FIWVFE+ KNKNVE+++ILSGDHLYRM+Y +F+QKHIDT ADITVSCVPMDD RASD+GLMKID +G IIQFAEKPKGP LK MQ DT++LGLS  +A  FPYIASMGVY+F+TDVLLNLL+S+YP  NDFGSEIIP++VKDHNVQA+LFNDYWEDIGT+KSFF ANLALT+QP KF+F DPKTPFYTSARF  P
Sbjct:  154 TYNFGNGVGFGDGFVEVLAGTQTPGDGRKMWFQA-ADAVREFIWVFENQKNKNVEHIIILSGDHLYRMNYMDFVQKHIDTNADITVSCVPMDDGRASDFGLMKIDETGAIIQFAEKPKGPALKAMQVDTSILGLSEQEASNFPYIASMGVYVFKTDVLLNLLKSAYPSCNDFGSEIIPSAVKDHNVQAYLFNDYWEDIGTVKSFFDANLALTKQPPKFDFNDPKTPFYTSARFLPP 388          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGL1_SOLTU (Glucose-1-phosphate adenylyltransferase large subunit 1 (Fragment) OS=Solanum tuberosum GN=AGPS1 PE=2 SV=1)

HSP 1 Score: 375.17 bits (962), Expect = 2.012e-103
Identity = 178/238 (74.79%), Postives = 208/238 (87.39%), Query Frame = 2
Query:    2 ARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYTSARFCHP 715
            AR+Y  GNGV+FGDGFVEVLAATQTPGEAGKKWFQGTADAVR+FIWVFEDAKNKN+EN+++LSGDHLYRMDY E +Q HID  ADIT+SC P +D RASD+GL+KID  G+++QFAEKPKG DLK MQ DTTL+GLS  DA K PYIASMGVY+F+TDVLL LL+ SYP SNDFGSEIIPA++ D+NVQA++F DYWEDIGTIKSF+ A+LALT++  +F+FYDPKTPFYTS RF  P
Sbjct:  103 ARTY-FGNGVSFGDGFVEVLAATQTPGEAGKKWFQGTADAVRKFIWVFEDAKNKNIENIVVLSGDHLYRMDYMELVQNHIDRNADITLSCAPAEDSRASDFGLVKIDSRGRVVQFAEKPKGFDLKAMQVDTTLVGLSPQDAKKSPYIASMGVYVFKTDVLLKLLKWSYPTSNDFGSEIIPAAIDDYNVQAYIFKDYWEDIGTIKSFYNASLALTQEFPEFQFYDPKTPFYTSPRFLPP 339          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGL3_ARATH (Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic OS=Arabidopsis thaliana GN=APL3 PE=2 SV=2)

HSP 1 Score: 365.155 bits (936), Expect = 2.082e-100
Identity = 169/238 (71.01%), Postives = 203/238 (85.29%), Query Frame = 2
Query:    2 ARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYTSARFCHP 715
            AR+Y  GNG+NFGDGFVEVLAATQTPGEAGKKWFQGTADAVR+F+WVFEDAKN+N+EN++ILSGDHLYRM+Y +F+Q H+D+KADIT+SC P+D+ RAS+YGL+ IDRSG+++ F+EKP G DLK MQ DTT+ GLS  +A K PYIASMGVY F+T+ LL LL   YP SNDFGSEIIPA++KDHNVQ +++ DYWEDIGTIKSF+ AN+AL E+  KFEFYD  TPFYTS RF  P
Sbjct:  154 ARTY-FGNGINFGDGFVEVLAATQTPGEAGKKWFQGTADAVRKFLWVFEDAKNRNIENIIILSGDHLYRMNYMDFVQHHVDSKADITLSCAPVDESRASEYGLVNIDRSGRVVHFSEKPTGIDLKSMQTDTTMHGLSHQEAAKSPYIASMGVYCFKTEALLKLLTWRYPSSNDFGSEIIPAAIKDHNVQGYIYRDYWEDIGTIKSFYEANIALVEEHPKFEFYDQNTPFYTSPRFLPP 390          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGL4_ARATH (Probable glucose-1-phosphate adenylyltransferase large subunit, chloroplastic OS=Arabidopsis thaliana GN=At2g21590 PE=2 SV=1)

