FC931636

Overview
NameFC931636
Unique NameFC931636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10278 contig Ccv1_Contig10278:191..927. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931636 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 6.928e-35
Identity = 95/227 (41.85%), Postives = 120/227 (52.86%), Query Frame = 1
Query:   22 LKPKKLELKRSSNKKYSKPIVDDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPSTFSAGRK----------------SHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDE---TPAAAPKSSVKANS-QKSV--PKACLSPVQPSLNQNFNYLNNSDQDYYNNVSILEEKPQ 636
            LK K    K+ SNK+     +DDDFEADFQGFK                       KP  F+A  K                ++    V+  EQA+KS++RKRKNQYRGIRQRPWGKWAAEIRDP KG R WLGTF+T              IRG KAKVNFP+E   +  +  + S K N+ QKSV  P   ++ VQ   + +  Y NNS  + + ++S +EEKPQ
Sbjct:   28 LKNKVKASKKRSNKRSDFFDLDDDFEADFQGFKDDSAFDCEDDDDVFVNV------KPFVFTATTKPVASAFVSTGIYLVGSAYAKKTVESAEQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPEEKNPSVVSQKRPSAKTNNLQKSVAKPNKSVTLVQQPTHLSQQYCNNSFDNSFGDMSFMEEKPQ 248          
BLAST of FC931636 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.012e-30
Identity = 90/208 (43.27%), Postives = 107/208 (51.44%), Query Frame = 1
Query:   46 KRSSNKKYSKPIVDDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPSTFSAGRK------SHGSTAVKHVE----QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDET-PAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFNYLNNSDQDYYNNVSILEEKPQ 636
            K+SS  + +    D +FEADFQGFK                       KP  F++  K      + GS   K V      A+KS  RKRKNQYRGIRQRPWGKWAAEIRDP +G R+WLGTF T              IRG KAKVNFP+E   A + K SVKAN QK V K   +P  P+L QN N         + N+  +EEK Q
Sbjct:   36 KKSSKNRSNFFDFDAEFEADFQGFKDDSSIDCDDDFDVGDVFADV---KPFVFTSTPKPAVSAAAEGSVFGKKVTGLDGDAEKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPEENMKANSQKRSVKANLQKPVAKPNPNP-SPALVQNSNI-------SFENMCFMEEKHQ 232          
BLAST of FC931636 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.387e-27
Identity = 75/186 (40.32%), Postives = 96/186 (51.61%), Query Frame = 1
Query:   85 DDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPSTFSAGRKSHGSTAVKHVE---QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFNYLNNSDQDYYNNVSILEEKP 633
            D+DFEADF+ F+                       KP+ F         + +        A KS +RKRKNQ+RGIRQRPWGKWAAEIRDP KGVRVWLGTFN+              IRGKKAKVNFP E P  A K    + + K+ PK+ +   +P++   FN L N++   Y + +    KP
Sbjct:   50 DEDFEADFEEFEVDSGDSDLELGEEDDDDVVEI--KPAAFKRALSRDNLSTITTAGFDGPAAKSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFP-EAPTTAQKRRAGSTTAKA-PKSSVEQ-KPTVKPAFNNLANANAFVYPSANFTSNKP 230          
BLAST of FC931636 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.770e-22
Identity = 65/153 (42.48%), Postives = 75/153 (49.02%), Query Frame = 1
Query:  235 AVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD---------ETPAAAPKS--------------SVKANSQKSVPKACLSPVQPSLNQNFNYLNNSDQDYYNNVSILE 624
            AVK  +  +    RKRKN YRGIR+RPWGKWAAEIRDP KGVRVWLGTFNT              IRG KAK+NFPD           P ++P+S              S    SQ S P  C+        QN +Y    D D    +S LE
Sbjct:   60 AVKKEQATEPGKRRKRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPDLHHPPPPNYTPPPSSPRSTDQPPAKKVCVVSQSESELSQPSFPVECIGFGNGDEFQNLSYGFEPDYDLKQQISSLE 212          
BLAST of FC931636 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.330e-19
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 1
Query:  259 KKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD 465
            ++  +R+RKN YRGIRQRPWGKWAAEIRDP+KGVRVWLGTF T              IRG+KAK+NFP+
Sbjct:   39 ERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFPN 107          
BLAST of FC931636 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.893e-18
Identity = 49/124 (39.52%), Postives = 69/124 (55.65%), Query Frame = 1
Query:  271 ERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPA-----AAPKSSVKANSQKSVPKACLSPVQPSLNQNFNYLNNSDQDYYNNVSILEE 627
            ++K+ ++Y+GIR+RPWG+WAAEIRDP KGVRVWLGTFNT              IRG KAK+NFP+E+       A     V+ N +  +  A +S    S   +F +  N+      +   LE+
Sbjct:   18 KKKQSSRYKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNESSGKRKAKAKTVQQVEENHEADLDVAVVSSAPSSSCLDFLWEENNPDTLLIDTQWLED 141          
