FC931630

Overview
NameFC931630
Unique NameFC931630
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6607 contig Ccv1_Contig6607:800..1481. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_CAMAC (Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata GN=TSB PE=2 SV=1)

HSP 1 Score: 438.343 bits (1126), Expect = 1.730e-122
Identity = 211/227 (92.95%), Postives = 223/227 (98.24%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVATATVCARFGLQC++YMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVE+THYILGSVAGPHPYPMMVR+FHAVIGKETR+QALEKWGGKPDVL+ACVGGGSNAMGLFHEFV+DKDVR+IGVEAAGFGL SGKHAATL+KGEVGVLHGA+SYLLQD+DGQIIEPHSISAGLDYPGVGPEHSFLKD GRAEYY  TD+EALEA
Sbjct:  183 ETGAGQHGVATATVCARFGLQCVIYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVESTHYILGSVAGPHPYPMMVREFHAVIGKETRKQALEKWGGKPDVLVACVGGGSNAMGLFHEFVDDKDVRMIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFLKDIGRAEYYCCTDEEALEA 409          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB1_ARATH (Tryptophan synthase beta chain 1, chloroplastic OS=Arabidopsis thaliana GN=TSB1 PE=2 SV=1)

HSP 1 Score: 437.958 bits (1125), Expect = 2.260e-122
Identity = 209/227 (92.07%), Postives = 222/227 (97.80%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVATATVCARFGL+CI+YMGAQDMERQALNVFRMRLLGAEVR VHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETR+QALEKWGGKPDVL+ACVGGGSNAMGLFHEFVND +VR+IGVEAAGFGL SGKHAATL+KG+VGVLHGA+SYLLQD+DGQIIEPHSISAGLDYPGVGPEHSF KD GRAEYY++TD+EALEA
Sbjct:  187 ETGAGQHGVATATVCARFGLECIIYMGAQDMERQALNVFRMRLLGAEVRGVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRKQALEKWGGKPDVLVACVGGGSNAMGLFHEFVNDTEVRMIGVEAAGFGLDSGKHAATLTKGDVGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFFKDMGRAEYYSITDEEALEA 413          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRBP2_ARATH (Tryptophan synthase beta chain 2, chloroplastic OS=Arabidopsis thaliana GN=TSB2 PE=2 SV=2)

HSP 1 Score: 436.802 bits (1122), Expect = 5.035e-122
Identity = 209/227 (92.07%), Postives = 223/227 (98.24%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVATATVCARFGLQCI+YMGAQDMERQALNVFRMRLLGAEVR VHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETR+QA+EKWGGKPDVL+ACVGGGSNAMGLFHEFV+D +VR+IGVEAAGFGL SGKHAATL+KG+VGVLHGA+SYLLQD+DGQIIEPHSISAGLDYPGVGPEHSFLKD GRAEY++VTD+EALEA
Sbjct:  192 ETGAGQHGVATATVCARFGLQCIIYMGAQDMERQALNVFRMRLLGAEVRGVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRKQAMEKWGGKPDVLVACVGGGSNAMGLFHEFVDDTEVRMIGVEAAGFGLDSGKHAATLTKGDVGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFLKDVGRAEYFSVTDEEALEA 418          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB1_MAIZE (Tryptophan synthase beta chain 1 (Fragment) OS=Zea mays GN=TSB1 PE=2 SV=1)

HSP 1 Score: 421.779 bits (1083), Expect = 1.676e-117
Identity = 202/227 (88.99%), Postives = 218/227 (96.04%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVATATVCARFGLQCI+YMGAQDMERQALNVFRM+LLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVR+FH VIGKETRRQA+ KWGGKPDVL+ACVGGGSNAMGLFHEFV D+DVRLIGVEAAG G+ + KHAATL+KG+VGVLHG++SYLLQD+DGQ+IEPHSISAGLDYPGVGPEHSFLKD GRAEY +VTD EAL+A
Sbjct:  106 ETGAGQHGVATATVCARFGLQCIIYMGAQDMERQALNVFRMKLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFHKVIGKETRRQAMHKWGGKPDVLVACVGGGSNAMGLFHEFVEDQDVRLIGVEAAGHGVDTDKHAATLTKGQVGVLHGSMSYLLQDDDGQVIEPHSISAGLDYPGVGPEHSFLKDIGRAEYDSVTDQEALDA 332          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB2_MAIZE (Tryptophan synthase beta chain 2, chloroplastic (Fragment) OS=Zea mays GN=TSB2 PE=2 SV=1)