HSP 1 Score: 363.229 bits (931), Expect = 7.910e-100
Identity = 167/238 (70.17%), Postives = 203/238 (85.29%), Query Frame = 2
Query:    2 ARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYTSARFCHP 715
            AR+Y  GNG+NFG GFVEVLAATQTPGEAGKKWFQGTADAVR+F+WVFEDAKN+N+EN+LILSGDHLYRM+Y +F+Q H+D+ ADIT+SC P+ + RAS++GL+KIDR G++I F+EKP G DLK MQ DTT+LGLS  +A   PYIASMGVY F+T+ LLNLL   YP SNDFGSE+IPA+++DH+VQ ++F DYWEDIGTIK+F+ ANLAL E+  KFEFYDP+TPFYTS RF  P
Sbjct:  156 ARTY-FGNGINFGGGFVEVLAATQTPGEAGKKWFQGTADAVRKFLWVFEDAKNRNIENILILSGDHLYRMNYMDFVQSHVDSNADITLSCAPVSESRASNFGLVKIDRGGRVIHFSEKPTGVDLKSMQTDTTMLGLSHQEATDSPYIASMGVYCFKTEALLNLLTRQYPSSNDFGSEVIPAAIRDHDVQGYIFRDYWEDIGTIKTFYEANLALVEERPKFEFYDPETPFYTSPRFLPP 392          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGL1_ARATH (Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic OS=Arabidopsis thaliana GN=ADG2 PE=1 SV=3)

HSP 1 Score: 339.347 bits (869), Expect = 1.223e-92
Identity = 162/238 (68.07%), Postives = 195/238 (81.93%), Query Frame = 2
Query:    2 ARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYTSARFCHP 715
            AR+YN  NG+ FGDG+VEVLAATQTPGE+GK+WFQGTADAVRQF W+FEDA++K++E+VLILSGDHLYRMDY +F+Q H  + ADI++SC+P+DD RASD+GLMKID  G++I F+EKPKG DLK M  DTT+LGLS  +A K PYIASMGVY+F+ ++LLNLLR  +P +NDFGSEIIP S K+  V A+LFNDYWEDIGTI+SFF ANLALTE P  F FYD   P YTS R   P
Sbjct:  155 ARAYN-SNGLGFGDGYVEVLAATQTPGESGKRWFQGTADAVRQFHWLFEDARSKDIEDVLILSGDHLYRMDYMDFIQDHRQSGADISISCIPIDDRRASDFGLMKIDDKGRVISFSEKPKGDDLKAMAVDTTILGLSKEEAEKKPYIASMGVYVFKKEILLNLLRWRFPTANDFGSEIIPFSAKEFYVNAYLFNDYWEDIGTIRSFFEANLALTEHPGAFSFYDAAKPIYTSRRNLPP 391          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGL3_SOLTU (Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS3 PE=2 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 4.351e-90
Identity = 160/239 (66.95%), Postives = 194/239 (81.17%), Query Frame = 2
Query:    2 ARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMG-VYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYTSARFCHP 715
            AR+YN GNGV F  G+VEVLAATQTPGE GK+WFQGTA AVRQF W+FEDA++K++E+VLILSGDHLYRMDY  F+Q H  + ADIT+S +P+DD RASD+GLMKID +G+++ F+EKPKG DLK M  DTT+LGLS  +A + PYIAS+G VY+F+ D+LLNLLR  +P +NDFGSEIIPAS K+  V+A+LFNDYWEDIGTI+SFF ANLALTE P +F FYD   P YTS R   P
Sbjct:  114 ARAYNFGNGVTFESGYVEVLAATQTPGELGKRWFQGTAHAVRQFHWLFEDARSKDIEDVLILSGDHLYRMDYLHFVQSHRQSGADITISSLPIDDSRASDFGLMKIDDTGRVMSFSEKPKGDDLKAMAVDTTVLGLSPEEAKEKPYIASIGKVYVFKKDILLNLLRWRFPTANDFGSEIIPASTKEFCVKAYLFNDYWEDIGTIRSFFRANLALTEHPPRFSFYDATKPIYTSRRNLPP 352          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGL2_WHEAT (Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-L PE=2 SV=2)