BLAST of FC931636 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.924e-17
Identity = 43/98 (43.88%), Postives = 57/98 (58.16%), Query Frame = 1
Query:  193 PSTFSAGRKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAP 486
            PS+F+    SH     + + +A     R++K +YRG+RQRPWGKWAAEIRDP +  RVWLGTF+T               RG KAK+NFP++     P
Sbjct:   45 PSSFARVDSSHNPIE-ESMSKAFPEEAREKKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPEDVRILPP 141          
BLAST of FC931636 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.819e-17
Identity = 50/116 (43.10%), Postives = 62/116 (53.45%), Query Frame = 1
Query:  199 TFSAGRKSHGSTAVKHVEQAKKSTERK-RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP-------DETPAAAPKSSVKANSQKSV 522
            T S+ R+   S   K  E   K  +RK +KN YRG+RQRPWGK+AAEIRDP +  RVWLGTF T               RG +AK+NFP         +P AA     KA++  SV
Sbjct:  104 TSSSNRRRESSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFPFVDYTSSVSSPVAADDIGAKASASASV 219          
BLAST of FC931636 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.111e-16
Identity = 48/124 (38.71%), Postives = 64/124 (51.61%), Query Frame = 1
Query:  229 STAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSV-----------KANSQKSVPKACLSPVQPSLNQN 567
            +TA    E +  S ++ R+ +YRG+RQRPWGKWAAEIRDP K  RVWLGTF+                RG KAK+NFP+      P S+               S+ S     L P++P+ NQ+
Sbjct:  165 TTATASSETSSFSGDQPRR-RYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFPENVKLVRPASTEAQPVHQTAAQRPTQSRNSGSTTTLLPIRPASNQS 287          
BLAST of FC931636 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.233e-16
Identity = 44/110 (40.00%), Postives = 55/110 (50.00%), Query Frame = 1
Query:  280 RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFNYLNNSDQDYYNN 609
            RK  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T               +G KAK+NFP+    A+  S+                         NY ++++Q YY+N
Sbjct:   88 RKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFPERAQLASNTSTTTGPP--------------------NYYSSNNQIYYSN 177          
The following BLAST results are available for this feature:
BLAST of FC931636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
RAP22_ARATH6.928e-3541.85Ethylene-responsive transcription factor RAP2-2 OS... [more]
RA212_ARATH3.012e-3043.27Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF1_ORYSJ2.387e-2740.32Ethylene-responsive transcription factor 1 OS=Oryz... [more]
RAP23_ARATH1.770e-2242.48Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF71_ARATH5.330e-1962.32Ethylene-responsive transcription factor ERF071 OS... [more]
ERF73_ARATH5.893e-1839.52Ethylene-responsive transcription factor ERF073 OS... [more]
EF110_ARATH2.924e-1743.88Ethylene-responsive transcription factor ERF110 OS... [more]
EF109_ARATH3.819e-1743.10Ethylene-responsive transcription factor ERF109 OS... [more]
ABR1_ARATH1.111e-1638.71Ethylene-responsive transcription factor ABR1 OS=A... [more]
EF115_ARATH3.233e-1640.00Ethylene-responsive transcription factor ERF115 OS... [more]

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Properties
Property NameValue
Genbank descriptionC34107D03EF PostHarvP1 Citrus clementina cDNA clone C34107D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931636 ID=FC931636; Name=FC931636; organism=Citrus clementina; type=EST; length=734bp
GACTGAAGAATCCAAAACTCTCTCAAGCCAAAGAAGCTGGAGCTGAAGAG
GTCATCCAACAAGAAGTACTCAAAGCCGATCGTCGACGATGACTTCGAGG
CTGATTTCCAAGGATTCAAGGACGATGAAGAAGAGTCTGACATTGATGGT
GACGTGGACGTTGATGCCGACTTGATGATGGCTGATATTAAGCCTTCCAC
TTTCTCAGCTGGTCGCAAGTCTCATGGATCTACAGCCGTGAAGCACGTTG
AACAAGCTAAAAAATCCACAGAAAGAAAGAGGAAGAATCAATATAGGGGA
ATTAGGCAGCGTCCATGGGGAAAATGGGCTGCTGAGATCCGTGACCCCAC
AAAAGGGGTTCGTGTCTGGCTAGGAACTTTCAATACCGCTGAAGAAGCCG
CTAGGGCTTATGATGCCGAGGCACGGAGGATCCGTGGGAAGAAAGCTAAG
GTTAACTTTCCAGATGAAACTCCTGCTGCTGCTCCAAAGAGCTCAGTGAA
GGCAAACTCTCAGAAATCCGTTCCCAAAGCTTGCCTAAGCCCCGTGCAGC
CAAGTTTGAACCAAAACTTCAATTACTTGAACAACTCCGATCAGGATTAC
TACAACAATGTGAGTATTCTGGAGGAGAAACCACAGTGAATCAGTATGGA
TATATGGGCTCCTTCCCTGATGATGGAGAACTAGGATTCAACCCTTTGTG
CCACAGCTGATGATACTCCTGTGTACTTCACTCT
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