HSP 1 Score: 420.239 bits (1079), Expect = 4.877e-117
Identity = 200/227 (88.11%), Postives = 218/227 (96.04%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVATATVC RFGLQCI+YMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVR+FH VIGKETRRQA++KWGGKPDVL+ACVGGGSNAMGLFHEFV D+DVRL+G+EAAG G+ + KHAATL+KG+VGVLHG++SYLLQD+DGQ+IEPHSISAGLDYPGVGPEHSFLKD GRAEY +VTD EAL+A
Sbjct:  160 ETGAGQHGVATATVCRRFGLQCIIYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFHKVIGKETRRQAMDKWGGKPDVLVACVGGGSNAMGLFHEFVEDQDVRLVGLEAAGHGVDTDKHAATLTKGQVGVLHGSMSYLLQDDDGQVIEPHSISAGLDYPGVGPEHSFLKDIGRAEYDSVTDQEALDA 386          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_ANAVT (Tryptophan synthase beta chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trpB PE=3 SV=1)

HSP 1 Score: 402.905 bits (1034), Expect = 8.057e-112
Identity = 191/227 (84.14%), Postives = 211/227 (92.95%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVATATVCARFGL+C++YMG  DMERQALNVFRMRL+GAEVR V +GT TLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIG+ETR QALEKWGG PD+L+ACVGGGSNAMGLF+EFVN+  +RLIGVEAAG G+ + KHAATL+KG VGVLHGA+SYLLQDEDGQ+IE HSISAGLDYPGVGPEHS+LKD GRAEYY+VTD++AL A
Sbjct:  129 ETGAGQHGVATATVCARFGLECVIYMGVHDMERQALNVFRMRLMGAEVRPVEAGTGTLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGQETRAQALEKWGGLPDILLACVGGGSNAMGLFYEFVNESSIRLIGVEAAGEGVNTEKHAATLTKGRVGVLHGAMSYLLQDEDGQVIEAHSISAGLDYPGVGPEHSYLKDVGRAEYYSVTDEQALAA 355          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB2_ANASP (Tryptophan synthase beta chain 2 OS=Anabaena sp. (strain PCC 7120) GN=trpB2 PE=3 SV=1)

HSP 1 Score: 402.134 bits (1032), Expect = 1.374e-111
Identity = 191/227 (84.14%), Postives = 211/227 (92.95%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVATATVCARFGL+C++YMG  DMERQALNVFRMRL+GAEVR V +GT TLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIG+ETR QALEKWGG PD+L+ACVGGGSNAMGLF+EFVN+  ++LIGVEAAG G+ + KHAATL+KG VGVLHGA+SYLLQDEDGQ+IE HSISAGLDYPGVGPEHS+LKD GRAEYY+VTD+EAL A
Sbjct:  129 ETGAGQHGVATATVCARFGLECVIYMGVHDMERQALNVFRMRLMGAEVRPVAAGTGTLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGQETRAQALEKWGGLPDILLACVGGGSNAMGLFYEFVNESSIKLIGVEAAGEGVNTEKHAATLTKGRVGVLHGAMSYLLQDEDGQVIEAHSISAGLDYPGVGPEHSYLKDVGRAEYYSVTDEEALAA 355          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_TRIEI (Tryptophan synthase beta chain OS=Trichodesmium erythraeum (strain IMS101) GN=trpB PE=3 SV=1)

HSP 1 Score: 399.053 bits (1024), Expect = 1.163e-110
Identity = 190/227 (83.70%), Postives = 207/227 (91.19%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVATATVCARFGL+C++YMG  DMERQALNVFRMRL+GAEVR V +GT TLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIG ETR Q LEKW G PD+L+ACVGGGSNAMGLFHEF+ND  VR+IGVEAAG G+ + KHAATL+ G VGVLHGA+SYLLQDE+GQIIEPHSISAGLDYPGVGPEHSFLKD GR EYY+VTD+EA+ A
Sbjct:  126 ETGAGQHGVATATVCARFGLKCVIYMGIHDMERQALNVFRMRLMGAEVRPVEAGTGTLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGVETRAQCLEKWNGLPDILMACVGGGSNAMGLFHEFINDPSVRMIGVEAAGKGVDTNKHAATLTLGRVGVLHGAMSYLLQDEEGQIIEPHSISAGLDYPGVGPEHSFLKDSGRVEYYSVTDNEAVAA 352          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_THEEB (Tryptophan synthase beta chain OS=Thermosynechococcus elongatus (strain BP-1) GN=trpB PE=3 SV=1)

HSP 1 Score: 394.815 bits (1013), Expect = 2.194e-109
Identity = 189/227 (83.26%), Postives = 206/227 (90.75%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVATATVCARFGLQC++YMG QDMERQ LNV RMRLLGAEV  V +GT TLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPM+VR+FHAVIG ETR+Q LEKWGG PD+L+ACVGGGSNAMGLFHEFV +  VRLIGVEAAG GL +G HAATL+KGEVGVLHGA+SYLLQD DGQ++E HSISAGLDYPGVGPEHS+LKD GRAEYY+VTD EA+ A
Sbjct:  126 ETGAGQHGVATATVCARFGLQCVIYMGVQDMERQRLNVLRMRLLGAEVAPVSAGTGTLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVREFHAVIGAETRQQCLEKWGGLPDILLACVGGGSNAMGLFHEFVEEPQVRLIGVEAAGQGLDTGHHAATLTKGEVGVLHGAMSYLLQDADGQVVEAHSISAGLDYPGVGPEHSYLKDIGRAEYYSVTDTEAVAA 352          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB1_ANASP (Tryptophan synthase beta chain 1 OS=Anabaena sp. (strain PCC 7120) GN=trpB1 PE=3 SV=1)