HSP 1 Score: 326.25 bits (835), Expect = 1.072e-88
Identity = 156/238 (65.55%), Postives = 194/238 (81.51%), Query Frame = 2
Query:    5 RSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDA-KNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYTSARFCHP 715
            R+Y LG G+NF DG VEVLAATQ PGEA   WF+GTADAVR+FIWV ED  KNK++E++LILSGD LYRMDY E +QKH+D  ADIT+SC P+ + RAS+YGL+K D SG+++QF+EKPKG DL+ M+ DT+ L  ++ D  K+PYIASMGVY+F+ DVLLNLL+S Y   +DFGSEI+P ++ DHNVQA++F DYWEDIGTI+SFF AN+AL EQP KFEFYDPKTPF+TS R+  P
Sbjct:  156 RTY-LGGGINFTDGSVEVLAATQMPGEAAG-WFRGTADAVRKFIWVLEDYYKNKSIEHILILSGDQLYRMDYMELVQKHVDDNADITLSCAPVGESRASEYGLVKFDSSGRVVQFSEKPKGDDLEAMKVDTSFLNFAIDDPAKYPYIASMGVYVFKRDVLLNLLKSRYAELHDFGSEILPRALHDHNVQAYVFTDYWEDIGTIRSFFDANMALCEQPPKFEFYDPKTPFFTSPRYLPP 391          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGL1_HORVU (Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 324.709 bits (831), Expect = 3.118e-88
Identity = 156/238 (65.55%), Postives = 194/238 (81.51%), Query Frame = 2
Query:    5 RSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDA-KNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYTSARFCHP 715
            R+Y LG G+NF DG VEVLAATQ PGEA   WF+GTADAVR+FIWV ED  K+K++E++LILSGD LYRMDY E +QKH+D  ADIT+SC P+ + RAS+YGL+K D SG++IQF+EKPKG DL+ M+ DT+ L  ++ D  K+PYIASMGVY+F+ DVLLNLL+S Y   +DFGSEI+P ++ DHNVQA++F DYWEDIGTI+SFF AN+AL EQP KFEFYDPKTPF+TS R+  P
Sbjct:  157 RTY-LGGGINFTDGSVEVLAATQMPGEAAG-WFRGTADAVRKFIWVLEDYYKHKSIEHILILSGDQLYRMDYMELVQKHVDDNADITLSCAPVGESRASEYGLVKFDSSGRVIQFSEKPKGDDLEAMKVDTSFLNFAIDDPAKYPYIASMGVYVFKRDVLLNLLKSRYAELHDFGSEILPRALHDHNVQAYVFTDYWEDIGTIRSFFDANMALCEQPPKFEFYDPKTPFFTSPRYLPP 392          
The following BLAST results are available for this feature:
BLAST of FC931623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
GLGL2_ARATH7.892e-10878.57Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_BETVU2.296e-10777.31Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL2_SOLTU9.647e-10677.54Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_SOLTU2.012e-10374.79Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL3_ARATH2.082e-10071.01Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL4_ARATH7.910e-10070.17Probable glucose-1-phosphate adenylyltransferase l... [more]
GLGL1_ARATH1.223e-9268.07Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL3_SOLTU4.351e-9066.95Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL2_WHEAT1.072e-8865.55Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_HORVU3.118e-8865.55Glucose-1-phosphate adenylyltransferase large subu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34107C01EF PostHarvP1 Citrus clementina cDNA clone C34107C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931623 ID=FC931623; Name=FC931623; organism=Citrus clementina; type=EST; length=729bp
GGCGCGGTCGTATAATCTTGGAAATGGTGTGAATTTTGGGGATGGGTTTG
TAGAGGTTCTGGCTGCTACTCAAACTCCTGGAGAAGCAGGAAAGAAGTGG
TTCCAAGGGACAGCAGATGCTGTGAGGCAATTTATATGGGTCTTTGAGGA
CGCCAAGAATAAGAATGTGGAGAATGTTTTGATCTTGTCTGGTGATCACC
TTTACCGGATGGACTATACAGAGTTTCTGCAGAAGCATATCGACACAAAA
GCTGATATTACAGTCTCATGTGTACCAATGGATGACTGCCGTGCATCAGA
TTATGGACTAATGAAGATTGACCGCTCAGGGCAAATCATCCAATTTGCTG
AGAAACCTAAGGGCCCTGATCTGAAAGGAATGCAATGTGATACTACTCTT
CTTGGTCTATCTATGCCAGATGCTGTCAAATTTCCTTACATTGCATCAAT
GGGTGTTTACTTGTTTAGAACTGATGTCCTACTAAATCTCTTGAGATCTA
GCTATCCCTTATCCAATGACTTTGGCTCTGAAATTATTCCAGCTTCTGTG
AAGGATCACAATGTCCAAGCCTTTTTATTCAATGACTACTGGGAGGACAT
TGGAACAATAAAGTCCTTTTTTTATGCCAATTTGGCCCTCACAGAACAGC
CTGCGAAGTTTGAATTTTATGATCCCAAGACACCTTTCTATACGTCTGCT
AGATTCTGCCACCCACTAAGTGATCGATG
back to top