HSP 1 Score: 385.956 bits (990), Expect = 1.019e-106
Identity = 182/226 (80.53%), Postives = 205/226 (90.71%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALE 678
            ETGAGQHGVATATVCARFGL C++YMG  DMERQALNVFRM+L+GAEVR V +GT TLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPM+VRDFHA+IGKETR Q  EKWGG PD+L+ACVGGGSNA+GLFHEF+++  +RLIGVEAAG G+ + KHAATL+ G VGVLHGA+SYLLQDEDGQ+IE HSISAGLDYPGVGPEHS+LKD  RAEYY+VTD +AL+
Sbjct:  126 ETGAGQHGVATATVCARFGLDCVIYMGIHDMERQALNVFRMKLMGAEVRPVEAGTGTLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMIVRDFHAIIGKETRVQCQEKWGGLPDILLACVGGGSNAIGLFHEFIDEPSIRLIGVEAAGEGVDTDKHAATLTLGRVGVLHGAMSYLLQDEDGQVIEAHSISAGLDYPGVGPEHSYLKDIRRAEYYSVTDKQALD 351          
The following BLAST results are available for this feature:
BLAST of FC931630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 447
Match NameE-valueIdentityDescription
TRPB_CAMAC1.730e-12292.95Tryptophan synthase beta chain 2, chloroplastic OS... [more]
TRPB1_ARATH2.260e-12292.07Tryptophan synthase beta chain 1, chloroplastic OS... [more]
TRBP2_ARATH5.035e-12292.07Tryptophan synthase beta chain 2, chloroplastic OS... [more]
TRPB1_MAIZE1.676e-11788.99Tryptophan synthase beta chain 1 (Fragment) OS=Zea... [more]
TRPB2_MAIZE4.877e-11788.11Tryptophan synthase beta chain 2, chloroplastic (F... [more]
TRPB_ANAVT8.057e-11284.14Tryptophan synthase beta chain OS=Anabaena variabi... [more]
TRPB2_ANASP1.374e-11184.14Tryptophan synthase beta chain 2 OS=Anabaena sp. (... [more]
TRPB_TRIEI1.163e-11083.70Tryptophan synthase beta chain OS=Trichodesmium er... [more]
TRPB_THEEB2.194e-10983.26Tryptophan synthase beta chain OS=Thermosynechococ... [more]
TRPB1_ANASP1.019e-10680.53Tryptophan synthase beta chain 1 OS=Anabaena sp. (... [more]

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Properties
Property NameValue
Genbank descriptionC34107C08EF PostHarvP1 Citrus clementina cDNA clone C34107C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931630 ID=FC931630; Name=FC931630; organism=Citrus clementina; type=EST; length=682bp
GAGACAGGCGCCGGTCAGCACGGAGTTGCGACGGCTACTGTCTGCGCGCG
GTTCGGTTTGCAGTGTATCGTCTACATGGGTGCCCAGGACATGGAAAGGC
AGGCACTTAATGTGTTCAGAATGCGGCTTCTTGGTGCCGAGGTTAGAGCG
GTCCATTCTGGGACAGCCACGCTGAAGGATGCTACATCAGAAGCTATACG
GGACTGGGTGACTAATGTGGAAACTACCCATTACATTCTGGGATCTGTTG
CCGGGCCTCATCCGTACCCCATGATGGTCAGAGATTTCCATGCTGTGATT
GGAAAAGAAACAAGAAGACAAGCATTGGAGAAATGGGGTGGGAAACCAGA
TGTGCTGATTGCATGCGTTGGTGGTGGTTCAAATGCCATGGGTCTCTTCC
ACGAATTTGTTAATGACAAGGATGTTAGGTTGATTGGTGTGGAGGCAGCA
GGTTTTGGTCTAGGCAGTGGCAAACACGCTGCTACCTTGTCCAAAGGAGA
AGTTGGGGTGTTGCATGGTGCTTTGAGCTATTTGCTGCAGGATGAAGATG
GGCAAATAATTGAGCCACACTCCATTAGTGCAGGCTTAGATTACCCTGGA
GTTGGACCTGAGCATAGTTTTCTGAAAGATGAAGGGCGTGCTGAGTACTA
TAATGTCACAGATGATGAAGCATTGGAAGCTT
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